3ACOA

Crystal structure of the efc/f-bar domain of human pacsin2/syndapin ii (2.7 a)
Total Genus 101
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
101
sequence length
284
structure length
284
Chain Sequence
DSFWEVGNYKRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDLSNVAGYKAIYHDLEQSIRAADAVEDLRWFRANHGPGMAMNWP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Endocytosis
molecule keywords Protein kinase C and casein kinase substrate in neurons prot
publication title Mapping of the basic amino-acid residues responsible for tubulation and cellular protrusion by the EFC/F-BAR domain of pacsin2/Syndapin II
pubmed doi rcsb
source organism Homo sapiens
total genus 101
structure length 284
sequence length 284
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00611 FCH Fes/CIP4, and EFC/F-BAR homology domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 3acoA01
3SOGA 3M3WA 4NSWA 2C08A 2RAJA 5C5BA 2EFKA 2Z0VA 2Q12A 3CAZA 3QWEA 1I4LA 2V0OA 3HAIA 3QNIA 4DCNC 3SYVA 2X3XA 3QE6A 4AKVA 3DYTA 1X03A 3Q84A 4H8SA 4ATMA 2ELBA 1I4DA 2D4CA 3ABHA 3Q0KA 2YKTA 3LLLA 4FZSA 2Z0OA 2Z0NA 2Q13A 3ACOA 3PLTA 2D1LA 2EFLA 1ZWWA 2X3VA 4WPEA 2RAKA 5C5BB 1I49A 4I1QA 2RAIA 3HAHA 2X3WA 1Y2OA 1X04A 4WPCA 4DYLA 1URUA 3G9GA 3HAJA 3I2WA 1I4TA 1WDZA 4AVMA 3OK8A 2FICA 4BNEA 4NQIA
chains in the Genus database with same CATH superfamily
2Z0VA 1QX1A 3D2EA 4EZNA 2YI9A 1E9VA 2GF4A 2EX3B 4PO2A 4R5JA 2MI7A 4R5GA 3BVVA 3EJSA 3BLBA 3DPPA 1DKXA 5KBPA 4JLCA 3M3WA 4IM0A 3RV1A 4AZCA 4EZUA 3CKDA 1MJGA 2YKTA 2Z8YA 3B52X 3DPOA 3EJQA 1X04A 3DX4A 1GNTA 3VEAA 2QKWA 4EZOA 2Q12A 4EZTA 4D8JA 1X03A 4ATMA 3T49A 3ACOA 2F7RA 4FM3A 1I49A 3DX3A 1TQWA 4BNEA 2OZNB 5C5BA 4UDYX 3QWEA 1TQSA 2V0OA 3T47A 4IM2A 5TKYA 4HR1A 2ELBA 3D4ZA 2Q13A 3PLTA 3BUQA 1ZWWA 1OAOA 3VKHA 3OK8A 2ND1A 3OHXM 2QFFA 4NSWA 2JNKA 2YIBA 3LLLA 3BVUA 1SUFA 3VEBA 2RAKA 3HAHA 4E81A 1W9MA 4UDXX 1LQ7A 4EZVA 2EFKA 3DPQA 1DKZA 3HAIA 3QNIA 1R5EA 4H8SA 2YL6A 2LXYA 2QXLA 2YI8A 4JL9A 3B51X 3I39X 3UITA 2RAIA 2EWFA 1QWUA 3HAJA 4AZ6A 4JNFA 3KDRA 3DX1A 2OBMA 3D4YA 2OO2A 3LVTA 3I01A 4FZOA 1UPXA 4EZPA 2NCZA 4JWIA 1SU8A 1JQKA 3RPMA 1R33A 4WPEA 4AZ5A 4EZRA 1HWWA 4F00A 5FIGA 3ZEDA 3DX2A 1U00A 3O3OB 2JNSA 2RAJA 3ER9B 2YL9A 2X3XA 4KIKB 2RT6A 4JWCA 2D4CA 2F7OA 3KAVA 3CVRA 3EJPA 4I1QA 4EZQA 4H6HA 2F1BA 1HTYA 3I2WA 1I4TA 1O7DC 4AVMA 3ER8C 3DX0A 4IW0A 4IM3A 4AZBA 4EZWA 2KHOA 2N3KA 3ABHA 3Q0KA 2X3VA 3F7WA 1YWMA 2X3WA 4EZYA 1TQVA 1TQTA 3DDGA 1OA1A 1E1DA 3OWGA 2YL8A 3D51A 3CZSA 2LM0A 2GAFD 3EJUA 1I4LA 2OW7A 4AZGA 4AKVA 3LMFA 2GA9D 3ERCC 1HXKA 3BVTA 1O7DB 4IWQA 3CV5A 1Y2OA 4JWDA 3CZNA 4NPHA 4H6IA 1TQUA 4DCNC 1PS3A 2OW6A 3QE6A 2YLLA 4E3CA 1ZYLA 1I4DA 1GN9A 2Z0OA 3B53X 1R34A 3C7NA 3EJRA 4KIKA 4R5LA 2YLAA 4EZSA 4R5IA 4IWPA 3QA8A 4NQIA 3T46A 2F7PA 4EZZA 3QNJA 4AZ7A 1E2UA 1SU6A 4M0MA 3DDFA 3EJTA 5E84A 2F18A 2FICA 2C08A 3FD9A 4B9QA 3SYVA 1DKYA 2WYIA 2WINM 3O3MB 4JNEA 3BUIA 4JWEA 1SU7A 4IWOA 2YIAA 4WPCA 3I04A 3T4AG 4AZHA 4EZXA 2F7QA 2O0I1 3RV0A 2YL5A 2ZXQA 4HYBA 2WYHA 2ND0A 1OA0A 1GNLA 3BUBA 3D52A 4HY9A 4R5KA 2PY6A 3BUDA 4AZCB 3L3PA 4FZPA 3L3OM 1URUA 3D2FA 3G9GA 3GI7A 1WDZA 3O3NB 3CAZA 1QWNA 3BUPA 2YIVX 3BVWA 3DYTA 3Q84A 2F1AA 5FLEX 4F01A 2EFLA 2PMRA 2ALWA 2FYVA 2X5CA 4DYLA 2OBLA 4JN4A 3SOGA 3A98A 4AZIA 3T48A 4G6QA 4FZSA 2Z0NA 2D1LA 5C5BB 3KAWA 3BVXA 3D50A 4HR1B
chains in the Genus database with same CATH topology
3SOGA 3M3WA 4NSWA 2C08A 2RAJA 5C5BA 2EFKA 2Z0VA 2Q12A 3CAZA 3QWEA 1I4LA 2V0OA 3HAIA 3QNIA 4DCNC 3SYVA 2X3XA 3QE6A 4AKVA 3DYTA 1X03A 3Q84A 4H8SA 4ATMA 2ELBA 1I4DA 2D4CA 3ABHA 3Q0KA 2YKTA 3LLLA 4FZSA 2Z0OA 2Z0NA 2Q13A 3ACOA 3PLTA 2D1LA 2EFLA 1ZWWA 2X3VA 4WPEA 2RAKA 5C5BB 1I49A 4I1QA 2RAIA 3HAHA 2X3WA 1Y2OA 1X04A 4WPCA 4DYLA 1URUA 3G9GA 3HAJA 3I2WA 1I4TA 1WDZA 4AVMA 3OK8A 2FICA 4BNEA 4NQIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SOG A;  3M3W A;  4NSW A;  2C08 A;  2RAJ A;  5C5B A;  2EFK A;  2Z0V A;  2Q12 A;  3CAZ A;  3QWE A;  1I4L A;  2V0O A;  3HAI A;  3QNI A;  4DCN C;  3SYV A;  2X3X A;  3QE6 A;  4AKV A;  3DYT A;  1X03 A;  3Q84 A;  4H8S A;  4ATM A;  2ELB A;  1I4D A;  2D4C A;  3ABH A;  3Q0K A;  2YKT A;  3LLL A;  4FZS A;  2Z0O A;  2Z0N A;  2Q13 A;  3ACO A;  3PLT A;  2D1L A;  2EFL A;  1ZWW A;  2X3V A;  4WPE A;  2RAK A;  5C5B B;  1I49 A;  4I1Q A;  2RAI A;  3HAH A;  2X3W A;  1Y2O A;  1X04 A;  4WPC A;  4DYL A;  1URU A;  3G9G A;  3HAJ A;  3I2W A;  1I4T A;  1WDZ A;  4AVM A;  3OK8 A;  2FIC A;  4BNE A;  4NQI A; 
#chains in the Genus database with same CATH topology
 2Z0V A;  1QX1 A;  3D2E A;  4EZN A;  2YI9 A;  1E9V A;  2GF4 A;  2EX3 B;  4PO2 A;  4R5J A;  2MI7 A;  4R5G A;  3BVV A;  3EJS A;  3BLB A;  3DPP A;  1DKX A;  5KBP A;  4JLC A;  3M3W A;  4IM0 A;  3RV1 A;  4AZC A;  4EZU A;  3CKD A;  1MJG A;  2YKT A;  2Z8Y A;  3B52 X;  3DPO A;  3EJQ A;  1X04 A;  3DX4 A;  1GNT A;  3VEA A;  2QKW A;  4EZO A;  2Q12 A;  4EZT A;  4D8J A;  1X03 A;  4ATM A;  3T49 A;  3ACO A;  2F7R A;  4FM3 A;  1I49 A;  3DX3 A;  1TQW A;  4BNE A;  2OZN B;  5C5B A;  4UDY X;  3QWE A;  1TQS A;  2V0O A;  3T47 A;  4IM2 A;  5TKY A;  4HR1 A;  2ELB A;  3D4Z A;  2Q13 A;  3PLT A;  3BUQ A;  1ZWW A;  1OAO A;  3VKH A;  3OK8 A;  2ND1 A;  3OHX M;  2QFF A;  4NSW A;  2JNK A;  2YIB A;  3LLL A;  3BVU A;  1SUF A;  3VEB A;  2RAK A;  3HAH A;  4E81 A;  1W9M A;  4UDX X;  1LQ7 A;  4EZV A;  2EFK A;  3DPQ A;  1DKZ A;  3HAI A;  3QNI A;  1R5E A;  4H8S A;  2YL6 A;  2LXY A;  2QXL A;  2YI8 A;  4JL9 A;  3B51 X;  3I39 X;  3UIT A;  2RAI A;  2EWF A;  1QWU A;  3HAJ A;  4AZ6 A;  4JNF A;  3KDR A;  3DX1 A;  2OBM A;  3D4Y A;  2OO2 A;  3LVT A;  3I01 A;  4FZO A;  1UPX A;  4EZP A;  2NCZ A;  4JWI A;  1SU8 A;  1JQK A;  3RPM A;  1R33 A;  4WPE A;  4AZ5 A;  4EZR A;  1HWW A;  4F00 A;  5FIG A;  3ZED A;  3DX2 A;  1U00 A;  3O3O B;  2JNS A;  2RAJ A;  3ER9 B;  2YL9 A;  2X3X A;  4KIK B;  2RT6 A;  4JWC A;  2D4C A;  2F7O A;  3KAV A;  3CVR A;  3EJP A;  4I1Q A;  4EZQ A;  4H6H A;  2F1B A;  1HTY A;  3I2W A;  1I4T A;  1O7D C;  4AVM A;  3ER8 C;  3DX0 A;  4IW0 A;  4IM3 A;  4AZB A;  4EZW A;  2KHO A;  2N3K A;  3ABH A;  3Q0K A;  2X3V A;  3F7W A;  1YWM A;  2X3W A;  4EZY A;  1TQV A;  1TQT A;  3DDG A;  1OA1 A;  1E1D A;  3OWG A;  2YL8 A;  3D51 A;  3CZS A;  2LM0 A;  2GAF D;  3EJU A;  1I4L A;  2OW7 A;  4AZG A;  4AKV A;  3LMF A;  2GA9 D;  3ERC C;  1HXK A;  3BVT A;  1O7D B;  4IWQ A;  3CV5 A;  1Y2O A;  4JWD A;  3CZN A;  4NPH A;  4H6I A;  1TQU A;  4DCN C;  1PS3 A;  2OW6 A;  3QE6 A;  2YLL A;  4E3C A;  1ZYL A;  1I4D A;  1GN9 A;  2Z0O A;  3B53 X;  1R34 A;  3C7N A;  3EJR A;  4KIK A;  4R5L A;  2YLA A;  4EZS A;  4R5I A;  4IWP A;  3QA8 A;  4NQI A;  3T46 A;  2F7P A;  4EZZ A;  3QNJ A;  4AZ7 A;  1E2U A;  1SU6 A;  4M0M A;  3DDF A;  3EJT A;  5E84 A;  2F18 A;  2FIC A;  2C08 A;  3FD9 A;  4B9Q A;  3SYV A;  1DKY A;  2WYI A;  2WIN M;  3O3M B;  4JNE A;  3BUI A;  4JWE A;  1SU7 A;  4IWO A;  2YIA A;  4WPC A;  3I04 A;  3T4A G;  4AZH A;  4EZX A;  2F7Q A;  2O0I 1;  3RV0 A;  2YL5 A;  2ZXQ A;  4HYB A;  2WYH A;  2ND0 A;  1OA0 A;  1GNL A;  3BUB A;  3D52 A;  4HY9 A;  4R5K A;  2PY6 A;  3BUD A;  4AZC B;  3L3P A;  4FZP A;  3L3O M;  1URU A;  3D2F A;  3G9G A;  3GI7 A;  1WDZ A;  3O3N B;  3CAZ A;  1QWN A;  3BUP A;  2YIV X;  3BVW A;  3DYT A;  3Q84 A;  2F1A A;  5FLE X;  4F01 A;  2EFL A;  2PMR A;  2ALW A;  2FYV A;  2X5C A;  4DYL A;  2OBL A;  4JN4 A;  3SOG A;  3A98 A;  4AZI A;  3T48 A;  4G6Q A;  4FZS A;  2Z0N A;  2D1L A;  5C5B B;  3KAW A;  3BVX A;  3D50 A;  4HR1 B; 
#chains in the Genus database with same CATH homology
 3SOG A;  3M3W A;  4NSW A;  2C08 A;  2RAJ A;  5C5B A;  2EFK A;  2Z0V A;  2Q12 A;  3CAZ A;  3QWE A;  1I4L A;  2V0O A;  3HAI A;  3QNI A;  4DCN C;  3SYV A;  2X3X A;  3QE6 A;  4AKV A;  3DYT A;  1X03 A;  3Q84 A;  4H8S A;  4ATM A;  2ELB A;  1I4D A;  2D4C A;  3ABH A;  3Q0K A;  2YKT A;  3LLL A;  4FZS A;  2Z0O A;  2Z0N A;  2Q13 A;  3ACO A;  3PLT A;  2D1L A;  2EFL A;  1ZWW A;  2X3V A;  4WPE A;  2RAK A;  5C5B B;  1I49 A;  4I1Q A;  2RAI A;  3HAH A;  2X3W A;  1Y2O A;  1X04 A;  4WPC A;  4DYL A;  1URU A;  3G9G A;  3HAJ A;  3I2W A;  1I4T A;  1WDZ A;  4AVM A;  3OK8 A;  2FIC A;  4BNE A;  4NQI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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