3ADYA

Crystal structure of dotd from legionella
Total Genus 30
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
125
structure length
102
Chain Sequence
ATIKLASKDNTLTIPNAYNLQARASVDWSGPIEELTARIAKAAHFRFRVLGKSPSVPVLISISTKDESLAEILRDIDYQAGKKASIHVYPNSQVVELRYAKI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Proton transport
molecule keywords DotD
publication title Crystal structure of Legionella DotD: insights into the relationship between type IVB and type II/III secretion systems
pubmed doi rcsb
source organism Legionella pneumophila
total genus 30
structure length 102
sequence length 125
ec nomenclature
pdb deposition date 2010-01-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16816 DotD DotD protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.55.50.60 Alpha Beta 3-Layer(bab) Sandwich Phage tail protein beta-alpha-beta fold Phage tail protein beta-alpha-beta fold 3adyA00
3ADYA
chains in the Genus database with same CATH superfamily
4M0NA 1WRUA 3EZJA 3GS9A 2W76A 3ADYA 2A02A 4UHVA 2X531 1WTHD 4G08A 2D1UA 4AR0A 2WZPR 2Z6BD 1K28D 3CDDA 2IAHA 4MTKA 4JTMA 3GR5A 2W6TA 2W75A 3OV5A 2W78A 2W6UA 2L4WA 2M5JA 2O5PA 2W16A 2W77A 1ZZVA 4M0HA 3D37A 2P5ZX
chains in the Genus database with same CATH topology
4M0NA 3EZJA 3GS9A 2W76A 3ADYA 2A02A 2X531 1WTHD 4G08A 2D1UA 4AR0A 2WZPR 2Z6BD 1K28D 2IAHA 4JTMA 3GR5A 2W6TA 2W75A 3OV5A 2W78A 2W6UA 2L4WA 2M5JA 2O5PA 2W16A 2W77A 1ZZVA 4M0HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ADY A; 
#chains in the Genus database with same CATH topology
 4M0N A;  1WRU A;  3EZJ A;  3GS9 A;  2W76 A;  3ADY A;  2A02 A;  4UHV A;  2X53 1;  1WTH D;  4G08 A;  2D1U A;  4AR0 A;  2WZP R;  2Z6B D;  1K28 D;  3CDD A;  2IAH A;  4MTK A;  4JTM A;  3GR5 A;  2W6T A;  2W75 A;  3OV5 A;  2W78 A;  2W6U A;  2L4W A;  2M5J A;  2O5P A;  2W16 A;  2W77 A;  1ZZV A;  4M0H A;  3D37 A;  2P5Z X; 
#chains in the Genus database with same CATH homology
 4M0N A;  3EZJ A;  3GS9 A;  2W76 A;  3ADY A;  2A02 A;  2X53 1;  1WTH D;  4G08 A;  2D1U A;  4AR0 A;  2WZP R;  2Z6B D;  1K28 D;  2IAH A;  4JTM A;  3GR5 A;  2W6T A;  2W75 A;  3OV5 A;  2W78 A;  2W6U A;  2L4W A;  2M5J A;  2O5P A;  2W16 A;  2W77 A;  1ZZV A;  4M0H A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...