3AE1D

Crystal structure of porcine heart mitochondrial complex ii bound with n-phenyl-2-(trifluoromethyl)-benzamide
Total Genus 38
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
102
structure length
102
Chain Sequence
SSKAASLHWTGERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGIGQVVTDYVRGDALQKAAKAGLLALSAFTFAGLCYFNYHDVGICKAVAMLWKL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Oxidoreductase/oxidoreductase inhibitor
molecule keywords Succinate dehydrogenase [ubiquinone] flavoprotein subunit, m
publication title Crystal structure of porcine heart mitochondrial complex II bound with N-Phenyl-2-(trifluoromethyl)-benzamide
rcsb
total genus 38
structure length 102
sequence length 102
ec nomenclature
pdb deposition date 2010-02-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1300.10 Mainly Alpha Up-down Bundle 3 helical TM bundles of succinate and fumarate reductases Fumarate reductase/succinate dehydrogenase, transmembrane subunit 3ae1D00
3AE5D 1L0VD 2WS3D 3AE1D 4YTMC 3AEFD 3AE9C 3SFEC 1YQ3D 4YTMD 3VR9C 1E7PC 3AE9D 3SFED 3VR9D 3AE6C 3SFDD 3AE6D 2FBWC 3AE8C 2FBWD 2BS4C 3VRAD 3AE8D 3P4PC 5C2TC 1ZP0C 4YTNC 3P4PD 3VR8C 1NEKC 2WDQC 1QLBC 5C3JC 4YTPC 4YTPD 3VRBC 2WDRC 2H89C 2BS2C 2H89D 2WU5C 4YT0C 2WU5D 3AE3C 3P4QC 4YSZC 2WU2C 3AEBC 3P4QD 3ABVC 3ABVD 3AEAC 5C2TD 3AE7C 1YQ4C 1ZP0D 4YTND 4YXDC 3VR8D 3AE7D 4YXDD 3AE2C 1NEKD 2WDQD 3AEEC 3AE4C 5C3JD 2ACZC 3AEED 3AE4D 4KX6C 1KFYC 2WDVC 3VRBD 2WDRD 4KX6D 4YSXC 2WDVD 1ZOYC 3AECC 4YSYC 1NENC 1ZOYD 2BS3C 3AECD 1L0VC 4YT0D 3P4RC 2B76C 3AE1C 3AEFC 3AE3D 4YSZD 3AEBD 2WU2D 3P4RD 1YQ3C 2B76D 2H88C 2WP9C 3SFDC 3AEAD 1YQ4D 2H88D 3AEGC 2WP9D 3AEGD 2WQYC 3AE2D 2WQYD 3P4SC 1KF6C 3CIRC 2ACZD 3AEDC 3VRAC 3P4SD 1KF6D 1KFYD 3CIRD 3AEDD 4YSXD 3AE5C 2WS3C 4YSYD 1NEND
chains in the Genus database with same CATH superfamily
3AE5D 1L0VD 2WS3D 3VONA 3AE1D 4YTMC 3AEFD 3AE9C 3SFEC 1YQ3D 4YTMD 3VR9C 1E7PC 3AE9D 3SFED 3VR9D 3AE6C 3SFDD 4DHIB 3AE6D 2FBWC 4FJVA 4DDGA 3AE8C 2FBWD 2BS4C 3VRAD 3AE8D 3P4PC 5C2TC 1ZP0C 4YTNC 3P4PD 3VR8C 1NEKC 2WDQC 1QLBC 4DDIA 5C3JC 4YTPC 4YTPD 3VRBC 2WDRC 2H89C 2BS2C 2H89D 2WU5C 4YT0C 2WU5D 3AE3C 3P4QC 4YSZC 2WU2C 3AEBC 3P4QD 3ABVC 3ABVD 3AEAC 5C2TD 3AE7C 1YQ4C 1ZP0D 4YTND 4YXDC 3VR8D 3AE7D 4DHJA 4YXDD 3AE2C 1NEKD 2WDQD 3AEEC 3AE4C 5C3JD 2ACZC 3AEED 3AE4D 4KX6C 1KFYC 2WDVC 3VRBD 2WDRD 2ZFYA 4KX6D 4YSXC 4I6LA 2WDVD 1ZOYC 3AECC 4YSYC 1NENC 1ZOYD 2BS3C 3AECD 1L0VC 4YT0D 3P4RC 2B76C 3AE1C 3AEFC 3AE3D 4YSZD 3AEBD 2WU2D 3P4RD 1YQ3C 2B76D 2H88C 4LDTA 2WP9C 3SFDC 1TFFA 3AEAD 1YQ4D 2H88D 3AEGC 4DHZA 2WP9D 3AEGD 2WQYC 3AE2D 2WQYD 3P4SC 1KF6C 3CIRC 2ACZD 3AEDC 3VRAC 3P4SD 1KF6D 1KFYD 3CIRD 3AEDD 4YSXD 3AE5C 2WS3C 4YSYD 1NEND
chains in the Genus database with same CATH topology
3AE5D 1L0VD 2WS3D 3AE1D 4YTMC 3AEFD 3AE9C 3SFEC 1YQ3D 4YTMD 3VR9C 1E7PC 3AE9D 3SFED 3VR9D 3AE6C 3SFDD 3AE6D 2FBWC 3AE8C 2FBWD 2BS4C 3VRAD 3AE8D 3P4PC 5C2TC 1ZP0C 4YTNC 3P4PD 3VR8C 1NEKC 2WDQC 1QLBC 5C3JC 4YTPC 4YTPD 3VRBC 2WDRC 2H89C 2BS2C 2H89D 2WU5C 4YT0C 2WU5D 3AE3C 3P4QC 4YSZC 2WU2C 3AEBC 3P4QD 3ABVC 3ABVD 3AEAC 5C2TD 3AE7C 1YQ4C 1ZP0D 4YTND 4YXDC 3VR8D 3AE7D 4YXDD 3AE2C 1NEKD 2WDQD 3AEEC 3AE4C 5C3JD 2ACZC 3AEED 3AE4D 4KX6C 1KFYC 2WDVC 3VRBD 2WDRD 4KX6D 4YSXC 2WDVD 1ZOYC 3AECC 4YSYC 1NENC 1ZOYD 2BS3C 3AECD 1L0VC 4YT0D 3P4RC 2B76C 3AE1C 3AEFC 3AE3D 4YSZD 3AEBD 2WU2D 3P4RD 1YQ3C 2B76D 2H88C 2WP9C 3SFDC 3AEAD 1YQ4D 2H88D 3AEGC 2WP9D 3AEGD 2WQYC 3AE2D 2WQYD 3P4SC 1KF6C 3CIRC 2ACZD 3AEDC 3VRAC 3P4SD 1KF6D 1KFYD 3CIRD 3AEDD 4YSXD 3AE5C 2WS3C 4YSYD 1NEND
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AE5 D;  1L0V D;  2WS3 D;  3AE1 D;  4YTM C;  3AEF D;  3AE9 C;  3SFE C;  1YQ3 D;  4YTM D;  3VR9 C;  1E7P C;  3AE9 D;  3SFE D;  3VR9 D;  3AE6 C;  3SFD D;  3AE6 D;  2FBW C;  3AE8 C;  2FBW D;  2BS4 C;  3VRA D;  3AE8 D;  3P4P C;  5C2T C;  1ZP0 C;  4YTN C;  3P4P D;  3VR8 C;  1NEK C;  2WDQ C;  1QLB C;  5C3J C;  4YTP C;  4YTP D;  3VRB C;  2WDR C;  2H89 C;  2BS2 C;  2H89 D;  2WU5 C;  4YT0 C;  2WU5 D;  3AE3 C;  3P4Q C;  4YSZ C;  2WU2 C;  3AEB C;  3P4Q D;  3ABV C;  3ABV D;  3AEA C;  5C2T D;  3AE7 C;  1YQ4 C;  1ZP0 D;  4YTN D;  4YXD C;  3VR8 D;  3AE7 D;  4YXD D;  3AE2 C;  1NEK D;  2WDQ D;  3AEE C;  3AE4 C;  5C3J D;  2ACZ C;  3AEE D;  3AE4 D;  4KX6 C;  1KFY C;  2WDV C;  3VRB D;  2WDR D;  4KX6 D;  4YSX C;  2WDV D;  1ZOY C;  3AEC C;  4YSY C;  1NEN C;  1ZOY D;  2BS3 C;  3AEC D;  1L0V C;  4YT0 D;  3P4R C;  2B76 C;  3AE1 C;  3AEF C;  3AE3 D;  4YSZ D;  3AEB D;  2WU2 D;  3P4R D;  1YQ3 C;  2B76 D;  2H88 C;  2WP9 C;  3SFD C;  3AEA D;  1YQ4 D;  2H88 D;  3AEG C;  2WP9 D;  3AEG D;  2WQY C;  3AE2 D;  2WQY D;  3P4S C;  1KF6 C;  3CIR C;  2ACZ D;  3AED C;  3VRA C;  3P4S D;  1KF6 D;  1KFY D;  3CIR D;  3AED D;  4YSX D;  3AE5 C;  2WS3 C;  4YSY D;  1NEN D; 
#chains in the Genus database with same CATH topology
 3AE5 D;  1L0V D;  2WS3 D;  3VON A;  3AE1 D;  4YTM C;  3AEF D;  3AE9 C;  3SFE C;  1YQ3 D;  4YTM D;  3VR9 C;  1E7P C;  3AE9 D;  3SFE D;  3VR9 D;  3AE6 C;  3SFD D;  4DHI B;  3AE6 D;  2FBW C;  4FJV A;  4DDG A;  3AE8 C;  2FBW D;  2BS4 C;  3VRA D;  3AE8 D;  3P4P C;  5C2T C;  1ZP0 C;  4YTN C;  3P4P D;  3VR8 C;  1NEK C;  2WDQ C;  1QLB C;  4DDI A;  5C3J C;  4YTP C;  4YTP D;  3VRB C;  2WDR C;  2H89 C;  2BS2 C;  2H89 D;  2WU5 C;  4YT0 C;  2WU5 D;  3AE3 C;  3P4Q C;  4YSZ C;  2WU2 C;  3AEB C;  3P4Q D;  3ABV C;  3ABV D;  3AEA C;  5C2T D;  3AE7 C;  1YQ4 C;  1ZP0 D;  4YTN D;  4YXD C;  3VR8 D;  3AE7 D;  4DHJ A;  4YXD D;  3AE2 C;  1NEK D;  2WDQ D;  3AEE C;  3AE4 C;  5C3J D;  2ACZ C;  3AEE D;  3AE4 D;  4KX6 C;  1KFY C;  2WDV C;  3VRB D;  2WDR D;  2ZFY A;  4KX6 D;  4YSX C;  4I6L A;  2WDV D;  1ZOY C;  3AEC C;  4YSY C;  1NEN C;  1ZOY D;  2BS3 C;  3AEC D;  1L0V C;  4YT0 D;  3P4R C;  2B76 C;  3AE1 C;  3AEF C;  3AE3 D;  4YSZ D;  3AEB D;  2WU2 D;  3P4R D;  1YQ3 C;  2B76 D;  2H88 C;  4LDT A;  2WP9 C;  3SFD C;  1TFF A;  3AEA D;  1YQ4 D;  2H88 D;  3AEG C;  4DHZ A;  2WP9 D;  3AEG D;  2WQY C;  3AE2 D;  2WQY D;  3P4S C;  1KF6 C;  3CIR C;  2ACZ D;  3AED C;  3VRA C;  3P4S D;  1KF6 D;  1KFY D;  3CIR D;  3AED D;  4YSX D;  3AE5 C;  2WS3 C;  4YSY D;  1NEN D; 
#chains in the Genus database with same CATH homology
 3AE5 D;  1L0V D;  2WS3 D;  3AE1 D;  4YTM C;  3AEF D;  3AE9 C;  3SFE C;  1YQ3 D;  4YTM D;  3VR9 C;  1E7P C;  3AE9 D;  3SFE D;  3VR9 D;  3AE6 C;  3SFD D;  3AE6 D;  2FBW C;  3AE8 C;  2FBW D;  2BS4 C;  3VRA D;  3AE8 D;  3P4P C;  5C2T C;  1ZP0 C;  4YTN C;  3P4P D;  3VR8 C;  1NEK C;  2WDQ C;  1QLB C;  5C3J C;  4YTP C;  4YTP D;  3VRB C;  2WDR C;  2H89 C;  2BS2 C;  2H89 D;  2WU5 C;  4YT0 C;  2WU5 D;  3AE3 C;  3P4Q C;  4YSZ C;  2WU2 C;  3AEB C;  3P4Q D;  3ABV C;  3ABV D;  3AEA C;  5C2T D;  3AE7 C;  1YQ4 C;  1ZP0 D;  4YTN D;  4YXD C;  3VR8 D;  3AE7 D;  4YXD D;  3AE2 C;  1NEK D;  2WDQ D;  3AEE C;  3AE4 C;  5C3J D;  2ACZ C;  3AEE D;  3AE4 D;  4KX6 C;  1KFY C;  2WDV C;  3VRB D;  2WDR D;  4KX6 D;  4YSX C;  2WDV D;  1ZOY C;  3AEC C;  4YSY C;  1NEN C;  1ZOY D;  2BS3 C;  3AEC D;  1L0V C;  4YT0 D;  3P4R C;  2B76 C;  3AE1 C;  3AEF C;  3AE3 D;  4YSZ D;  3AEB D;  2WU2 D;  3P4R D;  1YQ3 C;  2B76 D;  2H88 C;  2WP9 C;  3SFD C;  3AEA D;  1YQ4 D;  2H88 D;  3AEG C;  2WP9 D;  3AEG D;  2WQY C;  3AE2 D;  2WQY D;  3P4S C;  1KF6 C;  3CIR C;  2ACZ D;  3AED C;  3VRA C;  3P4S D;  1KF6 D;  1KFY D;  3CIR D;  3AED D;  4YSX D;  3AE5 C;  2WS3 C;  4YSY D;  1NEN D; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...