3AEBD

Crystal structure of porcine heart mitochondrial complex ii bound with n-(3-phenoxy-phenyl)-2-trifluoromethyl-benzamide
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
102
structure length
102
Chain Sequence
SSKAASLHWTGERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGIGQVVTDYVRGDALQKAAKAGLLALSAFTFAGLCYFNYHDVGICKAVAMLWKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of porcine heart mitochondrial complex II bound with N-(3-Phenoxy-phenyl)-2-trifluoromethyl-benzamide
rcsb
molecule tags Oxidoreductase/oxidoreductase inhibitor
molecule keywords Succinate dehydrogenase [ubiquinone] flavoprotein subunit, m
total genus 43
structure length 102
sequence length 102
ec nomenclature
pdb deposition date 2010-02-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1300.10 Mainly Alpha Up-down Bundle 3 helical TM bundles of succinate and fumarate reductases Fumarate reductase/succinate dehydrogenase, transmembrane subunit 3aebD00
2WU5D 2BS3C 1KF6C 3AE7D 1YQ3C 1ZOYD 4YTPC 2WDVD 3VRAC 5C2TD 3P4QC 1ZP0D 2H88C 3AE7C 2WQYD 3VRBD 4YSXD 4YTMC 3VR8C 2WU2D 1ZOYC 2BS2C 3AECD 2FBWD 3AEBC 3AEDD 2WDVC 2WDQC 3VR9D 5C2TC 1ZP0C 4KX6D 3VRBC 1NEKC 3SFDD 3AE3D 2WU2C 1NENC 2FBWC 3VR9C 3P4RC 4YSZC 5C3JD 1L0VC 4KX6C 3AE5D 3SFED 3AE1C 3AE4C 2H89D 2WU5C 3AE3C 1KFYD 4YXDD 2WS3D 3AEAD 2WP9D 3CIRD 4YTND 1E7PC 3AE9D 2B76D 3SFEC 2WQYC 4YT0D 4YSXC 4YSYD 2WDRD 3AECC 2WS3C 3AEDC 4YTNC 3P4PD 3AE2D 3AEFD 1KF6D 1YQ3D 3AEGD 3SFDC 3ABVD 3P4SD 2WDRC 5C3JC 3AE5C 1QLBC 2H88D 3AEED 2H89C 3AEGC 3ABVC 3P4SC 4YTMD 3AE6D 3VR8D 1KFYC 2ACZD 3AEBD 2WDQD 1YQ4D 4YXDC 3AEAC 2WP9C 3CIRC 3AE9C 2B76C 3AEEC 3AE8D 1NEKD 3AE6C 4YT0C 1NEND 2ACZC 4YSYC 2BS4C 1YQ4C 3P4RD 4YSZD 4YTPD 1L0VD 3P4PC 3AE2C 3VRAD 3AEFC 3P4QD 3AE1D 3AE8C 3AE4D
chains in the Genus database with same CATH superfamily
4LDTA 2WU5D 2BS3C 1KF6C 3AE7D 1YQ3C 1TFFA 1ZOYD 4YTPC 2WDVD 3VRAC 5C2TD 3P4QC 1ZP0D 2H88C 3AE7C 2WQYD 3VRBD 4YSXD 4YTMC 4I6LA 3VR8C 2WU2D 1ZOYC 2BS2C 3AECD 2FBWD 3AEBC 4DHJA 3AEDD 2WDVC 2WDQC 3VR9D 5C2TC 1ZP0C 4KX6D 3VRBC 1NEKC 3SFDD 3AE3D 2WU2C 1NENC 2FBWC 4DDGA 3VR9C 3P4RC 4YSZC 5C3JD 1L0VC 4KX6C 3AE5D 3SFED 3AE1C 3AE4C 2H89D 2WU5C 3AE3C 1KFYD 2ZFYA 4YXDD 2WS3D 3AEAD 2WP9D 3CIRD 4YTND 1E7PC 3AE9D 2B76D 3SFEC 2WQYC 4YT0D 4YSXC 4YSYD 2WDRD 3AECC 2WS3C 3AEDC 4YTNC 3P4PD 4DDIA 3AE2D 3AEFD 1KF6D 1YQ3D 3AEGD 3SFDC 4DHZA 3ABVD 3P4SD 2WDRC 4DHIB 5C3JC 3AE5C 1QLBC 2H88D 4FJVA 3AEED 2H89C 3AEGC 3ABVC 3P4SC 4YTMD 3AE6D 3VONA 3VR8D 1KFYC 2ACZD 3AEBD 2WDQD 1YQ4D 4YXDC 3AEAC 2WP9C 3CIRC 3AE9C 2B76C 3AEEC 3AE8D 1NEKD 3AE6C 4YT0C 1NEND 2ACZC 4YSYC 2BS4C 1YQ4C 3P4RD 4YSZD 4YTPD 1L0VD 3P4PC 3AE2C 3VRAD 3AEFC 3P4QD 3AE1D 3AE8C 3AE4D
chains in the Genus database with same CATH topology
2WU5D 2BS3C 1KF6C 3AE7D 1YQ3C 1ZOYD 4YTPC 2WDVD 3VRAC 5C2TD 3P4QC 1ZP0D 2H88C 3AE7C 2WQYD 3VRBD 4YSXD 4YTMC 3VR8C 2WU2D 1ZOYC 2BS2C 3AECD 2FBWD 3AEBC 3AEDD 2WDVC 2WDQC 3VR9D 5C2TC 1ZP0C 4KX6D 3VRBC 1NEKC 3SFDD 3AE3D 2WU2C 1NENC 2FBWC 3VR9C 3P4RC 4YSZC 5C3JD 1L0VC 4KX6C 3AE5D 3SFED 3AE1C 3AE4C 2H89D 2WU5C 3AE3C 1KFYD 4YXDD 2WS3D 3AEAD 2WP9D 3CIRD 4YTND 1E7PC 3AE9D 2B76D 3SFEC 2WQYC 4YT0D 4YSXC 4YSYD 2WDRD 3AECC 2WS3C 3AEDC 4YTNC 3P4PD 3AE2D 3AEFD 1KF6D 1YQ3D 3AEGD 3SFDC 3ABVD 3P4SD 2WDRC 5C3JC 3AE5C 1QLBC 2H88D 3AEED 2H89C 3AEGC 3ABVC 3P4SC 4YTMD 3AE6D 3VR8D 1KFYC 2ACZD 3AEBD 2WDQD 1YQ4D 4YXDC 3AEAC 2WP9C 3CIRC 3AE9C 2B76C 3AEEC 3AE8D 1NEKD 3AE6C 4YT0C 1NEND 2ACZC 4YSYC 2BS4C 1YQ4C 3P4RD 4YSZD 4YTPD 1L0VD 3P4PC 3AE2C 3VRAD 3AEFC 3P4QD 3AE1D 3AE8C 3AE4D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WU5 D;  2BS3 C;  1KF6 C;  3AE7 D;  1YQ3 C;  1ZOY D;  4YTP C;  2WDV D;  3VRA C;  5C2T D;  3P4Q C;  1ZP0 D;  2H88 C;  3AE7 C;  2WQY D;  3VRB D;  4YSX D;  4YTM C;  3VR8 C;  2WU2 D;  1ZOY C;  2BS2 C;  3AEC D;  2FBW D;  3AEB C;  3AED D;  2WDV C;  2WDQ C;  3VR9 D;  5C2T C;  1ZP0 C;  4KX6 D;  3VRB C;  1NEK C;  3SFD D;  3AE3 D;  2WU2 C;  1NEN C;  2FBW C;  3VR9 C;  3P4R C;  4YSZ C;  5C3J D;  1L0V C;  4KX6 C;  3AE5 D;  3SFE D;  3AE1 C;  3AE4 C;  2H89 D;  2WU5 C;  3AE3 C;  1KFY D;  4YXD D;  2WS3 D;  3AEA D;  2WP9 D;  3CIR D;  4YTN D;  1E7P C;  3AE9 D;  2B76 D;  3SFE C;  2WQY C;  4YT0 D;  4YSX C;  4YSY D;  2WDR D;  3AEC C;  2WS3 C;  3AED C;  4YTN C;  3P4P D;  3AE2 D;  3AEF D;  1KF6 D;  1YQ3 D;  3AEG D;  3SFD C;  3ABV D;  3P4S D;  2WDR C;  5C3J C;  3AE5 C;  1QLB C;  2H88 D;  3AEE D;  2H89 C;  3AEG C;  3ABV C;  3P4S C;  4YTM D;  3AE6 D;  3VR8 D;  1KFY C;  2ACZ D;  3AEB D;  2WDQ D;  1YQ4 D;  4YXD C;  3AEA C;  2WP9 C;  3CIR C;  3AE9 C;  2B76 C;  3AEE C;  3AE8 D;  1NEK D;  3AE6 C;  4YT0 C;  1NEN D;  2ACZ C;  4YSY C;  2BS4 C;  1YQ4 C;  3P4R D;  4YSZ D;  4YTP D;  1L0V D;  3P4P C;  3AE2 C;  3VRA D;  3AEF C;  3P4Q D;  3AE1 D;  3AE8 C;  3AE4 D; 
#chains in the Genus database with same CATH topology
 4LDT A;  2WU5 D;  2BS3 C;  1KF6 C;  3AE7 D;  1YQ3 C;  1TFF A;  1ZOY D;  4YTP C;  2WDV D;  3VRA C;  5C2T D;  3P4Q C;  1ZP0 D;  2H88 C;  3AE7 C;  2WQY D;  3VRB D;  4YSX D;  4YTM C;  4I6L A;  3VR8 C;  2WU2 D;  1ZOY C;  2BS2 C;  3AEC D;  2FBW D;  3AEB C;  4DHJ A;  3AED D;  2WDV C;  2WDQ C;  3VR9 D;  5C2T C;  1ZP0 C;  4KX6 D;  3VRB C;  1NEK C;  3SFD D;  3AE3 D;  2WU2 C;  1NEN C;  2FBW C;  4DDG A;  3VR9 C;  3P4R C;  4YSZ C;  5C3J D;  1L0V C;  4KX6 C;  3AE5 D;  3SFE D;  3AE1 C;  3AE4 C;  2H89 D;  2WU5 C;  3AE3 C;  1KFY D;  2ZFY A;  4YXD D;  2WS3 D;  3AEA D;  2WP9 D;  3CIR D;  4YTN D;  1E7P C;  3AE9 D;  2B76 D;  3SFE C;  2WQY C;  4YT0 D;  4YSX C;  4YSY D;  2WDR D;  3AEC C;  2WS3 C;  3AED C;  4YTN C;  3P4P D;  4DDI A;  3AE2 D;  3AEF D;  1KF6 D;  1YQ3 D;  3AEG D;  3SFD C;  4DHZ A;  3ABV D;  3P4S D;  2WDR C;  4DHI B;  5C3J C;  3AE5 C;  1QLB C;  2H88 D;  4FJV A;  3AEE D;  2H89 C;  3AEG C;  3ABV C;  3P4S C;  4YTM D;  3AE6 D;  3VON A;  3VR8 D;  1KFY C;  2ACZ D;  3AEB D;  2WDQ D;  1YQ4 D;  4YXD C;  3AEA C;  2WP9 C;  3CIR C;  3AE9 C;  2B76 C;  3AEE C;  3AE8 D;  1NEK D;  3AE6 C;  4YT0 C;  1NEN D;  2ACZ C;  4YSY C;  2BS4 C;  1YQ4 C;  3P4R D;  4YSZ D;  4YTP D;  1L0V D;  3P4P C;  3AE2 C;  3VRA D;  3AEF C;  3P4Q D;  3AE1 D;  3AE8 C;  3AE4 D; 
#chains in the Genus database with same CATH homology
 2WU5 D;  2BS3 C;  1KF6 C;  3AE7 D;  1YQ3 C;  1ZOY D;  4YTP C;  2WDV D;  3VRA C;  5C2T D;  3P4Q C;  1ZP0 D;  2H88 C;  3AE7 C;  2WQY D;  3VRB D;  4YSX D;  4YTM C;  3VR8 C;  2WU2 D;  1ZOY C;  2BS2 C;  3AEC D;  2FBW D;  3AEB C;  3AED D;  2WDV C;  2WDQ C;  3VR9 D;  5C2T C;  1ZP0 C;  4KX6 D;  3VRB C;  1NEK C;  3SFD D;  3AE3 D;  2WU2 C;  1NEN C;  2FBW C;  3VR9 C;  3P4R C;  4YSZ C;  5C3J D;  1L0V C;  4KX6 C;  3AE5 D;  3SFE D;  3AE1 C;  3AE4 C;  2H89 D;  2WU5 C;  3AE3 C;  1KFY D;  4YXD D;  2WS3 D;  3AEA D;  2WP9 D;  3CIR D;  4YTN D;  1E7P C;  3AE9 D;  2B76 D;  3SFE C;  2WQY C;  4YT0 D;  4YSX C;  4YSY D;  2WDR D;  3AEC C;  2WS3 C;  3AED C;  4YTN C;  3P4P D;  3AE2 D;  3AEF D;  1KF6 D;  1YQ3 D;  3AEG D;  3SFD C;  3ABV D;  3P4S D;  2WDR C;  5C3J C;  3AE5 C;  1QLB C;  2H88 D;  3AEE D;  2H89 C;  3AEG C;  3ABV C;  3P4S C;  4YTM D;  3AE6 D;  3VR8 D;  1KFY C;  2ACZ D;  3AEB D;  2WDQ D;  1YQ4 D;  4YXD C;  3AEA C;  2WP9 C;  3CIR C;  3AE9 C;  2B76 C;  3AEE C;  3AE8 D;  1NEK D;  3AE6 C;  4YT0 C;  1NEN D;  2ACZ C;  4YSY C;  2BS4 C;  1YQ4 C;  3P4R D;  4YSZ D;  4YTP D;  1L0V D;  3P4P C;  3AE2 C;  3VRA D;  3AEF C;  3P4Q D;  3AE1 D;  3AE8 C;  3AE4 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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