3AEFD

Crystal structure of porcine heart mitochondrial complex ii with an empty quinone-binding pocket
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
102
structure length
102
Chain Sequence
SSKAASLHWTGERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGIGQVVTDYVRGDALQKAAKAGLLALSAFTFAGLCYFNYHDVGICKAVAMLWKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Succinate dehydrogenase [ubiquinone] flavoprotein subunit, m
publication title Crystal structure of porcine heart mitochondrial complex II with an empty quinone-binding pocket
rcsb
total genus 39
structure length 102
sequence length 102
ec nomenclature
pdb deposition date 2010-02-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1300.10 Mainly Alpha Up-down Bundle 3 helical TM bundles of succinate and fumarate reductases Fumarate reductase/succinate dehydrogenase, transmembrane subunit 3aefD00
5C2TD 3CIRC 4YSYD 1ZP0D 3AEAD 3AE7D 5C3JD 1QLBC 2H88D 3P4SC 3AECC 1KFYD 3AE1C 3AEDC 2FBWD 3VR9C 4YSZC 3AE2C 2BS3C 2ACZD 3CIRD 3AEBC 2WDRC 3AEEC 1L0VC 1KF6D 4YSXC 3P4SD 3AECD 2WU2D 3AEGC 3VR9D 4YSZD 1E7PC 2BS4C 3AEFD 2H89C 2WP9C 3AE2D 2WDVC 3SFDD 3AEBD 2WDRD 2WQYD 3AE5C 3P4PD 1L0VD 4YXDC 2WU5C 3AE6C 4YSXD 3SFEC 1NENC 2H89D 3AE4C 4YT0C 3P4QC 3AE5D 3P4RC 3ABVC 3AE1D 3AEDD 2BS2C 1YQ3C 2WU5D 4YTPC 4YXDD 3VRBC 3AE6D 5C2TC 3VRAC 3SFED 3AE8C 1ZOYC 1ZP0C 3AEED 1NEND 3AEAC 3AE4D 4YT0D 2B76C 3P4QD 1YQ4C 2H88C 3AE9C 3P4RD 3ABVD 3AEGD 1YQ3D 1NEKC 2WS3C 2WDQC 2WP9D 3VRAD 2WDVD 3AE8D 1ZOYD 4KX6C 4YTNC 1KF6C 4YTMC 2B76D 1YQ4D 3VR8C 3AE3C 3AE9D 2WU2C 4YSYC 1NEKD 2WS3D 3AEFC 2WDQD 2ACZC 3AE7C 3SFDC 4KX6D 2WQYC 5C3JC 3P4PC 1KFYC 2FBWC 4YTND 4YTPD 4YTMD 3VRBD 3VR8D 3AE3D
chains in the Genus database with same CATH superfamily
5C2TD 4FJVA 3CIRC 4YSYD 1ZP0D 3AEAD 3AE7D 5C3JD 1QLBC 2H88D 3P4SC 3AECC 1KFYD 3AE1C 3AEDC 2FBWD 3VR9C 4YSZC 3AE2C 2BS3C 2ACZD 3CIRD 3AEBC 2WDRC 3AEEC 1L0VC 3VONA 1KF6D 4YSXC 3P4SD 3AECD 2WU2D 3AEGC 3VR9D 4YSZD 1E7PC 2BS4C 3AEFD 2H89C 2WP9C 3AE2D 2WDVC 3SFDD 3AEBD 2WDRD 2WQYD 3AE5C 3P4PD 1L0VD 4DDGA 4YXDC 2WU5C 4LDTA 4DDIA 3AE6C 4YSXD 3SFEC 1NENC 2H89D 3AE4C 4YT0C 3P4QC 3AE5D 3P4RC 3ABVC 3AE1D 3AEDD 2BS2C 1YQ3C 2WU5D 4YTPC 4DHZA 3VRBC 4DHJA 4YXDD 3AE6D 5C2TC 3VRAC 3SFED 1TFFA 3AE8C 1ZOYC 4I6LA 1ZP0C 3AEED 1NEND 2ZFYA 3AEAC 3AE4D 4YT0D 2B76C 3P4QD 1YQ4C 2H88C 3AE9C 3P4RD 3ABVD 3AEGD 1YQ3D 1NEKC 2WS3C 2WDQC 2WP9D 3VRAD 2WDVD 3AE8D 1ZOYD 4KX6C 4YTNC 1KF6C 4YTMC 2B76D 1YQ4D 3VR8C 3AE3C 3AE9D 2WU2C 4YSYC 1NEKD 2WS3D 3AEFC 2WDQD 2ACZC 3AE7C 3SFDC 4DHIB 4KX6D 2WQYC 5C3JC 3P4PC 1KFYC 2FBWC 4YTND 4YTPD 4YTMD 3VRBD 3VR8D 3AE3D
chains in the Genus database with same CATH topology
5C2TD 3CIRC 4YSYD 1ZP0D 3AEAD 3AE7D 5C3JD 1QLBC 2H88D 3P4SC 3AECC 1KFYD 3AE1C 3AEDC 2FBWD 3VR9C 4YSZC 3AE2C 2BS3C 2ACZD 3CIRD 3AEBC 2WDRC 3AEEC 1L0VC 1KF6D 4YSXC 3P4SD 3AECD 2WU2D 3AEGC 3VR9D 4YSZD 1E7PC 2BS4C 3AEFD 2H89C 2WP9C 3AE2D 2WDVC 3SFDD 3AEBD 2WDRD 2WQYD 3AE5C 3P4PD 1L0VD 4YXDC 2WU5C 3AE6C 4YSXD 3SFEC 1NENC 2H89D 3AE4C 4YT0C 3P4QC 3AE5D 3P4RC 3ABVC 3AE1D 3AEDD 2BS2C 1YQ3C 2WU5D 4YTPC 4YXDD 3VRBC 3AE6D 5C2TC 3VRAC 3SFED 3AE8C 1ZOYC 1ZP0C 3AEED 1NEND 3AEAC 3AE4D 4YT0D 2B76C 3P4QD 1YQ4C 2H88C 3AE9C 3P4RD 3ABVD 3AEGD 1YQ3D 1NEKC 2WS3C 2WDQC 2WP9D 3VRAD 2WDVD 3AE8D 1ZOYD 4KX6C 4YTNC 1KF6C 4YTMC 2B76D 1YQ4D 3VR8C 3AE3C 3AE9D 2WU2C 4YSYC 1NEKD 2WS3D 3AEFC 2WDQD 2ACZC 3AE7C 3SFDC 4KX6D 2WQYC 5C3JC 3P4PC 1KFYC 2FBWC 4YTND 4YTPD 4YTMD 3VRBD 3VR8D 3AE3D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5C2T D;  3CIR C;  4YSY D;  1ZP0 D;  3AEA D;  3AE7 D;  5C3J D;  1QLB C;  2H88 D;  3P4S C;  3AEC C;  1KFY D;  3AE1 C;  3AED C;  2FBW D;  3VR9 C;  4YSZ C;  3AE2 C;  2BS3 C;  2ACZ D;  3CIR D;  3AEB C;  2WDR C;  3AEE C;  1L0V C;  1KF6 D;  4YSX C;  3P4S D;  3AEC D;  2WU2 D;  3AEG C;  3VR9 D;  4YSZ D;  1E7P C;  2BS4 C;  3AEF D;  2H89 C;  2WP9 C;  3AE2 D;  2WDV C;  3SFD D;  3AEB D;  2WDR D;  2WQY D;  3AE5 C;  3P4P D;  1L0V D;  4YXD C;  2WU5 C;  3AE6 C;  4YSX D;  3SFE C;  1NEN C;  2H89 D;  3AE4 C;  4YT0 C;  3P4Q C;  3AE5 D;  3P4R C;  3ABV C;  3AE1 D;  3AED D;  2BS2 C;  1YQ3 C;  2WU5 D;  4YTP C;  4YXD D;  3VRB C;  3AE6 D;  5C2T C;  3VRA C;  3SFE D;  3AE8 C;  1ZOY C;  1ZP0 C;  3AEE D;  1NEN D;  3AEA C;  3AE4 D;  4YT0 D;  2B76 C;  3P4Q D;  1YQ4 C;  2H88 C;  3AE9 C;  3P4R D;  3ABV D;  3AEG D;  1YQ3 D;  1NEK C;  2WS3 C;  2WDQ C;  2WP9 D;  3VRA D;  2WDV D;  3AE8 D;  1ZOY D;  4KX6 C;  4YTN C;  1KF6 C;  4YTM C;  2B76 D;  1YQ4 D;  3VR8 C;  3AE3 C;  3AE9 D;  2WU2 C;  4YSY C;  1NEK D;  2WS3 D;  3AEF C;  2WDQ D;  2ACZ C;  3AE7 C;  3SFD C;  4KX6 D;  2WQY C;  5C3J C;  3P4P C;  1KFY C;  2FBW C;  4YTN D;  4YTP D;  4YTM D;  3VRB D;  3VR8 D;  3AE3 D; 
#chains in the Genus database with same CATH topology
 5C2T D;  4FJV A;  3CIR C;  4YSY D;  1ZP0 D;  3AEA D;  3AE7 D;  5C3J D;  1QLB C;  2H88 D;  3P4S C;  3AEC C;  1KFY D;  3AE1 C;  3AED C;  2FBW D;  3VR9 C;  4YSZ C;  3AE2 C;  2BS3 C;  2ACZ D;  3CIR D;  3AEB C;  2WDR C;  3AEE C;  1L0V C;  3VON A;  1KF6 D;  4YSX C;  3P4S D;  3AEC D;  2WU2 D;  3AEG C;  3VR9 D;  4YSZ D;  1E7P C;  2BS4 C;  3AEF D;  2H89 C;  2WP9 C;  3AE2 D;  2WDV C;  3SFD D;  3AEB D;  2WDR D;  2WQY D;  3AE5 C;  3P4P D;  1L0V D;  4DDG A;  4YXD C;  2WU5 C;  4LDT A;  4DDI A;  3AE6 C;  4YSX D;  3SFE C;  1NEN C;  2H89 D;  3AE4 C;  4YT0 C;  3P4Q C;  3AE5 D;  3P4R C;  3ABV C;  3AE1 D;  3AED D;  2BS2 C;  1YQ3 C;  2WU5 D;  4YTP C;  4DHZ A;  3VRB C;  4DHJ A;  4YXD D;  3AE6 D;  5C2T C;  3VRA C;  3SFE D;  1TFF A;  3AE8 C;  1ZOY C;  4I6L A;  1ZP0 C;  3AEE D;  1NEN D;  2ZFY A;  3AEA C;  3AE4 D;  4YT0 D;  2B76 C;  3P4Q D;  1YQ4 C;  2H88 C;  3AE9 C;  3P4R D;  3ABV D;  3AEG D;  1YQ3 D;  1NEK C;  2WS3 C;  2WDQ C;  2WP9 D;  3VRA D;  2WDV D;  3AE8 D;  1ZOY D;  4KX6 C;  4YTN C;  1KF6 C;  4YTM C;  2B76 D;  1YQ4 D;  3VR8 C;  3AE3 C;  3AE9 D;  2WU2 C;  4YSY C;  1NEK D;  2WS3 D;  3AEF C;  2WDQ D;  2ACZ C;  3AE7 C;  3SFD C;  4DHI B;  4KX6 D;  2WQY C;  5C3J C;  3P4P C;  1KFY C;  2FBW C;  4YTN D;  4YTP D;  4YTM D;  3VRB D;  3VR8 D;  3AE3 D; 
#chains in the Genus database with same CATH homology
 5C2T D;  3CIR C;  4YSY D;  1ZP0 D;  3AEA D;  3AE7 D;  5C3J D;  1QLB C;  2H88 D;  3P4S C;  3AEC C;  1KFY D;  3AE1 C;  3AED C;  2FBW D;  3VR9 C;  4YSZ C;  3AE2 C;  2BS3 C;  2ACZ D;  3CIR D;  3AEB C;  2WDR C;  3AEE C;  1L0V C;  1KF6 D;  4YSX C;  3P4S D;  3AEC D;  2WU2 D;  3AEG C;  3VR9 D;  4YSZ D;  1E7P C;  2BS4 C;  3AEF D;  2H89 C;  2WP9 C;  3AE2 D;  2WDV C;  3SFD D;  3AEB D;  2WDR D;  2WQY D;  3AE5 C;  3P4P D;  1L0V D;  4YXD C;  2WU5 C;  3AE6 C;  4YSX D;  3SFE C;  1NEN C;  2H89 D;  3AE4 C;  4YT0 C;  3P4Q C;  3AE5 D;  3P4R C;  3ABV C;  3AE1 D;  3AED D;  2BS2 C;  1YQ3 C;  2WU5 D;  4YTP C;  4YXD D;  3VRB C;  3AE6 D;  5C2T C;  3VRA C;  3SFE D;  3AE8 C;  1ZOY C;  1ZP0 C;  3AEE D;  1NEN D;  3AEA C;  3AE4 D;  4YT0 D;  2B76 C;  3P4Q D;  1YQ4 C;  2H88 C;  3AE9 C;  3P4R D;  3ABV D;  3AEG D;  1YQ3 D;  1NEK C;  2WS3 C;  2WDQ C;  2WP9 D;  3VRA D;  2WDV D;  3AE8 D;  1ZOY D;  4KX6 C;  4YTN C;  1KF6 C;  4YTM C;  2B76 D;  1YQ4 D;  3VR8 C;  3AE3 C;  3AE9 D;  2WU2 C;  4YSY C;  1NEK D;  2WS3 D;  3AEF C;  2WDQ D;  2ACZ C;  3AE7 C;  3SFD C;  4KX6 D;  2WQY C;  5C3J C;  3P4P C;  1KFY C;  2FBW C;  4YTN D;  4YTP D;  4YTM D;  3VRB D;  3VR8 D;  3AE3 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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