3AG1I

Bovine heart cytochrome c oxidase in the carbon monoxide-bound fully reduced state at 280 k
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
72
structure length
72
Chain Sequence
TALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQSAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Bovine cytochrome c oxidase structures enable O2 reduction with minimization of reactive oxygens and provide a proton-pumping gate
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords Cytochrome c oxidase subunit 1
total genus 23
structure length 72
sequence length 72
chains with identical sequence V
ec nomenclature
pdb deposition date 2010-03-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF02937 COX6C Cytochrome c oxidase subunit VIc
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.93.10 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain I Mitochondrial cytochrome c oxidase subunit VIc/VIIs 3ag1I00
1V55I 3AG2I 3ABKI 1OCZI 3ASOI 3AG1I 2EILI 5B3SI 5IY5I 3AG3I 2Y69I 2EIKI 1OCCI 3X2QI 1OCOI 3AG4I 1OCRI 2ZXWI 5B1BI 2EIJI 3WG7I 3ASNI 5B1AI 3ABMI 2EINI 2DYRI 2DYSI 3ABLI 1V54I 2EIMI 2OCCI
chains in the Genus database with same CATH superfamily
1V55I 3AG2I 3ABKI 1OCZI 3ASOI 3AG1I 2EILI 5B3SI 5IY5I 3AG3I 2Y69I 2EIKI 1OCCI 3X2QI 1OCOI 3AG4I 1OCRI 2ZXWI 5B1BI 2EIJI 3WG7I 3ASNI 5B1AI 3ABMI 2EINI 2DYRI 2DYSI 3ABLI 1V54I 2EIMI 2OCCI
chains in the Genus database with same CATH topology
1V55I 3AG2I 3ABKI 1OCZI 3ASOI 3AG1I 2EILI 5B3SI 5IY5I 3AG3I 2Y69I 2EIKI 1OCCI 3X2QI 1OCOI 3AG4I 1OCRI 2ZXWI 5B1BI 2EIJI 3WG7I 3ASNI 5B1AI 3ABMI 2EINI 2DYRI 2DYSI 3ABLI 1V54I 2EIMI 2OCCI
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1V55 I;  3AG2 I;  3ABK I;  1OCZ I;  3ASO I;  3AG1 I;  2EIL I;  5B3S I;  5IY5 I;  3AG3 I;  2Y69 I;  2EIK I;  1OCC I;  3X2Q I;  1OCO I;  3AG4 I;  1OCR I;  2ZXW I;  5B1B I;  2EIJ I;  3WG7 I;  3ASN I;  5B1A I;  3ABM I;  2EIN I;  2DYR I;  2DYS I;  3ABL I;  1V54 I;  2EIM I;  2OCC I; 
#chains in the Genus database with same CATH topology
 1V55 I;  3AG2 I;  3ABK I;  1OCZ I;  3ASO I;  3AG1 I;  2EIL I;  5B3S I;  5IY5 I;  3AG3 I;  2Y69 I;  2EIK I;  1OCC I;  3X2Q I;  1OCO I;  3AG4 I;  1OCR I;  2ZXW I;  5B1B I;  2EIJ I;  3WG7 I;  3ASN I;  5B1A I;  3ABM I;  2EIN I;  2DYR I;  2DYS I;  3ABL I;  1V54 I;  2EIM I;  2OCC I; 
#chains in the Genus database with same CATH homology
 1V55 I;  3AG2 I;  3ABK I;  1OCZ I;  3ASO I;  3AG1 I;  2EIL I;  5B3S I;  5IY5 I;  3AG3 I;  2Y69 I;  2EIK I;  1OCC I;  3X2Q I;  1OCO I;  3AG4 I;  1OCR I;  2ZXW I;  5B1B I;  2EIJ I;  3WG7 I;  3ASN I;  5B1A I;  3ABM I;  2EIN I;  2DYR I;  2DYS I;  3ABL I;  1V54 I;  2EIM I;  2OCC I; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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