3AG4A

Bovine heart cytochrome c oxidase in the cyanide ion-bound fully reduced state at 100 k
Total Genus 208
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
208
sequence length
513
structure length
513
Chain Sequence
FINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Cytochrome c oxidase subunit 1
publication title Bovine cytochrome c oxidase structures enable O2 reduction with minimization of reactive oxygens and provide a proton-pumping gate
pubmed doi rcsb
total genus 208
structure length 513
sequence length 513
chains with identical sequence N
ec nomenclature ec 1.9.3.1: Cytochrome-c oxidase.
pdb deposition date 2010-03-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00115 COX1 Cytochrome C and Quinol oxidase polypeptide I
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.210.10 Mainly Alpha Up-down Bundle Cytochrome C Oxidase; Chain A Cytochrome c oxidase-like, subunit I domain 3ag4A00
1OCOA 3EHBA 5IY5A 3WFBB 3FYIA 3WFDB 2YEVA 4GP5A 3OMIA 3AG1A 1OCCA 3QJQA 1V54A 2EIKA 5B1BA 3QJUA 3X2QA 1AR1A 3EH5A 3ASNA 2EILA 2QPDA 3O0RB 3ABMA 4N4YA 3BVDA 3QJRA 1M56A 3OMNA 2EIJA 3MK7A 1EHKA 4G72A 2DYSA 3AG2A 3ASOA 1FFTA 2ZXWA 3AYFA 4G70A 1XMEA 3EH4A 3S8FA 4G7QA 3S3DA 1OCZA 3QJVA 3S3CA 5B3SA 3ABLA 5B1AA 2EIMA 3EH3A 1OCRA 4GP4A 3AYGA 3WFEB 3S8GA 4G7SA 5DJQA 3DTUA 2EINA 4XYDA 3QJSA 2QPEA 3ABKA 3WFCB 3OM3A 2Y69A 4G71A 3QJTA 3AG4A 1V55A 2GSMA 4GP8A 3S3BA 1M57A 4FAAA 3WG7A 3FYEA 3AG3A 1QLEA 3OMAA 4G7RA 4FA7A 2OCCA 2DYRA 3HB3A
chains in the Genus database with same CATH superfamily
1OCOA 3EHBA 5IY5A 3WFBB 3FYIA 3WFDB 2YEVA 4GP5A 3OMIA 3AG1A 1OCCA 3QJQA 1V54A 2EIKA 5B1BA 3QJUA 3X2QA 1AR1A 3EH5A 3ASNA 2EILA 2QPDA 3O0RB 3ABMA 4N4YA 3BVDA 3QJRA 1M56A 3OMNA 2EIJA 3MK7A 1EHKA 4G72A 2DYSA 3AG2A 3ASOA 1FFTA 2ZXWA 3AYFA 4G70A 1XMEA 3EH4A 3S8FA 4G7QA 3S3DA 1OCZA 3QJVA 3S3CA 5B3SA 3ABLA 5B1AA 2EIMA 3EH3A 1OCRA 4GP4A 3AYGA 3WFEB 3S8GA 4G7SA 5DJQA 3DTUA 2EINA 4XYDA 3QJSA 2QPEA 3ABKA 3WFCB 3OM3A 2Y69A 4G71A 3QJTA 3AG4A 1V55A 2GSMA 4GP8A 3S3BA 1M57A 4FAAA 3WG7A 3FYEA 3AG3A 1QLEA 3OMAA 4G7RA 4FA7A 2OCCA 2DYRA 3HB3A
chains in the Genus database with same CATH topology
1OCOA 3EHBA 5IY5A 3WFBB 3FYIA 3WFDB 2YEVA 4GP5A 3OMIA 3AG1A 1OCCA 3QJQA 1V54A 2EIKA 5B1BA 3QJUA 3X2QA 1AR1A 3EH5A 3ASNA 2EILA 2QPDA 3O0RB 3ABMA 4N4YA 3BVDA 3QJRA 1M56A 3OMNA 2EIJA 3MK7A 1EHKA 4G72A 2DYSA 3AG2A 3ASOA 1FFTA 2ZXWA 3AYFA 4G70A 1XMEA 3EH4A 3S8FA 4G7QA 3S3DA 1OCZA 3QJVA 3S3CA 5B3SA 3ABLA 5B1AA 2EIMA 3EH3A 1OCRA 4GP4A 3AYGA 3WFEB 3S8GA 4G7SA 5DJQA 3DTUA 2EINA 4XYDA 3QJSA 2QPEA 3ABKA 3WFCB 3OM3A 2Y69A 4G71A 3QJTA 3AG4A 1V55A 2GSMA 4GP8A 3S3BA 1M57A 4FAAA 3WG7A 3FYEA 3AG3A 1QLEA 3OMAA 4G7RA 4FA7A 2OCCA 2DYRA 3HB3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OCO A;  3EHB A;  5IY5 A;  3WFB B;  3FYI A;  3WFD B;  2YEV A;  4GP5 A;  3OMI A;  3AG1 A;  1OCC A;  3QJQ A;  1V54 A;  2EIK A;  5B1B A;  3QJU A;  3X2Q A;  1AR1 A;  3EH5 A;  3ASN A;  2EIL A;  2QPD A;  3O0R B;  3ABM A;  4N4Y A;  3BVD A;  3QJR A;  1M56 A;  3OMN A;  2EIJ A;  3MK7 A;  1EHK A;  4G72 A;  2DYS A;  3AG2 A;  3ASO A;  1FFT A;  2ZXW A;  3AYF A;  4G70 A;  1XME A;  3EH4 A;  3S8F A;  4G7Q A;  3S3D A;  1OCZ A;  3QJV A;  3S3C A;  5B3S A;  3ABL A;  5B1A A;  2EIM A;  3EH3 A;  1OCR A;  4GP4 A;  3AYG A;  3WFE B;  3S8G A;  4G7S A;  5DJQ A;  3DTU A;  2EIN A;  4XYD A;  3QJS A;  2QPE A;  3ABK A;  3WFC B;  3OM3 A;  2Y69 A;  4G71 A;  3QJT A;  3AG4 A;  1V55 A;  2GSM A;  4GP8 A;  3S3B A;  1M57 A;  4FAA A;  3WG7 A;  3FYE A;  3AG3 A;  1QLE A;  3OMA A;  4G7R A;  4FA7 A;  2OCC A;  2DYR A;  3HB3 A; 
#chains in the Genus database with same CATH topology
 1OCO A;  3EHB A;  5IY5 A;  3WFB B;  3FYI A;  3WFD B;  2YEV A;  4GP5 A;  3OMI A;  3AG1 A;  1OCC A;  3QJQ A;  1V54 A;  2EIK A;  5B1B A;  3QJU A;  3X2Q A;  1AR1 A;  3EH5 A;  3ASN A;  2EIL A;  2QPD A;  3O0R B;  3ABM A;  4N4Y A;  3BVD A;  3QJR A;  1M56 A;  3OMN A;  2EIJ A;  3MK7 A;  1EHK A;  4G72 A;  2DYS A;  3AG2 A;  3ASO A;  1FFT A;  2ZXW A;  3AYF A;  4G70 A;  1XME A;  3EH4 A;  3S8F A;  4G7Q A;  3S3D A;  1OCZ A;  3QJV A;  3S3C A;  5B3S A;  3ABL A;  5B1A A;  2EIM A;  3EH3 A;  1OCR A;  4GP4 A;  3AYG A;  3WFE B;  3S8G A;  4G7S A;  5DJQ A;  3DTU A;  2EIN A;  4XYD A;  3QJS A;  2QPE A;  3ABK A;  3WFC B;  3OM3 A;  2Y69 A;  4G71 A;  3QJT A;  3AG4 A;  1V55 A;  2GSM A;  4GP8 A;  3S3B A;  1M57 A;  4FAA A;  3WG7 A;  3FYE A;  3AG3 A;  1QLE A;  3OMA A;  4G7R A;  4FA7 A;  2OCC A;  2DYR A;  3HB3 A; 
#chains in the Genus database with same CATH homology
 1OCO A;  3EHB A;  5IY5 A;  3WFB B;  3FYI A;  3WFD B;  2YEV A;  4GP5 A;  3OMI A;  3AG1 A;  1OCC A;  3QJQ A;  1V54 A;  2EIK A;  5B1B A;  3QJU A;  3X2Q A;  1AR1 A;  3EH5 A;  3ASN A;  2EIL A;  2QPD A;  3O0R B;  3ABM A;  4N4Y A;  3BVD A;  3QJR A;  1M56 A;  3OMN A;  2EIJ A;  3MK7 A;  1EHK A;  4G72 A;  2DYS A;  3AG2 A;  3ASO A;  1FFT A;  2ZXW A;  3AYF A;  4G70 A;  1XME A;  3EH4 A;  3S8F A;  4G7Q A;  3S3D A;  1OCZ A;  3QJV A;  3S3C A;  5B3S A;  3ABL A;  5B1A A;  2EIM A;  3EH3 A;  1OCR A;  4GP4 A;  3AYG A;  3WFE B;  3S8G A;  4G7S A;  5DJQ A;  3DTU A;  2EIN A;  4XYD A;  3QJS A;  2QPE A;  3ABK A;  3WFC B;  3OM3 A;  2Y69 A;  4G71 A;  3QJT A;  3AG4 A;  1V55 A;  2GSM A;  4GP8 A;  3S3B A;  1M57 A;  4FAA A;  3WG7 A;  3FYE A;  3AG3 A;  1QLE A;  3OMA A;  4G7R A;  4FA7 A;  2OCC A;  2DYR A;  3HB3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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