3AGZA

Crystal structure of human hsp40 hdj1 peptide-binding domain complexed with a c-terminal peptide of hsp70
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
185
structure length
185
Chain Sequence
ARKKQDPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVLPI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Peptide-binding sites as revealed by the crystal structures of the human Hsp40 Hdj1 C-terminal domain in complex with the octapeptide from human Hsp70
pubmed doi rcsb
molecule tags Chaperone
source organism Homo sapiens
molecule keywords DnaJ homolog subfamily B member 1
total genus 39
structure length 185
sequence length 185
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-04-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01556 DnaJ_C DnaJ C terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.260.20 Mainly Beta Sandwich HSP40/DNAj peptide-binding domain Urease metallochaperone UreE, N-terminal domain 3agzA01
2.60.260.20 Mainly Beta Sandwich HSP40/DNAj peptide-binding domain Urease metallochaperone UreE, N-terminal domain 3agzA02
1NLTA 1GMWA 3TJ8A 3AGZA 3I38A 1GMUA 1EB0A 3LA0A 3NXZA 3TJAA 1EARA 2B26A 2Q2GA 4J80A 1C3GA 1XAOA 3AGXA 3L9ZA 2QLDA 3AGYA 1GMVA 3TJ9A 1GMWD 3NY0A 3LZ8A 4L3KA
chains in the Genus database with same CATH superfamily
2ODXA 1NLTA 1GMWA 3TJ8A 3AGZA 3I38A 2JZ8A 3C5XC 3AKOB 1GMUA 1EB0A 3LA0A 3NXZA 3TJAA 2JVMA 1EARA 2B26A 2Q2GA 4J80A 1C3GA 1XAOA 3AGXA 3L9ZA 2QLDA 3AGYA 3C6EC 1GMVA 3TJ9A 1GMWD 3NY0A 2JRRA 3LZ8A 4L3KA
chains in the Genus database with same CATH topology
1NLTA 1GMWA 3TJ8A 3AGZA 3I38A 1GMUA 1EB0A 3LA0A 3NXZA 3TJAA 1EARA 2B26A 2Q2GA 4J80A 1C3GA 1XAOA 3AGXA 3L9ZA 2QLDA 3AGYA 1GMVA 3TJ9A 1GMWD 3NY0A 3LZ8A 4L3KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NLT A;  1GMW A;  3TJ8 A;  3AGZ A;  3I38 A;  1GMU A;  1EB0 A;  3LA0 A;  3NXZ A;  3TJA A;  1EAR A;  2B26 A;  2Q2G A;  4J80 A;  1C3G A;  1XAO A;  3AGX A;  3L9Z A;  2QLD A;  3AGY A;  1GMV A;  3TJ9 A;  1GMW D;  3NY0 A;  3LZ8 A;  4L3K A; 
#chains in the Genus database with same CATH topology
 2ODX A;  1NLT A;  1GMW A;  3TJ8 A;  3AGZ A;  3I38 A;  2JZ8 A;  3C5X C;  3AKO B;  1GMU A;  1EB0 A;  3LA0 A;  3NXZ A;  3TJA A;  2JVM A;  1EAR A;  2B26 A;  2Q2G A;  4J80 A;  1C3G A;  1XAO A;  3AGX A;  3L9Z A;  2QLD A;  3AGY A;  3C6E C;  1GMV A;  3TJ9 A;  1GMW D;  3NY0 A;  2JRR A;  3LZ8 A;  4L3K A; 
#chains in the Genus database with same CATH homology
 1NLT A;  1GMW A;  3TJ8 A;  3AGZ A;  3I38 A;  1GMU A;  1EB0 A;  3LA0 A;  3NXZ A;  3TJA A;  1EAR A;  2B26 A;  2Q2G A;  4J80 A;  1C3G A;  1XAO A;  3AGX A;  3L9Z A;  2QLD A;  3AGY A;  1GMV A;  3TJ9 A;  1GMW D;  3NY0 A;  3LZ8 A;  4L3K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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