3AKOB

Crystal structure of the reassembled venus
Total Genus 4
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
80
structure length
80
Chain Sequence
DKQKNGIKANFKIRHNIEDGGVQLADHYQQNTPIGDGPVLLPDNHYLSYQSALSKDPNEKRDHMVLLEFVTAAGITLGMD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure and characteristics of reassembled fluorescent protein, a new insight into the reassembly mechanisms
pubmed doi rcsb
molecule tags Fluorescent protein
source organism Plant transformation vector psiteii-4c1
molecule keywords Venus
total genus 4
structure length 80
sequence length 80
chains with identical sequence D, F, H
ec nomenclature
pdb deposition date 2010-07-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.260.60 Mainly Beta Sandwich HSP40/DNAj peptide-binding domain HSP40/DNAj peptide-binding domain 3akoB00
3AKOB
chains in the Genus database with same CATH superfamily
1XAOA 3LZ8A 3AGZA 1GMUA 1EB0A 2Q2GA 3L9ZA 4L3KA 1EARA 3AGYA 3TJ8A 2B26A 3TJAA 1C3GA 4J80A 3AGXA 2JRRA 1NLTA 2QLDA 2ODXA 3C6EC 3AKOB 3LA0A 2JVMA 3TJ9A 1GMVA 1GMWD 3I38A 3NY0A 1GMWA 3NXZA 3C5XC 2JZ8A
chains in the Genus database with same CATH topology
3C6EC 3AKOB 3C5XC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AKO B; 
#chains in the Genus database with same CATH topology
 1XAO A;  3LZ8 A;  3AGZ A;  1GMU A;  1EB0 A;  2Q2G A;  3L9Z A;  4L3K A;  1EAR A;  3AGY A;  3TJ8 A;  2B26 A;  3TJA A;  1C3G A;  4J80 A;  3AGX A;  2JRR A;  1NLT A;  2QLD A;  2ODX A;  3C6E C;  3AKO B;  3LA0 A;  2JVM A;  3TJ9 A;  1GMV A;  1GMW D;  3I38 A;  3NY0 A;  1GMW A;  3NXZ A;  3C5X C;  2JZ8 A; 
#chains in the Genus database with same CATH homology
 3C6E C;  3AKO B;  3C5X C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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