3AMFA

E13r mutant of fmn-binding protein from desulfovibrio vulgaris (miyazaki f)
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
122
structure length
122
Chain Sequence
MLPGTFFEVLKNRGVVAIATQGEDGPHLVNTWNSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRKVAGRNGPGTGFLIRGSAAFRTDGPEFEAIARFKWARAALVITVVSAEQTL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords FMN-binding protein
publication title Crystal structure of E13R mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
rcsb
source organism Desulfovibrio vulgaris
total genus 24
structure length 122
sequence length 122
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-08-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 3amfA00
3DB0A 2RDEA 4HMUA 1FLMA 4QVBA 2I02A 4HMWA 5BNCA 3PFTA 3VY2A 1YLNA 3A6RA 3ZOCA 1W3RA 3ZODA 3U0IA 3K86A 3E4VA 2AQ6A 5CHOA 1G79A 3KYFA 1XXOA 3ZOGA 1WGBA 1W3QA 3BA3A 3R5PA 2Q9KA 5ESCA 2FURA 3A20A 3CP3A 3AWHA 3TGVA 5JABA 4Z85A 2E83A 4R82A 1JNWA 2RE7A 4XJ2A 2IABA 3A6QA 3K87A 1TY9A 1G78A 3H96A 4HMSA 3BNKA 3R5WA 1I0SA 3FKHA 3HY8A 2ED4A 4F07A 2HQ9A 3GASA 2D36A 2VPAA 3FGEA 3ZOEA 1Y30A 3KYGA 2D37A 1RFEA 3U5WA 2QCKA 2X1JA 1WV4A 1T9MA 3AMFA 4ZKYA 1RZ1A 3EC6A 3ZOFA 3VYAA 2HQ7A 3U34A 4IRAA 3R5LA 4HMVA 1WLKA 2ECRA 1USFA 3R5ZA 3NFWA 2ASFA 2R0XA 3ZOHA 2OL5A 2FG9A 2OU5A 1G77A 4HMXA 2HTIA 1W3PA 1I0RA 2IG6A 1WLIA 2NR4A 2IMLA 2HHZA 1VL7A 2FHQA 1EJEA 3K88A 3B5MA 1DNLA 1YOAA 2PTFA 1CI0A 2QEAA 4YWNA 3SWJA 3BPKA 3DNHA 1W9AA 4YBNA 4L82A 5CHEC 1XHNA 4HX6A 1NRGA 2GJGA 3R5YA 1G76A 1W3OA 2A2JA 3IN6A 2ECUA 3U35A 2ARZA 2I51A 2D38A 3DMBA 1RZ0A 2X1KA 3CB0A 3VY5A 3F7EA 3HMZA 1USCA 2D5MA 4HMTA 3RH7A 1AXJA 4N7RC 4Y9IA 2HTDA 4XHYA 2R6VA 3R5RA
chains in the Genus database with same CATH superfamily
3DB0A 2RDEA 4HMUA 1FLMA 4QVBA 2I02A 4HMWA 5BNCA 3PFTA 3VY2A 1YLNA 3A6RA 3ZOCA 1W3RA 3ZODA 3U0IA 3K86A 3E4VA 2AQ6A 5CHOA 1G79A 3KYFA 1XXOA 3ZOGA 1WGBA 1W3QA 3BA3A 3R5PA 2Q9KA 3HE1A 5ESCA 2FURA 3A20A 4MTKA 3CP3A 3AWHA 3EAAA 3TGVA 5JABA 4Z85A 2E83A 4R82A 1JNWA 2RE7A 4XJ2A 4HKHA 2IABA 3A6QA 3K87A 1TY9A 1G78A 3H96A 4HMSA 3BNKA 3R5WA 1I0SA 3FKHA 3HY8A 2ED4A 4F07A 2HQ9A 3GASA 2D36A 4TV4A 2VPAA 3FGEA 3ZOEA 1Y30A 4W64A 3KYGA 2D37A 1RFEA 3U5WA 2QCKA 2X1JA 1WV4A 1T9MA 1Y12A 3AMFA 4ZKYA 1RZ1A 3EC6A 3ZOFA 3VYAA 2HQ7A 3U34A 4IRAA 3R5LA 4HMVA 1WLKA 2ECRA 1USFA 3R5ZA 3NFWA 2ASFA 2R0XA 3ZOHA 2OL5A 2FG9A 2OU5A 1G77A 4HMXA 2HTIA 1W3PA 1I0RA 2IG6A 1WLIA 2NR4A 2GUJA 2IMLA 2HHZA 1VL7A 2FHQA 1EJEA 3K88A 3B5MA 1DNLA 1YOAA 3V4HA 2PTFA 1CI0A 2QEAA 4YWNA 3SWJA 3BPKA 3DNHA 1W9AA 4YBNA 4L82A 5CHEC 1XHNA 4HX6A 1NRGA 2GJGA 3R5YA 1G76A 1W3OA 2A2JA 3IN6A 2K4QA 2L1TA 2ECUA 3U35A 2ARZA 2I51A 2D38A 2P5ZX 1RZ0A 2X1KA 3CB0A 3DMBA 3VY5A 3F7EA 3HMZA 1USCA 2D5MA 4HMTA 3RH7A 1AXJA 4N7RC 4Y9IA 2HTDA 4UHVA 4XHYA 2R6VA 3R5RA
chains in the Genus database with same CATH topology
3DB0A 2RDEA 4HMUA 1FLMA 4QVBA 2I02A 4HMWA 5BNCA 3PFTA 3VY2A 1YLNA 3A6RA 3ZOCA 1W3RA 3ZODA 3U0IA 3K86A 3E4VA 2AQ6A 5CHOA 1G79A 3KYFA 1XXOA 3ZOGA 1WGBA 1W3QA 3BA3A 3R5PA 2Q9KA 5ESCA 2FURA 3A20A 3CP3A 3AWHA 3TGVA 5JABA 4Z85A 2E83A 4R82A 1JNWA 2RE7A 4XJ2A 2IABA 3A6QA 3K87A 1TY9A 1G78A 3H96A 4HMSA 3BNKA 3R5WA 1I0SA 3FKHA 3HY8A 2ED4A 4F07A 2HQ9A 3GASA 2D36A 2VPAA 3FGEA 3ZOEA 1Y30A 3KYGA 2D37A 1RFEA 3U5WA 2QCKA 2X1JA 1WV4A 1T9MA 3AMFA 4ZKYA 1RZ1A 3EC6A 3ZOFA 3VYAA 2HQ7A 3U34A 4IRAA 3R5LA 4HMVA 1WLKA 2ECRA 1USFA 3R5ZA 3NFWA 2ASFA 2R0XA 3ZOHA 2OL5A 2FG9A 2OU5A 1G77A 4HMXA 2HTIA 1W3PA 1I0RA 2IG6A 1WLIA 2NR4A 2IMLA 2HHZA 1VL7A 2FHQA 1EJEA 3K88A 3B5MA 1DNLA 1YOAA 2PTFA 1CI0A 2QEAA 4YWNA 3SWJA 3BPKA 3DNHA 1W9AA 4YBNA 4L82A 5CHEC 1XHNA 4HX6A 1NRGA 2GJGA 3R5YA 1G76A 1W3OA 2A2JA 3IN6A 2ECUA 3U35A 2ARZA 2I51A 2D38A 3DMBA 1RZ0A 2X1KA 3CB0A 3VY5A 3F7EA 3HMZA 1USCA 2D5MA 4HMTA 3RH7A 1AXJA 4N7RC 4Y9IA 2HTDA 4XHYA 2R6VA 3R5RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DB0 A;  2RDE A;  4HMU A;  1FLM A;  4QVB A;  2I02 A;  4HMW A;  5BNC A;  3PFT A;  3VY2 A;  1YLN A;  3A6R A;  3ZOC A;  1W3R A;  3ZOD A;  3U0I A;  3K86 A;  3E4V A;  2AQ6 A;  5CHO A;  1G79 A;  3KYF A;  1XXO A;  3ZOG A;  1WGB A;  1W3Q A;  3BA3 A;  3R5P A;  2Q9K A;  5ESC A;  2FUR A;  3A20 A;  3CP3 A;  3AWH A;  3TGV A;  5JAB A;  4Z85 A;  2E83 A;  4R82 A;  1JNW A;  2RE7 A;  4XJ2 A;  2IAB A;  3A6Q A;  3K87 A;  1TY9 A;  1G78 A;  3H96 A;  4HMS A;  3BNK A;  3R5W A;  1I0S A;  3FKH A;  3HY8 A;  2ED4 A;  4F07 A;  2HQ9 A;  3GAS A;  2D36 A;  2VPA A;  3FGE A;  3ZOE A;  1Y30 A;  3KYG A;  2D37 A;  1RFE A;  3U5W A;  2QCK A;  2X1J A;  1WV4 A;  1T9M A;  3AMF A;  4ZKY A;  1RZ1 A;  3EC6 A;  3ZOF A;  3VYA A;  2HQ7 A;  3U34 A;  4IRA A;  3R5L A;  4HMV A;  1WLK A;  2ECR A;  1USF A;  3R5Z A;  3NFW A;  2ASF A;  2R0X A;  3ZOH A;  2OL5 A;  2FG9 A;  2OU5 A;  1G77 A;  4HMX A;  2HTI A;  1W3P A;  1I0R A;  2IG6 A;  1WLI A;  2NR4 A;  2IML A;  2HHZ A;  1VL7 A;  2FHQ A;  1EJE A;  3K88 A;  3B5M A;  1DNL A;  1YOA A;  2PTF A;  1CI0 A;  2QEA A;  4YWN A;  3SWJ A;  3BPK A;  3DNH A;  1W9A A;  4YBN A;  4L82 A;  5CHE C;  1XHN A;  4HX6 A;  1NRG A;  2GJG A;  3R5Y A;  1G76 A;  1W3O A;  2A2J A;  3IN6 A;  2ECU A;  3U35 A;  2ARZ A;  2I51 A;  2D38 A;  3DMB A;  1RZ0 A;  2X1K A;  3CB0 A;  3VY5 A;  3F7E A;  3HMZ A;  1USC A;  2D5M A;  4HMT A;  3RH7 A;  1AXJ A;  4N7R C;  4Y9I A;  2HTD A;  4XHY A;  2R6V A;  3R5R A; 
#chains in the Genus database with same CATH topology
 3DB0 A;  2RDE A;  4HMU A;  1FLM A;  4QVB A;  2I02 A;  4HMW A;  5BNC A;  3PFT A;  3VY2 A;  1YLN A;  3A6R A;  3ZOC A;  1W3R A;  3ZOD A;  3U0I A;  3K86 A;  3E4V A;  2AQ6 A;  5CHO A;  1G79 A;  3KYF A;  1XXO A;  3ZOG A;  1WGB A;  1W3Q A;  3BA3 A;  3R5P A;  2Q9K A;  3HE1 A;  5ESC A;  2FUR A;  3A20 A;  4MTK A;  3CP3 A;  3AWH A;  3EAA A;  3TGV A;  5JAB A;  4Z85 A;  2E83 A;  4R82 A;  1JNW A;  2RE7 A;  4XJ2 A;  4HKH A;  2IAB A;  3A6Q A;  3K87 A;  1TY9 A;  1G78 A;  3H96 A;  4HMS A;  3BNK A;  3R5W A;  1I0S A;  3FKH A;  3HY8 A;  2ED4 A;  4F07 A;  2HQ9 A;  3GAS A;  2D36 A;  4TV4 A;  2VPA A;  3FGE A;  3ZOE A;  1Y30 A;  4W64 A;  3KYG A;  2D37 A;  1RFE A;  3U5W A;  2QCK A;  2X1J A;  1WV4 A;  1T9M A;  1Y12 A;  3AMF A;  4ZKY A;  1RZ1 A;  3EC6 A;  3ZOF A;  3VYA A;  2HQ7 A;  3U34 A;  4IRA A;  3R5L A;  4HMV A;  1WLK A;  2ECR A;  1USF A;  3R5Z A;  3NFW A;  2ASF A;  2R0X A;  3ZOH A;  2OL5 A;  2FG9 A;  2OU5 A;  1G77 A;  4HMX A;  2HTI A;  1W3P A;  1I0R A;  2IG6 A;  1WLI A;  2NR4 A;  2GUJ A;  2IML A;  2HHZ A;  1VL7 A;  2FHQ A;  1EJE A;  3K88 A;  3B5M A;  1DNL A;  1YOA A;  3V4H A;  2PTF A;  1CI0 A;  2QEA A;  4YWN A;  3SWJ A;  3BPK A;  3DNH A;  1W9A A;  4YBN A;  4L82 A;  5CHE C;  1XHN A;  4HX6 A;  1NRG A;  2GJG A;  3R5Y A;  1G76 A;  1W3O A;  2A2J A;  3IN6 A;  2K4Q A;  2L1T A;  2ECU A;  3U35 A;  2ARZ A;  2I51 A;  2D38 A;  2P5Z X;  1RZ0 A;  2X1K A;  3CB0 A;  3DMB A;  3VY5 A;  3F7E A;  3HMZ A;  1USC A;  2D5M A;  4HMT A;  3RH7 A;  1AXJ A;  4N7R C;  4Y9I A;  2HTD A;  4UHV A;  4XHY A;  2R6V A;  3R5R A; 
#chains in the Genus database with same CATH homology
 3DB0 A;  2RDE A;  4HMU A;  1FLM A;  4QVB A;  2I02 A;  4HMW A;  5BNC A;  3PFT A;  3VY2 A;  1YLN A;  3A6R A;  3ZOC A;  1W3R A;  3ZOD A;  3U0I A;  3K86 A;  3E4V A;  2AQ6 A;  5CHO A;  1G79 A;  3KYF A;  1XXO A;  3ZOG A;  1WGB A;  1W3Q A;  3BA3 A;  3R5P A;  2Q9K A;  5ESC A;  2FUR A;  3A20 A;  3CP3 A;  3AWH A;  3TGV A;  5JAB A;  4Z85 A;  2E83 A;  4R82 A;  1JNW A;  2RE7 A;  4XJ2 A;  2IAB A;  3A6Q A;  3K87 A;  1TY9 A;  1G78 A;  3H96 A;  4HMS A;  3BNK A;  3R5W A;  1I0S A;  3FKH A;  3HY8 A;  2ED4 A;  4F07 A;  2HQ9 A;  3GAS A;  2D36 A;  2VPA A;  3FGE A;  3ZOE A;  1Y30 A;  3KYG A;  2D37 A;  1RFE A;  3U5W A;  2QCK A;  2X1J A;  1WV4 A;  1T9M A;  3AMF A;  4ZKY A;  1RZ1 A;  3EC6 A;  3ZOF A;  3VYA A;  2HQ7 A;  3U34 A;  4IRA A;  3R5L A;  4HMV A;  1WLK A;  2ECR A;  1USF A;  3R5Z A;  3NFW A;  2ASF A;  2R0X A;  3ZOH A;  2OL5 A;  2FG9 A;  2OU5 A;  1G77 A;  4HMX A;  2HTI A;  1W3P A;  1I0R A;  2IG6 A;  1WLI A;  2NR4 A;  2IML A;  2HHZ A;  1VL7 A;  2FHQ A;  1EJE A;  3K88 A;  3B5M A;  1DNL A;  1YOA A;  2PTF A;  1CI0 A;  2QEA A;  4YWN A;  3SWJ A;  3BPK A;  3DNH A;  1W9A A;  4YBN A;  4L82 A;  5CHE C;  1XHN A;  4HX6 A;  1NRG A;  2GJG A;  3R5Y A;  1G76 A;  1W3O A;  2A2J A;  3IN6 A;  2ECU A;  3U35 A;  2ARZ A;  2I51 A;  2D38 A;  3DMB A;  1RZ0 A;  2X1K A;  3CB0 A;  3VY5 A;  3F7E A;  3HMZ A;  1USC A;  2D5M A;  4HMT A;  3RH7 A;  1AXJ A;  4N7R C;  4Y9I A;  2HTD A;  4XHY A;  2R6V A;  3R5R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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