3AUJG

Structure of diol dehydratase complexed with glycerol
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
139
structure length
139
Chain Sequence
SRSARVSDYPLANKHPEWVKTATNKTLDDFTLENVLSNKVTAQDMRITPETLRLQASIAKDAGRDRLAMNFERAAELTAVPDDRILEIYNALRPYRSTKEELLAIADDLESRYQAKICAAFVREAATLYVERKKLKGDD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Redesign of coenzyme B(12) dependent diol dehydratase to be resistant to the mechanism-based inactivation by glycerol and act on longer chain 1,2-diols
pubmed doi rcsb
source organism Klebsiella oxytoca
molecule tags Lyase
molecule keywords Diol dehydrase alpha subunit
total genus 54
structure length 139
sequence length 139
chains with identical sequence M
ec nomenclature ec 4.2.1.28: Propanediol dehydratase.
pdb deposition date 2011-02-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF02287 Dehydratase_SU Dehydratase small subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1510.20 Mainly Alpha Orthogonal Bundle Hypothetical Protein Yqey; Chain: A; domain1 Hypothetical Protein Yqey; Chain: A; domain1 3aujG02
1DIOG 1EGMG 1UC4G 1UC5G 1EEXG 3AUJG 1IWBG 1MMFG 1IWPG 1EGVG
chains in the Genus database with same CATH superfamily
1DIOG 1EGMG 1NG6A 1UC4G 1UC5G 1EEXG 3AUJG 1IWBG 1MMFG 1IWPG 1Z2ZA 1EGVG
chains in the Genus database with same CATH topology
1DIOG 1EGMG 1NG6A 1UC4G 1UC5G 1EEXG 3AUJG 1IWBG 1MMFG 1IWPG 1Z2ZA 1EGVG
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DIO G;  1EGM G;  1UC4 G;  1UC5 G;  1EEX G;  3AUJ G;  1IWB G;  1MMF G;  1IWP G;  1EGV G; 
#chains in the Genus database with same CATH topology
 1DIO G;  1EGM G;  1NG6 A;  1UC4 G;  1UC5 G;  1EEX G;  3AUJ G;  1IWB G;  1MMF G;  1IWP G;  1Z2Z A;  1EGV G; 
#chains in the Genus database with same CATH homology
 1DIO G;  1EGM G;  1NG6 A;  1UC4 G;  1UC5 G;  1EEX G;  3AUJ G;  1IWB G;  1MMF G;  1IWP G;  1Z2Z A;  1EGV G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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