3AXZA

Crystal structure of haemophilus influenzae trmd in complex with adenosine
Total Genus 68
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
68
Knots found
sequence length
252
structure length
241
Chain Sequence
VPRGSHMWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVLADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQRKLLKEAQAEHNS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords tRNA (guanine-N(1)-)-methyltransferase
publication title Differentiating analogous tRNA methyltransferases by fragments of the methyl donor.
pubmed doi rcsb
source organism Haemophilus influenzae
total genus 68
structure length 241
sequence length 252
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.228: tRNA (guanine(37)-N(1))-methyltransferase.
pdb deposition date 2011-04-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01746 tRNA_m1G_MT tRNA (Guanine-1)-methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.20 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A tRNA(m1g37)methyltransferase, domain 2 3axzA02
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3axzA01
2CX8A 4RG1A 1NXZA 4YQ7A 3OIIA 4YQDA 4YQOA 1O6DA 3DCMX 1ZJRA 2O3AA 3BBDA 1P9PA 3OINA 2QMMA 2Z0YA 4X3LA 1UAMA 4YQIA 1J85A 4X3MA 4YQKA 4YPWA 4CNFA 4CNEA 4YVJA 4YQJA 4CNDA 3OIJA 4YVKA 4YQRA 4YQ1A 1VH0A 3BBEA 4YQ3A 3E5YA 2QWVA 3IEFA 4MCBA 4MCCA 3KY7A 2HA8A 4E8BA 1Z85A 1X7PA 4KGNA 4YQ0A 4YQ5A 5GM8A 4H3ZA 4YQQA 4IG6A 4MCDA 4YQTA 5GMBA 4YPYA 3KNUA 3L8UA 4YQAA 2EGVA 3N4JA 5GMCA 4YQBA 3O7BA 4YQLA 2EGWA 4YPXA 5D9FA 1VHYA 4YQSA 3GYQA 1TO0A 4JALA 3ONPA 3N4KA 4YVIA 1UALA 4YQCA 4H3YA 4YVGA 3AI9X 4YPZA 1MXIA 3ILKA 4YQNA 4YQPA 3KTYA 1OY5A 4YQGA 4YVHA 4L69A 5FAIA 1UAJA 3AXZA 1GZ0A 2YY8A 1UAKA 4YQ4A 1IPAA 4FAKA 3AIAA 1V2XA 4XBOA 2V3JA 4YQ6A 3NK6A 3KW2A 4YQ8A 3NK7A 5CO4A 4YQ2A 1VHKA 4J3CA 3BBHA 3IC6A 1X7OA 1NS5A 4JAKA 2I6DA 2V3KA 4CNGA 4YQ9A 1K3RA 4PZKA 1V6ZA 3QUVA 4KDZA
chains in the Genus database with same CATH superfamily
2CX8A 4RG1A 1NXZA 3SSXN 4YQ7A 3OIIA 4YQDA 4YQOA 1O6DA 3DCMX 1WRPR 1ZJRA 2O3AA 3BBDA 1P9PA 3OINA 2QMMA 2XDIA 2Z0YA 4X3LA 1UAMA 4YQIA 1J85A 4X3MA 4YQKA 4YPWA 4CNFA 4CNEA 4YVJA 4YQJA 4CNDA 3OIJA 1TROA 4YVKA 4YQRA 4YQ1A 1VH0A 3WRPA 3BBEA 4YQ3A 3E5YA 2QWVA 3IEFA 4MCBA 4MCCA 3KY7A 4JWGA 1WRTR 2HA8A 4E8BA 1Z85A 1X7PA 4KGNA 4YQ0A 4YQ5A 5GM8A 4H3ZA 4YQQA 4IG6A 4MCDA 4YQTA 4JWFA 5GMBA 4YPYA 4JWJA 3KNUA 3L8UA 1CO0A 4YQAA 2EGVA 3N4JA 5GMCA 3KORA 4YQBA 3O7BA 4YQLA 2EGWA 3G1CA 4YPXA 5D9FA 1VHYA 3GYQA 1TO0A 1V6ZA 4JALA 3ONPA 3N4KA 4YVIA 1MI7R 1UALA 4YQCA 4H3YA 4YVGA 3AI9X 1TRRA 4YPZA 3SSWN 1MXIA 3ILKA 4YQNA 4YQPA 3KTYA 1OY5A 4YQGA 4YVHA 4L69A 5FAIA 1UAJA 3AXZA 1GZ0A 2YY8A 1UAKA 4YQ4A 1IPAA 4FAKA 3AIAA 1V2XA 4XBOA 1ZT9A 2V3JA 4YQ6A 3NK6A 1JHGA 4JWHA 4FMWA 3KW2A 2OZ9R 4YQ8A 3NK7A 5CO4A 4YQ2A 3FRWA 1VHKA 4J3CA 3BBHA 3IC6A 1X7OA 1NS5A 4JAKA 2I6DA 1WRSR 2V3KA 1RCSA 4CNGA 4YQ9A 1K3RA 4PZKA 4YQSA 3QUVA 4KDZA
chains in the Genus database with same CATH topology
2CX8A 4RG1A 1NXZA 4YQ7A 3OIIA 4YQDA 4YQOA 1O6DA 3DCMX 1ZJRA 2O3AA 3BBDA 1P9PA 3OINA 2QMMA 2Z0YA 4X3LA 1UAMA 4YQIA 1J85A 4X3MA 4YQKA 4YPWA 4CNFA 4CNEA 4YVJA 4YQJA 4CNDA 3OIJA 4YVKA 4YQRA 4YQ1A 1VH0A 3BBEA 4YQ3A 3E5YA 2QWVA 3IEFA 4MCBA 4MCCA 3KY7A 4JWGA 2HA8A 4E8BA 1Z85A 1X7PA 4KGNA 4YQ0A 4YQ5A 5GM8A 4H3ZA 4YQQA 4IG6A 4MCDA 4YQTA 4JWFA 5GMBA 4YPYA 4JWJA 3KNUA 3L8UA 4YQAA 2EGVA 3N4JA 5GMCA 4YQBA 3O7BA 4YQLA 2EGWA 4YPXA 5D9FA 1VHYA 4YQSA 3GYQA 1TO0A 4JALA 3ONPA 3N4KA 4YVIA 1UALA 4YQCA 4H3YA 4YVGA 3AI9X 4YPZA 1MXIA 3ILKA 4YQNA 4YQPA 3KTYA 1OY5A 4YQGA 4YVHA 4L69A 5FAIA 1UAJA 3AXZA 1GZ0A 2YY8A 1UAKA 4YQ4A 1IPAA 4FAKA 3AIAA 1V2XA 4XBOA 2V3JA 4YQ6A 3NK6A 4JWHA 4FMWA 3KW2A 4YQ8A 3NK7A 5CO4A 4YQ2A 1VHKA 4J3CA 3BBHA 3IC6A 1X7OA 1NS5A 4JAKA 2I6DA 2V3KA 4CNGA 4YQ9A 1K3RA 4PZKA 1V6ZA 3QUVA 4KDZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CX8 A;  4RG1 A;  1NXZ A;  4YQ7 A;  3OII A;  4YQD A;  4YQO A;  1O6D A;  3DCM X;  1ZJR A;  2O3A A;  3BBD A;  1P9P A;  3OIN A;  2QMM A;  2Z0Y A;  4X3L A;  1UAM A;  4YQI A;  1J85 A;  4X3M A;  4YQK A;  4YPW A;  4CNF A;  4CNE A;  4YVJ A;  4YQJ A;  4CND A;  3OIJ A;  4YVK A;  4YQR A;  4YQ1 A;  1VH0 A;  3BBE A;  4YQ3 A;  3E5Y A;  2QWV A;  3IEF A;  4MCB A;  4MCC A;  3KY7 A;  2HA8 A;  4E8B A;  1Z85 A;  1X7P A;  4KGN A;  4YQ0 A;  4YQ5 A;  5GM8 A;  4H3Z A;  4YQQ A;  4IG6 A;  4MCD A;  4YQT A;  5GMB A;  4YPY A;  3KNU A;  3L8U A;  4YQA A;  2EGV A;  3N4J A;  5GMC A;  4YQB A;  3O7B A;  4YQL A;  2EGW A;  4YPX A;  5D9F A;  1VHY A;  4YQS A;  3GYQ A;  1TO0 A;  4JAL A;  3ONP A;  3N4K A;  4YVI A;  1UAL A;  4YQC A;  4H3Y A;  4YVG A;  3AI9 X;  4YPZ A;  1MXI A;  3ILK A;  4YQN A;  4YQP A;  3KTY A;  1OY5 A;  4YQG A;  4YVH A;  4L69 A;  5FAI A;  1UAJ A;  3AXZ A;  1GZ0 A;  2YY8 A;  1UAK A;  4YQ4 A;  1IPA A;  4FAK A;  3AIA A;  1V2X A;  4XBO A;  2V3J A;  4YQ6 A;  3NK6 A;  3KW2 A;  4YQ8 A;  3NK7 A;  5CO4 A;  4YQ2 A;  1VHK A;  4J3C A;  3BBH A;  3IC6 A;  1X7O A;  1NS5 A;  4JAK A;  2I6D A;  2V3K A;  4CNG A;  4YQ9 A;  1K3R A;  4PZK A;  1V6Z A;  3QUV A;  4KDZ A; 
#chains in the Genus database with same CATH topology
 2CX8 A;  4RG1 A;  1NXZ A;  3SSX N;  4YQ7 A;  3OII A;  4YQD A;  4YQO A;  1O6D A;  3DCM X;  1WRP R;  1ZJR A;  2O3A A;  3BBD A;  1P9P A;  3OIN A;  2QMM A;  2XDI A;  2Z0Y A;  4X3L A;  1UAM A;  4YQI A;  1J85 A;  4X3M A;  4YQK A;  4YPW A;  4CNF A;  4CNE A;  4YVJ A;  4YQJ A;  4CND A;  3OIJ A;  1TRO A;  4YVK A;  4YQR A;  4YQ1 A;  1VH0 A;  3WRP A;  3BBE A;  4YQ3 A;  3E5Y A;  2QWV A;  3IEF A;  4MCB A;  4MCC A;  3KY7 A;  4JWG A;  1WRT R;  2HA8 A;  4E8B A;  1Z85 A;  1X7P A;  4KGN A;  4YQ0 A;  4YQ5 A;  5GM8 A;  4H3Z A;  4YQQ A;  4IG6 A;  4MCD A;  4YQT A;  4JWF A;  5GMB A;  4YPY A;  4JWJ A;  3KNU A;  3L8U A;  1CO0 A;  4YQA A;  2EGV A;  3N4J A;  5GMC A;  3KOR A;  4YQB A;  3O7B A;  4YQL A;  2EGW A;  3G1C A;  4YPX A;  5D9F A;  1VHY A;  3GYQ A;  1TO0 A;  1V6Z A;  4JAL A;  3ONP A;  3N4K A;  4YVI A;  1MI7 R;  1UAL A;  4YQC A;  4H3Y A;  4YVG A;  3AI9 X;  1TRR A;  4YPZ A;  3SSW N;  1MXI A;  3ILK A;  4YQN A;  4YQP A;  3KTY A;  1OY5 A;  4YQG A;  4YVH A;  4L69 A;  5FAI A;  1UAJ A;  3AXZ A;  1GZ0 A;  2YY8 A;  1UAK A;  4YQ4 A;  1IPA A;  4FAK A;  3AIA A;  1V2X A;  4XBO A;  1ZT9 A;  2V3J A;  4YQ6 A;  3NK6 A;  1JHG A;  4JWH A;  4FMW A;  3KW2 A;  2OZ9 R;  4YQ8 A;  3NK7 A;  5CO4 A;  4YQ2 A;  3FRW A;  1VHK A;  4J3C A;  3BBH A;  3IC6 A;  1X7O A;  1NS5 A;  4JAK A;  2I6D A;  1WRS R;  2V3K A;  1RCS A;  4CNG A;  4YQ9 A;  1K3R A;  4PZK A;  4YQS A;  3QUV A;  4KDZ A; 
#chains in the Genus database with same CATH homology
 2CX8 A;  4RG1 A;  1NXZ A;  4YQ7 A;  3OII A;  4YQD A;  4YQO A;  1O6D A;  3DCM X;  1ZJR A;  2O3A A;  3BBD A;  1P9P A;  3OIN A;  2QMM A;  2Z0Y A;  4X3L A;  1UAM A;  4YQI A;  1J85 A;  4X3M A;  4YQK A;  4YPW A;  4CNF A;  4CNE A;  4YVJ A;  4YQJ A;  4CND A;  3OIJ A;  4YVK A;  4YQR A;  4YQ1 A;  1VH0 A;  3BBE A;  4YQ3 A;  3E5Y A;  2QWV A;  3IEF A;  4MCB A;  4MCC A;  3KY7 A;  4JWG A;  2HA8 A;  4E8B A;  1Z85 A;  1X7P A;  4KGN A;  4YQ0 A;  4YQ5 A;  5GM8 A;  4H3Z A;  4YQQ A;  4IG6 A;  4MCD A;  4YQT A;  4JWF A;  5GMB A;  4YPY A;  4JWJ A;  3KNU A;  3L8U A;  4YQA A;  2EGV A;  3N4J A;  5GMC A;  4YQB A;  3O7B A;  4YQL A;  2EGW A;  4YPX A;  5D9F A;  1VHY A;  4YQS A;  3GYQ A;  1TO0 A;  4JAL A;  3ONP A;  3N4K A;  4YVI A;  1UAL A;  4YQC A;  4H3Y A;  4YVG A;  3AI9 X;  4YPZ A;  1MXI A;  3ILK A;  4YQN A;  4YQP A;  3KTY A;  1OY5 A;  4YQG A;  4YVH A;  4L69 A;  5FAI A;  1UAJ A;  3AXZ A;  1GZ0 A;  2YY8 A;  1UAK A;  4YQ4 A;  1IPA A;  4FAK A;  3AIA A;  1V2X A;  4XBO A;  2V3J A;  4YQ6 A;  3NK6 A;  4JWH A;  4FMW A;  3KW2 A;  4YQ8 A;  3NK7 A;  5CO4 A;  4YQ2 A;  1VHK A;  4J3C A;  3BBH A;  3IC6 A;  1X7O A;  1NS5 A;  4JAK A;  2I6D A;  2V3K A;  4CNG A;  4YQ9 A;  1K3R A;  4PZK A;  1V6Z A;  3QUV A;  4KDZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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