3AXZA

Crystal structure of haemophilus influenzae trmd in complex with adenosine
Total Genus 68
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
68
Knots found
sequence length
252
structure length
241
Chain Sequence
b'VPRGSHMWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVLADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQRKLLKEAQAEHNS'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords tRNA (guanine-N(1)-)-methyltransferase
publication title Differentiating analogous tRNA methyltransferases by fragments of the methyl donor.
pubmed doi rcsb
source organism Haemophilus influenzae
molecule tags Transferase
total genus 68
structure length 241
sequence length 252
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.228: tRNA (guanine(37)-N(1))-methyltransferase.
pdb deposition date 2011-04-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01746 tRNA_m1G_MT tRNA (Guanine-1)-methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.20 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A tRNA(m1g37)methyltransferase, domain 2 3axzA02
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3axzA01
1ZJRA 1GZ0A 3AI9X 3E5YA 1VHYA 1X7PA 4YQIA 4YQ4A 4YVIA 3BBDA 4YQ0A 3KNUA 3N4JA 4XBOA 1MXIA 4YPZA 4YQAA 2I6DA 2QWVA 2YY8A 4YVKA 1UAJA 1NXZA 4YQ3A 4J3CA 4KDZA 4IG6A 5FAIA 4YQ1A 2V3KA 4JALA 5CO4A 4YQLA 4KGNA 3KTYA 5GMCA 4YQ2A 2QMMA 1OY5A 3NK6A 3BBHA 4YVGA 4CNDA 3GYQA 1TO0A 2O3AA 1Z85A 3KW2A 4MCBA 4PZKA 2CX8A 2HA8A 5GMBA 3IEFA 1UALA 4YQNA 4YQ8A 3O7BA 4YQ6A 1X7OA 4RG1A 5D9FA 3L8UA 4YQGA 4YQ9A 1V2XA 3N4KA 3OINA 1P9PA 4CNFA 3QUVA 4YQQA 3IC6A 1K3RA 4CNEA 4YQCA 1VHKA 2EGWA 4YVJA 4H3YA 4YQOA 4YQTA 4YPWA 4YQKA 1VH0A 1UAKA 2V3JA 3AIAA 3NK7A 1NS5A 3OIJA 4YQRA 4L69A 4YQBA 1IPAA 4E8BA 4H3ZA 4YPXA 1J85A 4YQJA 3AXZA 4YVHA 2EGVA 4YQ7A 3KY7A 1UAMA 3DCMX 4YQDA 4CNGA 4X3LA 3BBEA 4FAKA 4YQSA 4YQ5A 1O6DA 4YPYA 2Z0YA 5GM8A 4YQPA 4JAKA 1V6ZA 3ONPA 4MCDA 3OIIA 4MCCA 4X3MA 3ILKA
chains in the Genus database with same CATH superfamily
1ZJRA 1GZ0A 3AI9X 3E5YA 1VHYA 1X7PA 1ZT9A 4YQIA 4YQ4A 4YVIA 3FRWA 3BBDA 4YQ0A 4JWHA 3KNUA 3N4JA 4XBOA 2OZ9R 4FMWA 4JWGA 1RCSA 1MXIA 4YPZA 4YQAA 2I6DA 2QWVA 2YY8A 4YVKA 1UAJA 1NXZA 1MI7R 4YQ3A 4J3CA 4KDZA 4IG6A 5FAIA 4YQ1A 2V3KA 4JALA 5CO4A 4YQLA 4KGNA 3KTYA 5GMCA 4YQ2A 2QMMA 1OY5A 3NK6A 1JHGA 3BBHA 4YVGA 4CNDA 3GYQA 1TO0A 2O3AA 1Z85A 3KW2A 4MCBA 4PZKA 2CX8A 2HA8A 5GMBA 3IEFA 3SSXN 4JWJA 1UALA 4YQNA 4YQ8A 3O7BA 4YQ6A 1WRSR 1X7OA 4RG1A 5D9FA 3L8UA 4YQGA 4YQ9A 1V2XA 3N4KA 3OINA 1P9PA 4CNFA 1WRPR 3QUVA 4YQQA 3IC6A 1K3RA 4CNEA 3KORA 4YQCA 1VHKA 2EGWA 4YVJA 4H3YA 4YQOA 3SSWN 4YQTA 4YPWA 4YQKA 1VH0A 1UAKA 2V3JA 3AIAA 3NK7A 1NS5A 3OIJA 4YQRA 3WRPA 4L69A 4JWFA 4YQBA 1IPAA 4E8BA 4H3ZA 4YPXA 1J85A 4YQJA 3AXZA 4YVHA 2EGVA 4YQ7A 1TRRA 3KY7A 1UAMA 3DCMX 4YQDA 1TROA 4X3LA 4CNGA 2XDIA 3BBEA 4FAKA 4YQSA 4YQ5A 1O6DA 1WRTR 4YPYA 2Z0YA 1CO0A 5GM8A 4YQPA 4JAKA 1V6ZA 3ONPA 4MCDA 3OIIA 4MCCA 4X3MA 3G1CA 3ILKA
chains in the Genus database with same CATH topology
1ZJRA 1GZ0A 3AI9X 3E5YA 1VHYA 1X7PA 4YQIA 4YQ4A 4YVIA 3BBDA 4YQ0A 4JWHA 3KNUA 3N4JA 4XBOA 4FMWA 4JWGA 1MXIA 4YPZA 4YQAA 2I6DA 2QWVA 2YY8A 4YVKA 1UAJA 1NXZA 4YQ3A 4J3CA 4KDZA 4IG6A 5FAIA 4YQ1A 2V3KA 4JALA 5CO4A 4YQLA 4KGNA 3KTYA 5GMCA 4YQ2A 2QMMA 1OY5A 3NK6A 3BBHA 4YVGA 4CNDA 3GYQA 1TO0A 2O3AA 1Z85A 3KW2A 4MCBA 4PZKA 2CX8A 2HA8A 5GMBA 3IEFA 4JWJA 1UALA 4YQNA 4YQ8A 3O7BA 4YQ6A 1X7OA 4RG1A 5D9FA 3L8UA 4YQGA 4YQ9A 1V2XA 3N4KA 3OINA 1P9PA 4CNFA 3QUVA 4YQQA 3IC6A 1K3RA 4CNEA 4YQCA 1VHKA 2EGWA 4YVJA 4H3YA 4YQOA 4YQTA 4YPWA 4YQKA 1VH0A 1UAKA 2V3JA 3AIAA 3NK7A 1NS5A 3OIJA 4YQRA 4L69A 4JWFA 4YQBA 1IPAA 4E8BA 4H3ZA 4YPXA 1J85A 4YQJA 3AXZA 4YVHA 2EGVA 4YQ7A 3KY7A 1UAMA 3DCMX 4YQDA 4CNGA 4X3LA 3BBEA 4FAKA 4YQSA 4YQ5A 1O6DA 4YPYA 2Z0YA 5GM8A 4YQPA 4JAKA 1V6ZA 3ONPA 4MCDA 3OIIA 4MCCA 4X3MA 3ILKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZJR A;  1GZ0 A;  3AI9 X;  3E5Y A;  1VHY A;  1X7P A;  4YQI A;  4YQ4 A;  4YVI A;  3BBD A;  4YQ0 A;  3KNU A;  3N4J A;  4XBO A;  1MXI A;  4YPZ A;  4YQA A;  2I6D A;  2QWV A;  2YY8 A;  4YVK A;  1UAJ A;  1NXZ A;  4YQ3 A;  4J3C A;  4KDZ A;  4IG6 A;  5FAI A;  4YQ1 A;  2V3K A;  4JAL A;  5CO4 A;  4YQL A;  4KGN A;  3KTY A;  5GMC A;  4YQ2 A;  2QMM A;  1OY5 A;  3NK6 A;  3BBH A;  4YVG A;  4CND A;  3GYQ A;  1TO0 A;  2O3A A;  1Z85 A;  3KW2 A;  4MCB A;  4PZK A;  2CX8 A;  2HA8 A;  5GMB A;  3IEF A;  1UAL A;  4YQN A;  4YQ8 A;  3O7B A;  4YQ6 A;  1X7O A;  4RG1 A;  5D9F A;  3L8U A;  4YQG A;  4YQ9 A;  1V2X A;  3N4K A;  3OIN A;  1P9P A;  4CNF A;  3QUV A;  4YQQ A;  3IC6 A;  1K3R A;  4CNE A;  4YQC A;  1VHK A;  2EGW A;  4YVJ A;  4H3Y A;  4YQO A;  4YQT A;  4YPW A;  4YQK A;  1VH0 A;  1UAK A;  2V3J A;  3AIA A;  3NK7 A;  1NS5 A;  3OIJ A;  4YQR A;  4L69 A;  4YQB A;  1IPA A;  4E8B A;  4H3Z A;  4YPX A;  1J85 A;  4YQJ A;  3AXZ A;  4YVH A;  2EGV A;  4YQ7 A;  3KY7 A;  1UAM A;  3DCM X;  4YQD A;  4CNG A;  4X3L A;  3BBE A;  4FAK A;  4YQS A;  4YQ5 A;  1O6D A;  4YPY A;  2Z0Y A;  5GM8 A;  4YQP A;  4JAK A;  1V6Z A;  3ONP A;  4MCD A;  3OII A;  4MCC A;  4X3M A;  3ILK A; 
#chains in the Genus database with same CATH topology
 1ZJR A;  1GZ0 A;  3AI9 X;  3E5Y A;  1VHY A;  1X7P A;  1ZT9 A;  4YQI A;  4YQ4 A;  4YVI A;  3FRW A;  3BBD A;  4YQ0 A;  4JWH A;  3KNU A;  3N4J A;  4XBO A;  2OZ9 R;  4FMW A;  4JWG A;  1RCS A;  1MXI A;  4YPZ A;  4YQA A;  2I6D A;  2QWV A;  2YY8 A;  4YVK A;  1UAJ A;  1NXZ A;  1MI7 R;  4YQ3 A;  4J3C A;  4KDZ A;  4IG6 A;  5FAI A;  4YQ1 A;  2V3K A;  4JAL A;  5CO4 A;  4YQL A;  4KGN A;  3KTY A;  5GMC A;  4YQ2 A;  2QMM A;  1OY5 A;  3NK6 A;  1JHG A;  3BBH A;  4YVG A;  4CND A;  3GYQ A;  1TO0 A;  2O3A A;  1Z85 A;  3KW2 A;  4MCB A;  4PZK A;  2CX8 A;  2HA8 A;  5GMB A;  3IEF A;  3SSX N;  4JWJ A;  1UAL A;  4YQN A;  4YQ8 A;  3O7B A;  4YQ6 A;  1WRS R;  1X7O A;  4RG1 A;  5D9F A;  3L8U A;  4YQG A;  4YQ9 A;  1V2X A;  3N4K A;  3OIN A;  1P9P A;  4CNF A;  1WRP R;  3QUV A;  4YQQ A;  3IC6 A;  1K3R A;  4CNE A;  3KOR A;  4YQC A;  1VHK A;  2EGW A;  4YVJ A;  4H3Y A;  4YQO A;  3SSW N;  4YQT A;  4YPW A;  4YQK A;  1VH0 A;  1UAK A;  2V3J A;  3AIA A;  3NK7 A;  1NS5 A;  3OIJ A;  4YQR A;  3WRP A;  4L69 A;  4JWF A;  4YQB A;  1IPA A;  4E8B A;  4H3Z A;  4YPX A;  1J85 A;  4YQJ A;  3AXZ A;  4YVH A;  2EGV A;  4YQ7 A;  1TRR A;  3KY7 A;  1UAM A;  3DCM X;  4YQD A;  1TRO A;  4X3L A;  4CNG A;  2XDI A;  3BBE A;  4FAK A;  4YQS A;  4YQ5 A;  1O6D A;  1WRT R;  4YPY A;  2Z0Y A;  1CO0 A;  5GM8 A;  4YQP A;  4JAK A;  1V6Z A;  3ONP A;  4MCD A;  3OII A;  4MCC A;  4X3M A;  3G1C A;  3ILK A; 
#chains in the Genus database with same CATH homology
 1ZJR A;  1GZ0 A;  3AI9 X;  3E5Y A;  1VHY A;  1X7P A;  4YQI A;  4YQ4 A;  4YVI A;  3BBD A;  4YQ0 A;  4JWH A;  3KNU A;  3N4J A;  4XBO A;  4FMW A;  4JWG A;  1MXI A;  4YPZ A;  4YQA A;  2I6D A;  2QWV A;  2YY8 A;  4YVK A;  1UAJ A;  1NXZ A;  4YQ3 A;  4J3C A;  4KDZ A;  4IG6 A;  5FAI A;  4YQ1 A;  2V3K A;  4JAL A;  5CO4 A;  4YQL A;  4KGN A;  3KTY A;  5GMC A;  4YQ2 A;  2QMM A;  1OY5 A;  3NK6 A;  3BBH A;  4YVG A;  4CND A;  3GYQ A;  1TO0 A;  2O3A A;  1Z85 A;  3KW2 A;  4MCB A;  4PZK A;  2CX8 A;  2HA8 A;  5GMB A;  3IEF A;  4JWJ A;  1UAL A;  4YQN A;  4YQ8 A;  3O7B A;  4YQ6 A;  1X7O A;  4RG1 A;  5D9F A;  3L8U A;  4YQG A;  4YQ9 A;  1V2X A;  3N4K A;  3OIN A;  1P9P A;  4CNF A;  3QUV A;  4YQQ A;  3IC6 A;  1K3R A;  4CNE A;  4YQC A;  1VHK A;  2EGW A;  4YVJ A;  4H3Y A;  4YQO A;  4YQT A;  4YPW A;  4YQK A;  1VH0 A;  1UAK A;  2V3J A;  3AIA A;  3NK7 A;  1NS5 A;  3OIJ A;  4YQR A;  4L69 A;  4JWF A;  4YQB A;  1IPA A;  4E8B A;  4H3Z A;  4YPX A;  1J85 A;  4YQJ A;  3AXZ A;  4YVH A;  2EGV A;  4YQ7 A;  3KY7 A;  1UAM A;  3DCM X;  4YQD A;  4CNG A;  4X3L A;  3BBE A;  4FAK A;  4YQS A;  4YQ5 A;  1O6D A;  4YPY A;  2Z0Y A;  5GM8 A;  4YQP A;  4JAK A;  1V6Z A;  3ONP A;  4MCD A;  3OII A;  4MCC A;  4X3M A;  3ILK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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