3AY5A

Crystal structure of hhm (human homologue of murine maternal id-like molecule)
Total Genus 122
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
122
sequence length
347
structure length
298
Chain Sequence
LASPLEQLRHLAEELRLLLPRVRVGEATEEFNREMFWRRLNEAAVTVSREATTLTIVFSQLPLPSPQETQKFCEQVHAAIKAFIAVYYLLPKDQGITLRKLVRGATLDIVDGMAQLMEVLSVNSVWVACQQMPQIPRDNKAAALLMLTKNVDFVKDAHEEMEQAVEESDPQDLYWSEDDQELIIPCLALVRASKACLKKIRMLVAENGKKDQVAQLDDIVDISDEISPSVDDLALSIYPPMSHLTVRINSAKLVSVLKKALEITKASHVTPSWIPLLINAIDHCMNRIKELTQSELEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell cycle
molecule keywords Cyclin-D1-binding protein 1
publication title Structure of a dominant-negative helix-loop-helix transcriptional regulator suggests mechanisms of autoinhibition.
pubmed doi rcsb
source organism Homo sapiens
total genus 122
structure length 298
sequence length 347
ec nomenclature
pdb deposition date 2011-04-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13324 GCIP Grap2 and cyclin-D-interacting
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1410.10 Mainly Alpha Up-down Bundle I/LWEQ domain I/LWEQ domain 3ay5A02
1.20.1420.10 Mainly Alpha Up-down Bundle A middle domain of Talin 1 Talin, central domain 3ay5A01
3AY5A 4W8PA 2L10A 2KBBA 1SJ8A 2JSWA 3DYJA 5FZTA 3FYQA 1R0DA 2KVPA 2L7NA 1SJ7A 2X0CA 4F7GB 2KGXA
chains in the Genus database with same CATH superfamily
2L10A 5HXHA 5JDMA 5HYAA 2XQYA 2MTCA 2KGXA 3PF0A 3M1CA 3WURA 3VJZA 5JDLA 5JDHA 3FYQA 4ECGA 5T1DA 1R0DA 3PHF1 2X0CA 5HWXA 3AY5A 3V5SA 2KBBA 5JDFA 5HXEA 5FZTA 5HWYA 3AT7A 5JDGA 5JDNA 3DYJA 2KVPA 4ONRA 2L7NA 3WSCA 5HXSA 4F7GB 4W8PA 5HXCA 1SJ8A 2JSWA 5JDQA 5HXRA 4BGOA 1SJ7A 3V5UA 2LQUA
chains in the Genus database with same CATH topology
3AY5A 4W8PA 2L10A 2KBBA 1SJ8A 2JSWA 3DYJA 5FZTA 3FYQA 1R0DA 2KVPA 2L7NA 1SJ7A 2X0CA 4F7GB 2KGXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AY5 A;  4W8P A;  2L10 A;  2KBB A;  1SJ8 A;  2JSW A;  3DYJ A;  5FZT A;  3FYQ A;  1R0D A;  2KVP A;  2L7N A;  1SJ7 A;  2X0C A;  4F7G B;  2KGX A; 
#chains in the Genus database with same CATH topology
 2L10 A;  5HXH A;  5JDM A;  5HYA A;  2XQY A;  2MTC A;  2KGX A;  3PF0 A;  3M1C A;  3WUR A;  3VJZ A;  5JDL A;  5JDH A;  3FYQ A;  4ECG A;  5T1D A;  1R0D A;  3PHF 1;  2X0C A;  5HWX A;  3AY5 A;  3V5S A;  2KBB A;  5JDF A;  5HXE A;  5FZT A;  5HWY A;  3AT7 A;  5JDG A;  5JDN A;  3DYJ A;  2KVP A;  4ONR A;  2L7N A;  3WSC A;  5HXS A;  4F7G B;  4W8P A;  5HXC A;  1SJ8 A;  2JSW A;  5JDQ A;  5HXR A;  4BGO A;  1SJ7 A;  3V5U A;  2LQU A; 
#chains in the Genus database with same CATH homology
 3AY5 A;  4W8P A;  2L10 A;  2KBB A;  1SJ8 A;  2JSW A;  3DYJ A;  5FZT A;  3FYQ A;  1R0D A;  2KVP A;  2L7N A;  1SJ7 A;  2X0C A;  4F7G B;  2KGX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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