3AYHA

Crystal structure of the c17/25 subcomplex from s. pombe rna polymerase iii
Total Genus 44
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
134
structure length
134
Chain Sequence
b'SAGDPMKVLEARDAYLTNAEVFFHLKEMENEQNARTQERGAAQALVCENLRTIQFEILKYLSSQGNCEGLTKERFLDCIAIFNEFELTKAEILVILNNKPSSVPELYACIEGIEERFKEEDIFKLVEKINTTFP'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords DNA-directed RNA polymerase III subunit rpc9
publication title Crystal structure of the C17/25 subcomplex from Schizosaccharomyces pombe RNA polymerase III
pubmed doi rcsb
source organism Schizosaccharomyces pombe
molecule tags Transcription
total genus 44
structure length 134
sequence length 134
ec nomenclature
pdb deposition date 2011-05-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03874 RNA_pol_Rpb4 RNA polymerase Rpb4
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.40 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; Growth Hormone; Chain: A; 3ayhA00
3HOVD 3HOXD 4A3KD 2JA6D 3HOYD 3FKID 3PO3D 4A93D 5IYCD 4BY1D 4A3GD 2JA8D 5C44D 1Y1VD 3I4MD 4A3CD 4A3MD 3I4ND 4A3ID 2B63D 1Y14A 5IP7D 4A3ED 4A3DD 5C3ED 5IYBD 1Y1WD 5C4XD 1WCMD 3PO2D 5IP9D 3HOZD 3H3VE 5FLMD 4BXXD 2VUMD 3HOUD 4A3JD 3HOWD 2R92D 4BY7D 4A3LD 4A3BD 2C35A 5IYDD 2JA7D 4BBSD 3H0GD 2R7ZD 4A3FD 2R93D 4BBRD 2JA5D 3AYHA
chains in the Genus database with same CATH superfamily
1BGEA 4A3DD 1Y6ML 5D59A 1LKIA 3DGCL 1A7MA 4QIQA 3PIVA 1EVSA 1CN4C 1PW4A 4ZF7A 3HMXB 4NN5A 3NCCA 2JA5D 1IJZA 2D48A 5TS9A 4IU8A 1FG9A 1N1FA 1GA3A 4EXNA 1HIKA 5C3ED 4OAAA 2L3OA 3QB1A 3UF2A 3PO2D 1ITIA 3H3VE 4TPGA 1ITLA 2ILKA 2R92D 3VA2A 4LDSA 1RCBA 4IKZA 1LK3A 2JA7D 4DKDA 2R7ZD 1CSGA 1IL6A 5A2NA 3UEZE 2KZ1A 3PO3D 3D87A 1FYHA 2B63D 1Y14A 3BPOA 1IK0A 4BXXD 4PS4A 1ITFA 2GMFA 1J7VL 4YUEC 3EJJA 3QAZA 5IYCD 5D71A 2O26A 3WCYI 4WRLB 1D9CA 2VUMD 1SCFA 3D48P 3HOWD 4TPHA 2Z3RA 4BY7D 2CFPA 2B8UA 4TPJA 3NCEA 1LQSL 4IKYA 5A2OA 1AX8A 4GS7A 2B5IA 4O6KA 4ZWBA 1PGRA 1I1RB 1PW6A 4YPGC 2Q7NB 1M4BA 1IARA 5EQHA 3IRHA 2LMSA 1D9GA 4RS1A 1ALUA 1EXZA 4A3JD 1M48A 1CYLA 3OQ3A 1NBPA 2CFQA 5C7XA 3B5KA 4A3BD 4D2DA 4J05A 1CNT1 5LQBA 1F6FA 4A3KD 1RFBA 5C65A 4NN7A 4U4VA 4NI9A 1BGCA 4ZW9A 1ITMA 1ILKA 3BPLA 4D2CA 4IKVA 4J4LC 3LB6A 3FKID 3HHCA 2LAGA 3BESL 3L5WI 3DI3A 4YB9D 1M49A 5EQIA 2O27A 4A3ED 1RHGA 2XQBA 3WDOA 4CNIC 5FLMD 3QWRB 4A3LD 1EMRA 5IYDD 4BBSD 1A22A 3H0GD 3NCBA 1KF9A 3HOVD 3LB6B 2PSMA 4IKWA 4NEJA 1PV6A 4A3ID 5D22A 2Q14A 3OG4A 1HGUA 4GRWA 5IP9D 1INRA 5GXBA 1AU1A 4D2BA 2D9QA 4DKCA 4IKXA 1HIJA 1HUWA 2R93D 4GC0A 1HWGA 1EKUA 2JA8D 1V7MV 4GBYA 5D72A 2CYKA 1Y1WD 4ZYRA 1ETEA 4OH3A 1PV7A 3NCFA 3HOUD 1V7NV 2INTA 4Z5RD 4NI7A 1PY2A 2OQPA 3O7QA 2V8NA 4DKEA 1EERA 4LEPA 4BBRD 2Q98A 4YBQA 3INKC 4A3CD 4A3MD 4O9HA 2XUTA 3EW3A 3OG6A 1BP3A 4PYPA 3DLQI 4X51A 3BPNA 1BGDA 3UX9A 3QT2C 5D28B 4UVMA 2ERJD 2H24A 4NKQC 3G6DA 2B8XA 5EQGA 4I77Z 3N06A 3Q1SI 1BCNA 3G9VB 5IP7D 1F45B 1WCMD 4ZWCA 3O7PA 1BUYA 4FA8E 3TGXB 3NPZA 4APSA 4W6VA 1HWHA 1AXIA 4JA3A 1VLKA 5FUCA 4NEMA 4BY1D 5C44D 3S9DA 1Y6NL 5IYBD 3QB7A 4IU9A 3PIWA 4Q65A 4XNIA 3N0PA 3SE3B 4DKFA 3DI2A 2C35A 2Z3QA 4JR9A 2B8ZA 4YDYI 2B91A 3AYHA 3HHRA 3DUHC 4A93D 3D85C 1M47A 5FHXA 1IRLA 1B5LA 1PVHB 1Z92A 5KNHI 1M4CA 4ZS7A 1HZIA 2E9WC 2IL6A 1M4AA 1QVNA 4DOHA 1P9MB 4LRLA 1JLIA 2HYMB 1HULA 4U4WA 1RW5A 1GNCA 1WU3I 5E4EA 4NN6A 4U4TA 5D70A 1BBNA 2Y5YA 4EXPA 3HOXD 3HOYD 4A3GD 2B8YA 5L6YC 1Y1VD 2O6IA 3I4ND 5C4XD 3MZGA 4YQXA 3L5XA 4MHLA 3SE4B 4A3FD 5D58A 2JA6D 2L3YA 3UF5A 4XNJA 4JREA 3I4MD 1Z7CA 4GBZA 1CD9A 5D6KA 1M4RA 3HOZD 1YKBA 2B90A 1Y6KL
chains in the Genus database with same CATH topology
3HHRA 1AX8A 3DUHC 4A93D 4GS7A 1HWGA 1EKUA 2B5IA 3D85C 4O6KA 1BGEA 1M47A 2JA8D 1PGRA 1V7MV 1I1RB 5D72A 5FHXA 1PW6A 1IRLA 4YPGC 4A3DD 1B5LA 1PVHB 2CYKA 2Q7NB 1M4BA 1Y6ML 1Z92A 1Y1WD 1ETEA 1IARA 3IRHA 1LKIA 2LMSA 1D9GA 1M4CA 5KNHI 3NCFA 3HOUD 1V7NV 4RS1A 2INTA 1ALUA 1EXZA 4Z5RD 4A3JD 1CYLA 1M48A 3DGCL 4NI7A 1PY2A 3OQ3A 1NBPA 2OQPA 3PIVA 3B5KA 4DKEA 1EERA 4ZS7A 1HZIA 1EVSA 1CN4C 2E9WC 2IL6A 4ZF7A 1M4AA 1QVNA 3HMXB 1CNT1 4NN5A 3NCCA 4BBRD 1F6FA 5LQBA 2JA5D 1IJZA 2D48A 5TS9A 4A3KD 1FG9A 2Q98A 1N1FA 4DOHA 1P9MB 3INKC 4LRLA 1GA3A 4EXNA 4A3CD 4A3MD 1RFBA 1JLIA 4NN7A 4O9HA 2HYMB 1HIKA 5C3ED 4NI9A 2L3OA 1HULA 3EW3A 3OG6A 3QB1A 3UF2A 3PO2D 1ITIA 3H3VE 1ITLA 1BGCA 1RW5A 1BP3A 2ILKA 1GNCA 3DLQI 2R92D 1ITMA 3VA2A 1ILKA 3BPLA 1RCBA 1WU3I 1LK3A 3BPNA 4X51A 5E4EA 2JA7D 4DKDA 4NN6A 5D70A 2R7ZD 1CSGA 1BGDA 1IL6A 3QT2C 3UX9A 1BBNA 3UEZE 4EXPA 4J4LC 2KZ1A 3HOXD 3HOYD 3LB6A 5D28B 3FKID 3HHCA 3PO3D 2LAGA 2ERJD 3BESL 3L5WI 2H24A 2B8YA 3D87A 3DI3A 3G6DA 1M49A 2B8XA 4NKQC 5L6YC 4A3GD 1Y1VD 1BCNA 1FYHA 2O27A 2O6IA 3N06A 3Q1SI 3G9VB 4I77Z 3I4ND 1Y14A 5IP7D 4A3ED 2B63D 1F45B 1RHGA 2XQBA 3BPOA 1WCMD 5C4XD 4CNIC 3MZGA 1BUYA 5FLMD 4FA8E 3TGXB 1IK0A 4BXXD 3NPZA 4YQXA 1A7MA 4PS4A 3L5XA 3QWRB 4MHLA 4A3LD 1ITFA 3SE4B 1EMRA 1HWHA 1AXIA 2GMFA 5IYDD 4BBSD 1A22A 3H0GD 1VLKA 5FUCA 1J7VL 4NEMA 4YUEC 4A3FD 3NCBA 1KF9A 3HOVD 2JA6D 3EJJA 3QAZA 2L3YA 3UF5A 5IYCD 4BY1D 3LB6B 2PSMA 5C44D 3S9DA 1Y6NL 3I4MD 5D71A 2O26A 4NEJA 4A3BD 1Z7CA 4A3ID 5D22A 2Q14A 3OG4A 3WCYI 1HGUA 4GRWA 1CD9A 3QB7A 5IYBD 1M4RA 4WRLB 5IP9D 3HOZD 1INRA 1D9CA 1AU1A 3PIWA 1YKBA 2VUMD 1SCFA 3D48P 3N0PA 2D9QA 3HOWD 3SE3B 2Z3RA 4DKFA 4BY7D 2B90A 2B8UA 3DI2A 1LQSL 2C35A 3NCEA 2Z3QA 4DKCA 5C7XA 1HIJA 2B8ZA 1HUWA 4YDYI 2R93D 1Y6KL 2B91A 3AYHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HOV D;  3HOX D;  4A3K D;  2JA6 D;  3HOY D;  3FKI D;  3PO3 D;  4A93 D;  5IYC D;  4BY1 D;  4A3G D;  2JA8 D;  5C44 D;  1Y1V D;  3I4M D;  4A3C D;  4A3M D;  3I4N D;  4A3I D;  2B63 D;  1Y14 A;  5IP7 D;  4A3E D;  4A3D D;  5C3E D;  5IYB D;  1Y1W D;  5C4X D;  1WCM D;  3PO2 D;  5IP9 D;  3HOZ D;  3H3V E;  5FLM D;  4BXX D;  2VUM D;  3HOU D;  4A3J D;  3HOW D;  2R92 D;  4BY7 D;  4A3L D;  4A3B D;  2C35 A;  5IYD D;  2JA7 D;  4BBS D;  3H0G D;  2R7Z D;  4A3F D;  2R93 D;  4BBR D;  2JA5 D;  3AYH A; 
#chains in the Genus database with same CATH topology
 1BGE A;  4A3D D;  1Y6M L;  5D59 A;  1LKI A;  3DGC L;  1A7M A;  4QIQ A;  3PIV A;  1EVS A;  1CN4 C;  1PW4 A;  4ZF7 A;  3HMX B;  4NN5 A;  3NCC A;  2JA5 D;  1IJZ A;  2D48 A;  5TS9 A;  4IU8 A;  1FG9 A;  1N1F A;  1GA3 A;  4EXN A;  1HIK A;  5C3E D;  4OAA A;  2L3O A;  3QB1 A;  3UF2 A;  3PO2 D;  1ITI A;  3H3V E;  4TPG A;  1ITL A;  2ILK A;  2R92 D;  3VA2 A;  4LDS A;  1RCB A;  4IKZ A;  1LK3 A;  2JA7 D;  4DKD A;  2R7Z D;  1CSG A;  1IL6 A;  5A2N A;  3UEZ E;  2KZ1 A;  3PO3 D;  3D87 A;  1FYH A;  2B63 D;  1Y14 A;  3BPO A;  1IK0 A;  4BXX D;  4PS4 A;  1ITF A;  2GMF A;  1J7V L;  4YUE C;  3EJJ A;  3QAZ A;  5IYC D;  5D71 A;  2O26 A;  3WCY I;  4WRL B;  1D9C A;  2VUM D;  1SCF A;  3D48 P;  3HOW D;  4TPH A;  2Z3R A;  4BY7 D;  2CFP A;  2B8U A;  4TPJ A;  3NCE A;  1LQS L;  4IKY A;  5A2O A;  1AX8 A;  4GS7 A;  2B5I A;  4O6K A;  4ZWB A;  1PGR A;  1I1R B;  1PW6 A;  4YPG C;  2Q7N B;  1M4B A;  1IAR A;  5EQH A;  3IRH A;  2LMS A;  1D9G A;  4RS1 A;  1ALU A;  1EXZ A;  4A3J D;  1M48 A;  1CYL A;  3OQ3 A;  1NBP A;  2CFQ A;  5C7X A;  3B5K A;  4A3B D;  4D2D A;  4J05 A;  1CNT 1;  5LQB A;  1F6F A;  4A3K D;  1RFB A;  5C65 A;  4NN7 A;  4U4V A;  4NI9 A;  1BGC A;  4ZW9 A;  1ITM A;  1ILK A;  3BPL A;  4D2C A;  4IKV A;  4J4L C;  3LB6 A;  3FKI D;  3HHC A;  2LAG A;  3BES L;  3L5W I;  3DI3 A;  4YB9 D;  1M49 A;  5EQI A;  2O27 A;  4A3E D;  1RHG A;  2XQB A;  3WDO A;  4CNI C;  5FLM D;  3QWR B;  4A3L D;  1EMR A;  5IYD D;  4BBS D;  1A22 A;  3H0G D;  3NCB A;  1KF9 A;  3HOV D;  3LB6 B;  2PSM A;  4IKW A;  4NEJ A;  1PV6 A;  4A3I D;  5D22 A;  2Q14 A;  3OG4 A;  1HGU A;  4GRW A;  5IP9 D;  1INR A;  5GXB A;  1AU1 A;  4D2B A;  2D9Q A;  4DKC A;  4IKX A;  1HIJ A;  1HUW A;  2R93 D;  4GC0 A;  1HWG A;  1EKU A;  2JA8 D;  1V7M V;  4GBY A;  5D72 A;  2CYK A;  1Y1W D;  4ZYR A;  1ETE A;  4OH3 A;  1PV7 A;  3NCF A;  3HOU D;  1V7N V;  2INT A;  4Z5R D;  4NI7 A;  1PY2 A;  2OQP A;  3O7Q A;  2V8N A;  4DKE A;  1EER A;  4LEP A;  4BBR D;  2Q98 A;  4YBQ A;  3INK C;  4A3C D;  4A3M D;  4O9H A;  2XUT A;  3EW3 A;  3OG6 A;  1BP3 A;  4PYP A;  3DLQ I;  4X51 A;  3BPN A;  1BGD A;  3UX9 A;  3QT2 C;  5D28 B;  4UVM A;  2ERJ D;  2H24 A;  4NKQ C;  3G6D A;  2B8X A;  5EQG A;  4I77 Z;  3N06 A;  3Q1S I;  1BCN A;  3G9V B;  5IP7 D;  1F45 B;  1WCM D;  4ZWC A;  3O7P A;  1BUY A;  4FA8 E;  3TGX B;  3NPZ A;  4APS A;  4W6V A;  1HWH A;  1AXI A;  4JA3 A;  1VLK A;  5FUC A;  4NEM A;  4BY1 D;  5C44 D;  3S9D A;  1Y6N L;  5IYB D;  3QB7 A;  4IU9 A;  3PIW A;  4Q65 A;  4XNI A;  3N0P A;  3SE3 B;  4DKF A;  3DI2 A;  2C35 A;  2Z3Q A;  4JR9 A;  2B8Z A;  4YDY I;  2B91 A;  3AYH A;  3HHR A;  3DUH C;  4A93 D;  3D85 C;  1M47 A;  5FHX A;  1IRL A;  1B5L A;  1PVH B;  1Z92 A;  5KNH I;  1M4C A;  4ZS7 A;  1HZI A;  2E9W C;  2IL6 A;  1M4A A;  1QVN A;  4DOH A;  1P9M B;  4LRL A;  1JLI A;  2HYM B;  1HUL A;  4U4W A;  1RW5 A;  1GNC A;  1WU3 I;  5E4E A;  4NN6 A;  4U4T A;  5D70 A;  1BBN A;  2Y5Y A;  4EXP A;  3HOX D;  3HOY D;  4A3G D;  2B8Y A;  5L6Y C;  1Y1V D;  2O6I A;  3I4N D;  5C4X D;  3MZG A;  4YQX A;  3L5X A;  4MHL A;  3SE4 B;  4A3F D;  5D58 A;  2JA6 D;  2L3Y A;  3UF5 A;  4XNJ A;  4JRE A;  3I4M D;  1Z7C A;  4GBZ A;  1CD9 A;  5D6K A;  1M4R A;  3HOZ D;  1YKB A;  2B90 A;  1Y6K L; 
#chains in the Genus database with same CATH homology
 3HHR A;  1AX8 A;  3DUH C;  4A93 D;  4GS7 A;  1HWG A;  1EKU A;  2B5I A;  3D85 C;  4O6K A;  1BGE A;  1M47 A;  2JA8 D;  1PGR A;  1V7M V;  1I1R B;  5D72 A;  5FHX A;  1PW6 A;  1IRL A;  4YPG C;  4A3D D;  1B5L A;  1PVH B;  2CYK A;  2Q7N B;  1M4B A;  1Y6M L;  1Z92 A;  1Y1W D;  1ETE A;  1IAR A;  3IRH A;  1LKI A;  2LMS A;  1D9G A;  1M4C A;  5KNH I;  3NCF A;  3HOU D;  1V7N V;  4RS1 A;  2INT A;  1ALU A;  1EXZ A;  4Z5R D;  4A3J D;  1CYL A;  1M48 A;  3DGC L;  4NI7 A;  1PY2 A;  3OQ3 A;  1NBP A;  2OQP A;  3PIV A;  3B5K A;  4DKE A;  1EER A;  4ZS7 A;  1HZI A;  1EVS A;  1CN4 C;  2E9W C;  2IL6 A;  4ZF7 A;  1M4A A;  1QVN A;  3HMX B;  1CNT 1;  4NN5 A;  3NCC A;  4BBR D;  1F6F A;  5LQB A;  2JA5 D;  1IJZ A;  2D48 A;  5TS9 A;  4A3K D;  1FG9 A;  2Q98 A;  1N1F A;  4DOH A;  1P9M B;  3INK C;  4LRL A;  1GA3 A;  4EXN A;  4A3C D;  4A3M D;  1RFB A;  1JLI A;  4NN7 A;  4O9H A;  2HYM B;  1HIK A;  5C3E D;  4NI9 A;  2L3O A;  1HUL A;  3EW3 A;  3OG6 A;  3QB1 A;  3UF2 A;  3PO2 D;  1ITI A;  3H3V E;  1ITL A;  1BGC A;  1RW5 A;  1BP3 A;  2ILK A;  1GNC A;  3DLQ I;  2R92 D;  1ITM A;  3VA2 A;  1ILK A;  3BPL A;  1RCB A;  1WU3 I;  1LK3 A;  3BPN A;  4X51 A;  5E4E A;  2JA7 D;  4DKD A;  4NN6 A;  5D70 A;  2R7Z D;  1CSG A;  1BGD A;  1IL6 A;  3QT2 C;  3UX9 A;  1BBN A;  3UEZ E;  4EXP A;  4J4L C;  2KZ1 A;  3HOX D;  3HOY D;  3LB6 A;  5D28 B;  3FKI D;  3HHC A;  3PO3 D;  2LAG A;  2ERJ D;  3BES L;  3L5W I;  2H24 A;  2B8Y A;  3D87 A;  3DI3 A;  3G6D A;  1M49 A;  2B8X A;  4NKQ C;  5L6Y C;  4A3G D;  1Y1V D;  1BCN A;  1FYH A;  2O27 A;  2O6I A;  3N06 A;  3Q1S I;  3G9V B;  4I77 Z;  3I4N D;  1Y14 A;  5IP7 D;  4A3E D;  2B63 D;  1F45 B;  1RHG A;  2XQB A;  3BPO A;  1WCM D;  5C4X D;  4CNI C;  3MZG A;  1BUY A;  5FLM D;  4FA8 E;  3TGX B;  1IK0 A;  4BXX D;  3NPZ A;  4YQX A;  1A7M A;  4PS4 A;  3L5X A;  3QWR B;  4MHL A;  4A3L D;  1ITF A;  3SE4 B;  1EMR A;  1HWH A;  1AXI A;  2GMF A;  5IYD D;  4BBS D;  1A22 A;  3H0G D;  1VLK A;  5FUC A;  1J7V L;  4NEM A;  4YUE C;  4A3F D;  3NCB A;  1KF9 A;  3HOV D;  2JA6 D;  3EJJ A;  3QAZ A;  2L3Y A;  3UF5 A;  5IYC D;  4BY1 D;  3LB6 B;  2PSM A;  5C44 D;  3S9D A;  1Y6N L;  3I4M D;  5D71 A;  2O26 A;  4NEJ A;  4A3B D;  1Z7C A;  4A3I D;  5D22 A;  2Q14 A;  3OG4 A;  3WCY I;  1HGU A;  4GRW A;  1CD9 A;  3QB7 A;  5IYB D;  1M4R A;  4WRL B;  5IP9 D;  3HOZ D;  1INR A;  1D9C A;  1AU1 A;  3PIW A;  1YKB A;  2VUM D;  1SCF A;  3D48 P;  3N0P A;  2D9Q A;  3HOW D;  3SE3 B;  2Z3R A;  4DKF A;  4BY7 D;  2B90 A;  2B8U A;  3DI2 A;  1LQS L;  2C35 A;  3NCE A;  2Z3Q A;  4DKC A;  5C7X A;  1HIJ A;  2B8Z A;  1HUW A;  4YDY I;  2R93 D;  1Y6K L;  2B91 A;  3AYH A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...