3B08B

Crystal structure of the mouse hoil1-l-nzf in complex with linear di-ubiquitin
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
58
structure length
58
Chain Sequence
MPVGWQCPGCTFINKPTRPGCEMCCRARPETYQIPASYQPDEEERARLAGEEEALRQY
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Signaling protein/metal binding protein
molecule keywords Polyubiquitin-C
publication title Specific recognition of linear ubiquitin chains by the Npl4 zinc finger (NZF) domain of the HOIL-1L subunit of the linear ubiquitin chain assembly complex
pubmed doi rcsb
source organism Homo sapiens
total genus 11
structure length 58
sequence length 58
chains with identical sequence E, H, K
ec nomenclature ec 2.3.2.31: RBR-type E3 ubiquitin transferase.
pdb deposition date 2011-06-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.140 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 3b08B00
3P2AA 3B0AB 2PPTA 2C6AA 2J9UB 2C6BA 4XXBB 3B08B
chains in the Genus database with same CATH superfamily
1IU6A 2JA5L 1RDVA 3PKIA 4A3EL 2NYDA 4ME3A 1PFUA 1PFYA 1H7VA 1R0GA 5EINC 2A69D 3WWNB 3IU3I 2V3BB 3H9CA 2E2HL 3GTOL 3GTKL 2PVXA 2NVQL 2C6AA 5K2ME 5JVG1 2A68D 3HOZL 3S2HL 3K7AL 2JA7L 3PO3L 5C4XL 3LPEB 1I50L 2XJUA 5DM71 4A3BL 4JADA 3RYGA 4C3JL 4BBSL 4AR6A 3HAXC 3QQCE 2NVXL 1TWHL 1SMWA 2Z3RB 3A44A 3KYWA 2XJSA 1BRFA 1T9QA 2RDVA 4JAGA 5M3FL 5GAHc 2XJQA 1DVBA 3H0GL 5AI2A 1IU5A 3B0AB 4A3ML 4TPUA 3PIP1 2KN9A 3HOUL 2V0EA 1K83L 2VL6A 2WB1P 5MFZA 4AHWA 3FDJA 3GTQL 5JVH1 3PWFA 4AHXA 4A3KL 4BBRL 5AI3A 3S14L 1RWDA 1B2OA 1YK4A 4G6BA 3VPBE 1WJVA 1Y1WL 1LKOA 2L0ZA 1BQ8A 2CKAA 3JR7A 1RB9A 3GTJL 3S1NL 3HOYL 4A3CL 2XJPA 4K9FA 3S17L 3WWLA 2AUSB 4AI3A 4BY1L 1TWAL 2JA8L 2PYAA 2K2DA 3LWQB 5H1Sc 3PO2L 4AI1A 2H12A 3P8BA 3S1QL 1VZIA 4AR5A 3GTGL 2XJVA 5IYDL 1VZGA 2Z3QB 4E6YA 1P7PA 5M5WL 3LNLA 3S16L 1BFYA 1T9PA 3KYYA 3H3VM 1NXEA 1LTLA 4AR3A 2AQCA 1R0JA 5C3EL 3LWPB 2Y0SP 3PZAA 2JI2A 4POFA 3H99A 1FHMA 1C09A 4A3FL 1PFWA 1IROA 2E2IL 2M6OA 1R0HA 4YWMA 5IP9L 3S2DL 3RZDL 4JAEA 2O5JD 3H97A 4U671 4XXBB 4X6AL 3S1ML 2APOB 2BE5D 1SMMA 3NFPI 1TWFL 1SFOL 4C3IL 2A6ED 4BXXL 4ZN1B 3I4NL 2HVYC 3MPSA 4A3IL 1R0IA 1S2ZA 2M6PA 2R7ZL 1T9OA 2M4VA 5MGNA 2R92L 3HJYB 1OWBA 2A6HD 3GTLL 2B63L 3PL5A 3CQZL 1ZRPA 1NXGA 2JI3A 1CAAA 5AN9H 3MSUA 1LKPA 3RZOL 4AR4A 1JYBA 2ERJA 3KYVA 2R93L 2EY4E 3HJWB 3RZ6A 7RXNA 5MF6A 4C2M1 2C6BA 1RDGA 1TWCL 4A93L 1OWCA 2PMZP 3B08B 4Y52L 4JAFA 5C44L 2MS3A 4A3DL 4BY7L 1E8JA 4Y7NL 1NNQA 4A3GL 1RYTA 2QL0A 1WCML 3S15L 5MFPA 2VUML 5GAGc 5M3ML 4AI0A 1YUZA 3MQKB 2ERSA 2WAQP 2YU9L 4TVMA 4XGHA 2GMGA 3KYXA 3ZG6A 3P2AA 3PIO1 1SMUA 1YK5A 1B13A 5GADc 4V196 1B2JA 4AHYA 4ZN3B 6RXNA 4GS7D 4AYBP 4YWLA 8RXNA 1IW7D 1BQ9A 2PVEA 5IYCL 5IYBL 1BE7A 3HOWL 1QQTA 1PZXA 3KYUA 3PKJA 1RYQA 4B8CD 3H9BA 2M4YA 3J7Y1 1VZHA 4A3LL 5GAEc 2ZIXA 5M5XL 4UY81 3M3YL 2KKDA 3LWVB 5RXNA 4QIWP 3GTPL 5FLML 3LWRB 2JA6L 1QCVA 2AYJA 2HR5A 3I4ML 3FKIL 1F4LA 2NVYL 5IY0A 1PFVA 3SS2A 5FJ8L 2JI1A 5M5YL 3RZTA 5IP7L 5DM61 3GTML 1YV1A 1Y1VL 1DX8A 2V0FA 1VCXA 3LWOB 1CADA 2NVTL 1S24A 4LHNA 5C4JL 2J9UB 2LCQA 3HKZP 4A3JL 1YUXA 4AHZA 2CR8A 1TWGL 1B71A 4LHLA 4AI2A 2B5ID 2PSMC 3S1RL 4RXNA 4POGA 3K35A 1QYBA 4WFN1 2DSXA 1S30A 2E2JL 1Z92B 2XJRA 1LKMA 2RFKB 1IRNA 1I3QL 3QVDA 2XJTA 3J7Z1 1I6HL 2PPTA 3HOXL 3HOVL 3M4OL 1R9TL 4C3HL 5EIOC 1FHHA 2CKCA 5MLC3 1R0FA 1ODHA
chains in the Genus database with same CATH topology
5MGNA 1IU6A 2XJPA 1RDVA 3KYUA 3PKIA 3PKJA 2NYDA 1RYQA 4B8CD 1OWBA 2A6HD 4K9FA 4ME3A 2M4YA 3WWLA 3J7Y1 4AI3A 1VZHA 1ZRPA 1H7VA 5GAEc 1NXGA 2PYAA 1R0GA 5EINC 2ZIXA 2A69D 3WWNB 3IU3I 2JI3A 2K2DA 2V3BB 1CAAA 5AN9H 4UY81 5H1Sc 3MSUA 4AI1A 2KKDA 5RXNA 2H12A 3P8BA 1LKPA 1QCVA 2PVXA 2C6AA 1JYBA 1VZIA 2AYJA 2ERJA 2HR5A 4AR4A 5K2ME 3KYVA 5JVG1 2A68D 4AR5A 3RZ6A 5IY0A 7RXNA 3LPEB 3SS2A 2XJVA 2XJUA 5MF6A 2JI1A 2C6BA 1VZGA 2Z3QB 3RZTA 1RDGA 5DM71 5DM61 4JADA 1ODHA 3RYGA 1YV1A 1OWCA 4E6YA 1DX8A 2V0FA 3LNLA 1BFYA 1VCXA 1T9PA 3KYYA 4AR6A 3QQCE 1NXEA 1CADA 1LTLA 3B08B 4AR3A 1S24A 1R0JA 4LHNA 1SMWA 4JAFA 3A44A 2J9UB 3KYWA 3PZAA 2LCQA 2XJSA 1BRFA 2MS3A 2JI2A 4POFA 1FHMA 1T9QA 1C09A 1E8JA 1YUXA 4AHZA 1IROA 2RDVA 4JAGA 1NNQA 2CR8A 1RYTA 2QL0A 2M6OA 1B71A 4LHLA 1R0HA 4AI2A 2B5ID 5GAHc 2PSMC 2XJQA 1DVBA 5AI2A 4YWMA 1IU5A 5MFPA 5GAGc 3B0AB 4TPUA 4AI0A 3PIP1 2KN9A 4RXNA 4POGA 2V0EA 1YUZA 2ERSA 2VL6A 5MFZA 3K35A 1QYBA 4WFN1 4TVMA 4XGHA 2GMGA 2DSXA 1S30A 4JAEA 4AHWA 2O5JD 4U671 4XXBB 3KYXA 3ZG6A 3P2AA 3PIO1 1SMUA 1YK5A 1Z92B 2XJRA 1B13A 1LKMA 2BE5D 1SMMA 3NFPI 1IRNA 5GADc 5JVH1 3QVDA 3PWFA 4AHXA 4V196 1B2JA 2XJTA 4AHYA 4ZN3B 5AI3A 6RXNA 1RWDA 4GS7D 1B2OA 1YK4A 2A6ED 4ZN1B 3J7Z1 4YWLA 4G6BA 8RXNA 2PPTA 3VPBE 1IW7D 1WJVA 3MPSA 1BQ9A 1LKOA 2PVEA 1S2ZA 2L0ZA 2M6PA 1BQ8A 1R0IA 1T9OA 1FHHA 5EIOC 2M4VA 2CKAA 2CKCA 1BE7A 1RB9A 5MLC3 1R0FA 2Z3RB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3P2A A;  3B0A B;  2PPT A;  2C6A A;  2J9U B;  2C6B A;  4XXB B;  3B08 B; 
#chains in the Genus database with same CATH topology
 1IU6 A;  2JA5 L;  1RDV A;  3PKI A;  4A3E L;  2NYD A;  4ME3 A;  1PFU A;  1PFY A;  1H7V A;  1R0G A;  5EIN C;  2A69 D;  3WWN B;  3IU3 I;  2V3B B;  3H9C A;  2E2H L;  3GTO L;  3GTK L;  2PVX A;  2NVQ L;  2C6A A;  5K2M E;  5JVG 1;  2A68 D;  3HOZ L;  3S2H L;  3K7A L;  2JA7 L;  3PO3 L;  5C4X L;  3LPE B;  1I50 L;  2XJU A;  5DM7 1;  4A3B L;  4JAD A;  3RYG A;  4C3J L;  4BBS L;  4AR6 A;  3HAX C;  3QQC E;  2NVX L;  1TWH L;  1SMW A;  2Z3R B;  3A44 A;  3KYW A;  2XJS A;  1BRF A;  1T9Q A;  2RDV A;  4JAG A;  5M3F L;  5GAH c;  2XJQ A;  1DVB A;  3H0G L;  5AI2 A;  1IU5 A;  3B0A B;  4A3M L;  4TPU A;  3PIP 1;  2KN9 A;  3HOU L;  2V0E A;  1K83 L;  2VL6 A;  2WB1 P;  5MFZ A;  4AHW A;  3FDJ A;  3GTQ L;  5JVH 1;  3PWF A;  4AHX A;  4A3K L;  4BBR L;  5AI3 A;  3S14 L;  1RWD A;  1B2O A;  1YK4 A;  4G6B A;  3VPB E;  1WJV A;  1Y1W L;  1LKO A;  2L0Z A;  1BQ8 A;  2CKA A;  3JR7 A;  1RB9 A;  3GTJ L;  3S1N L;  3HOY L;  4A3C L;  2XJP A;  4K9F A;  3S17 L;  3WWL A;  2AUS B;  4AI3 A;  4BY1 L;  1TWA L;  2JA8 L;  2PYA A;  2K2D A;  3LWQ B;  5H1S c;  3PO2 L;  4AI1 A;  2H12 A;  3P8B A;  3S1Q L;  1VZI A;  4AR5 A;  3GTG L;  2XJV A;  5IYD L;  1VZG A;  2Z3Q B;  4E6Y A;  1P7P A;  5M5W L;  3LNL A;  3S16 L;  1BFY A;  1T9P A;  3KYY A;  3H3V M;  1NXE A;  1LTL A;  4AR3 A;  2AQC A;  1R0J A;  5C3E L;  3LWP B;  2Y0S P;  3PZA A;  2JI2 A;  4POF A;  3H99 A;  1FHM A;  1C09 A;  4A3F L;  1PFW A;  1IRO A;  2E2I L;  2M6O A;  1R0H A;  4YWM A;  5IP9 L;  3S2D L;  3RZD L;  4JAE A;  2O5J D;  3H97 A;  4U67 1;  4XXB B;  4X6A L;  3S1M L;  2APO B;  2BE5 D;  1SMM A;  3NFP I;  1TWF L;  1SFO L;  4C3I L;  2A6E D;  4BXX L;  4ZN1 B;  3I4N L;  2HVY C;  3MPS A;  4A3I L;  1R0I A;  1S2Z A;  2M6P A;  2R7Z L;  1T9O A;  2M4V A;  5MGN A;  2R92 L;  3HJY B;  1OWB A;  2A6H D;  3GTL L;  2B63 L;  3PL5 A;  3CQZ L;  1ZRP A;  1NXG A;  2JI3 A;  1CAA A;  5AN9 H;  3MSU A;  1LKP A;  3RZO L;  4AR4 A;  1JYB A;  2ERJ A;  3KYV A;  2R93 L;  2EY4 E;  3HJW B;  3RZ6 A;  7RXN A;  5MF6 A;  4C2M 1;  2C6B A;  1RDG A;  1TWC L;  4A93 L;  1OWC A;  2PMZ P;  3B08 B;  4Y52 L;  4JAF A;  5C44 L;  2MS3 A;  4A3D L;  4BY7 L;  1E8J A;  4Y7N L;  1NNQ A;  4A3G L;  1RYT A;  2QL0 A;  1WCM L;  3S15 L;  5MFP A;  2VUM L;  5GAG c;  5M3M L;  4AI0 A;  1YUZ A;  3MQK B;  2ERS A;  2WAQ P;  2YU9 L;  4TVM A;  4XGH A;  2GMG A;  3KYX A;  3ZG6 A;  3P2A A;  3PIO 1;  1SMU A;  1YK5 A;  1B13 A;  5GAD c;  4V19 6;  1B2J A;  4AHY A;  4ZN3 B;  6RXN A;  4GS7 D;  4AYB P;  4YWL A;  8RXN A;  1IW7 D;  1BQ9 A;  2PVE A;  5IYC L;  5IYB L;  1BE7 A;  3HOW L;  1QQT A;  1PZX A;  3KYU A;  3PKJ A;  1RYQ A;  4B8C D;  3H9B A;  2M4Y A;  3J7Y 1;  1VZH A;  4A3L L;  5GAE c;  2ZIX A;  5M5X L;  4UY8 1;  3M3Y L;  2KKD A;  3LWV B;  5RXN A;  4QIW P;  3GTP L;  5FLM L;  3LWR B;  2JA6 L;  1QCV A;  2AYJ A;  2HR5 A;  3I4M L;  3FKI L;  1F4L A;  2NVY L;  5IY0 A;  1PFV A;  3SS2 A;  5FJ8 L;  2JI1 A;  5M5Y L;  3RZT A;  5IP7 L;  5DM6 1;  3GTM L;  1YV1 A;  1Y1V L;  1DX8 A;  2V0F A;  1VCX A;  3LWO B;  1CAD A;  2NVT L;  1S24 A;  4LHN A;  5C4J L;  2J9U B;  2LCQ A;  3HKZ P;  4A3J L;  1YUX A;  4AHZ A;  2CR8 A;  1TWG L;  1B71 A;  4LHL A;  4AI2 A;  2B5I D;  2PSM C;  3S1R L;  4RXN A;  4POG A;  3K35 A;  1QYB A;  4WFN 1;  2DSX A;  1S30 A;  2E2J L;  1Z92 B;  2XJR A;  1LKM A;  2RFK B;  1IRN A;  1I3Q L;  3QVD A;  2XJT A;  3J7Z 1;  1I6H L;  2PPT A;  3HOX L;  3HOV L;  3M4O L;  1R9T L;  4C3H L;  5EIO C;  1FHH A;  2CKC A;  5MLC 3;  1R0F A;  1ODH A; 
#chains in the Genus database with same CATH homology
 5MGN A;  1IU6 A;  2XJP A;  1RDV A;  3KYU A;  3PKI A;  3PKJ A;  2NYD A;  1RYQ A;  4B8C D;  1OWB A;  2A6H D;  4K9F A;  4ME3 A;  2M4Y A;  3WWL A;  3J7Y 1;  4AI3 A;  1VZH A;  1ZRP A;  1H7V A;  5GAE c;  1NXG A;  2PYA A;  1R0G A;  5EIN C;  2ZIX A;  2A69 D;  3WWN B;  3IU3 I;  2JI3 A;  2K2D A;  2V3B B;  1CAA A;  5AN9 H;  4UY8 1;  5H1S c;  3MSU A;  4AI1 A;  2KKD A;  5RXN A;  2H12 A;  3P8B A;  1LKP A;  1QCV A;  2PVX A;  2C6A A;  1JYB A;  1VZI A;  2AYJ A;  2ERJ A;  2HR5 A;  4AR4 A;  5K2M E;  3KYV A;  5JVG 1;  2A68 D;  4AR5 A;  3RZ6 A;  5IY0 A;  7RXN A;  3LPE B;  3SS2 A;  2XJV A;  2XJU A;  5MF6 A;  2JI1 A;  2C6B A;  1VZG A;  2Z3Q B;  3RZT A;  1RDG A;  5DM7 1;  5DM6 1;  4JAD A;  1ODH A;  3RYG A;  1YV1 A;  1OWC A;  4E6Y A;  1DX8 A;  2V0F A;  3LNL A;  1BFY A;  1VCX A;  1T9P A;  3KYY A;  4AR6 A;  3QQC E;  1NXE A;  1CAD A;  1LTL A;  3B08 B;  4AR3 A;  1S24 A;  1R0J A;  4LHN A;  1SMW A;  4JAF A;  3A44 A;  2J9U B;  3KYW A;  3PZA A;  2LCQ A;  2XJS A;  1BRF A;  2MS3 A;  2JI2 A;  4POF A;  1FHM A;  1T9Q A;  1C09 A;  1E8J A;  1YUX A;  4AHZ A;  1IRO A;  2RDV A;  4JAG A;  1NNQ A;  2CR8 A;  1RYT A;  2QL0 A;  2M6O A;  1B71 A;  4LHL A;  1R0H A;  4AI2 A;  2B5I D;  5GAH c;  2PSM C;  2XJQ A;  1DVB A;  5AI2 A;  4YWM A;  1IU5 A;  5MFP A;  5GAG c;  3B0A B;  4TPU A;  4AI0 A;  3PIP 1;  2KN9 A;  4RXN A;  4POG A;  2V0E A;  1YUZ A;  2ERS A;  2VL6 A;  5MFZ A;  3K35 A;  1QYB A;  4WFN 1;  4TVM A;  4XGH A;  2GMG A;  2DSX A;  1S30 A;  4JAE A;  4AHW A;  2O5J D;  4U67 1;  4XXB B;  3KYX A;  3ZG6 A;  3P2A A;  3PIO 1;  1SMU A;  1YK5 A;  1Z92 B;  2XJR A;  1B13 A;  1LKM A;  2BE5 D;  1SMM A;  3NFP I;  1IRN A;  5GAD c;  5JVH 1;  3QVD A;  3PWF A;  4AHX A;  4V19 6;  1B2J A;  2XJT A;  4AHY A;  4ZN3 B;  5AI3 A;  6RXN A;  1RWD A;  4GS7 D;  1B2O A;  1YK4 A;  2A6E D;  4ZN1 B;  3J7Z 1;  4YWL A;  4G6B A;  8RXN A;  2PPT A;  3VPB E;  1IW7 D;  1WJV A;  3MPS A;  1BQ9 A;  1LKO A;  2PVE A;  1S2Z A;  2L0Z A;  2M6P A;  1BQ8 A;  1R0I A;  1T9O A;  1FHH A;  5EIO C;  2M4V A;  2CKA A;  2CKC A;  1BE7 A;  1RB9 A;  5MLC 3;  1R0F A;  2Z3R B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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