3B5QA

Crystal structure of a putative sulfatase (np_810509.1) from bacteroides thetaiotaomicron vpi-5482 at 2.40 a resolution
Total Genus 165
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
165
Knots found
sequence length
464
structure length
464
Chain Sequence
b'EKPNFLIIQCDHLTQRVVGAYGQTQGCTLPIDEVASRGVIFSNAYVGCPLSQPSRAALWSGMMPHQTNVRSNSSEPVNTRLPENVPTLGSLFSESGYEAVHFGKTHDMGSLRGFKHKEPVAKPFTDPEFPVNNDSFLDVGTCEDAVAYLSNPPKEPFICIADFQNPHNICGFIGENAGVHTDRPISGPLPELPDNFDVEDWSNIPTPVQYICCSHRRMTQAAHWNEENYRHYIAAFQHYTKMVSKQVDSVLKALYSTPAGRNTIVVIMADHGDGMASHRMVTKHISFYDEMTNVPFIFAGPGIKQQKKPVDHLLTQPTLDLLPTLCDLAGIAVPAEKAGISLAPTLRGEKQKKSHPYVVSEWHSEYEYVTTPGRMVRGPRYKYTHYLEGNGEELYDMKKDPGERKNLAKDPKYSKILAEHRALLDDYITRSKDDYRSLKVDADPRCRNHTPGYPSHEGPGAREI'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Putative sulfatase yidJ
publication title Crystal structure of a putative sulfatase (NP_810509.1) from Bacteroides thetaiotaomicron VPI-5482 at 2.40 A resolution
rcsb
source organism Bacteroides thetaiotaomicron vpi-5482
molecule tags Hydrolase
total genus 165
structure length 464
sequence length 464
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2007-10-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
A PF16347 DUF4976 Domain of unknown function (DUF4976)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3b5qA00
2GLQA 4UPLA 2G9YA 1KHLA 4LR9A 3TG0A 4QAXA 1AJBA 3T00A 4CXSA 5HRTA 3IGZB 5DLTA 4LREA 3BDHA 1AUKA 2W5VA 5C66A 3LXQA 4CYRA 3MK1A 2ANHA 3NKNA 4CXUA 1HJKA 1Y6VA 2GSNA 5IJQA 1SHQA 1ELZA 3MK2A 2VQRA 1EW8A 1EW2A 2GSUA 1ALIA 2GA3A 3IGYB 4UOPA 2W5RA 3B5QA 3TX0A 1EW9A 2XR9A 1KH7A 5AJ9A 2IUCA 4LR8A 2W5XA 3NKMA 5GRRA 1AJCA 1ELXA 1N2KA 1ALKA 3CMRA 5TJ3A 4CXKA 4MY4A 1ANJA 2W5WA 4KAVA 4ZG9A 3WAVA 4ZG6A 1ED8A 4ZG7A 1ALJA 4LR7A 3IDDA 1B8JA 3WAYA 3DYCA 1E2SP 3M8WA 1KH5A 4GTXA 2RH6A 1N2LA 2ZKTA 3MK0A 2W8DA 3Q3QA 3WAXA 1URAA 4NWJA 1Y7AA 1AJAA 3E2DA 1O98A 3A52A 3SZZA 4GTWA 4KJGA 3KD8A 5LQQA 4GTZA 4UOOA 4LQYA 1E1ZP 1ALHA 5LIAA 1HDHA 4YR1A 1AJDA 4UPHA 1KH9A 2GSOA 3M8YA 1URBA 1ZEDA 4UPKA 1KHKA 4LRBA 3ED4A 1ANIA 3NKQA 2W5SA 1HQAA 3NKPA 1ZEFA 1EQJA 4MHXA 3BDGA 1EJJA 4LRCA 3WAWA 2IUCB 3NKRA 4LRFA 1ELYA 2XRGA 4ZGAA 4B56A 4MIVA 5INHA 1E33P 4FDIA 3T02A 1KHJA 1KH4A 2IFYA 4KM4A 4LRDA 1E3CP 3T01A 3TWZA 5EGHA 1EI6A 3BDGB 3SZYA 4FDJA 3NVLA 5EGEA 1K7HA 3UNYA 3M8ZA 2W5TA 5LRNA 2W5QA 4NWXA 1SHNA 3BDFA 4CYSA 3WBHA 5K4PA 3M7VA 2X98A 5KXAA 5L0BA 1P49A 4LRAA 3UO0A 4N7TA 5L0EA 5GOVA 3OT9A 1ZEBA 2D1GA 4LR2A 5DLWA 5L0KA 5LRMA 3UN5A 5DLVA 5IJSA 4GTYA 4KJDA 3UN3A 4UPIA 3NKOA 4KAYA 2QZUA 1ED9A 4TN0A 1KHNA 4UORA 1O99A 1FSUA 3DPCA 2W8SA 3UN2A
chains in the Genus database with same CATH superfamily
2GLQA 4UPLA 2G9YA 1KHLA 4LR9A 3TG0A 4QAXA 1AJBA 3T00A 4CXSA 5HRTA 3IGZB 5DLTA 4LREA 3BDHA 1AUKA 2W5VA 5C66A 3LXQA 4CYRA 3MK1A 2ANHA 3NKNA 4CXUA 1HJKA 1Y6VA 2GSNA 5IJQA 1SHQA 1ELZA 3MK2A 2VQRA 1EW8A 1EW2A 2GSUA 1ALIA 2GA3A 3IGYB 4UOPA 2W5RA 3B5QA 3TX0A 1EW9A 2XR9A 1KH7A 5AJ9A 2IUCA 4LR8A 2W5XA 3NKMA 5GRRA 1AJCA 1ELXA 1N2KA 1ALKA 3CMRA 5TJ3A 4CXKA 4MY4A 1ANJA 2W5WA 4KAVA 4ZG9A 3WAVA 4ZG6A 1ED8A 4ZG7A 1ALJA 4LR7A 3IDDA 1B8JA 3WAYA 3DYCA 1E2SP 3M8WA 1KH5A 4GTXA 2RH6A 1N2LA 2ZKTA 3MK0A 2W8DA 3Q3QA 3WAXA 1URAA 4NWJA 1Y7AA 1AJAA 3E2DA 1O98A 3A52A 3SZZA 4GTWA 4KJGA 3KD8A 5LQQA 4GTZA 4UOOA 4LQYA 1E1ZP 1ALHA 5LIAA 1HDHA 4YR1A 1AJDA 4UPHA 1KH9A 2GSOA 3M8YA 1URBA 1ZEDA 4UPKA 1KHKA 4LRBA 3ED4A 1ANIA 3NKQA 2W5SA 1HQAA 3NKPA 1ZEFA 1EQJA 4MHXA 3BDGA 1EJJA 4LRCA 3WAWA 2IUCB 3NKRA 4LRFA 1ELYA 2XRGA 4ZGAA 4B56A 4MIVA 5INHA 1E33P 4FDIA 3T02A 1KHJA 1KH4A 2IFYA 4KM4A 4LRDA 1E3CP 3T01A 3TWZA 5EGHA 1EI6A 3BDGB 3SZYA 4FDJA 3NVLA 5EGEA 1K7HA 3UNYA 3M8ZA 2W5TA 5LRNA 2W5QA 4NWXA 1SHNA 3BDFA 4CYSA 3WBHA 5K4PA 3M7VA 2X98A 5KXAA 5L0BA 1P49A 4LRAA 3UO0A 4N7TA 5L0EA 5GOVA 3OT9A 1ZEBA 2D1GA 4LR2A 5DLWA 5L0KA 5LRMA 3UN5A 5DLVA 5IJSA 4GTYA 4KJDA 3UN3A 4UPIA 3NKOA 4KAYA 2QZUA 1ED9A 4TN0A 1KHNA 4UORA 1O99A 1FSUA 3DPCA 2W8SA 3UN2A
chains in the Genus database with same CATH topology
2GLQA 4UPLA 2G9YA 1KHLA 4LR9A 3TG0A 4QAXA 1AJBA 3T00A 4CXSA 5HRTA 3IGZB 5DLTA 4LREA 3BDHA 1AUKA 2W5VA 5C66A 3LXQA 4CYRA 3MK1A 2ANHA 3NKNA 4CXUA 1HJKA 1Y6VA 2GSNA 5IJQA 1SHQA 1ELZA 3MK2A 2VQRA 1EW8A 1EW2A 2GSUA 1ALIA 2GA3A 3IGYB 4UOPA 2W5RA 3B5QA 3TX0A 1EW9A 2XR9A 1KH7A 5AJ9A 2IUCA 4LR8A 2W5XA 3NKMA 5GRRA 1AJCA 1ELXA 1N2KA 1ALKA 3CMRA 5TJ3A 4CXKA 4MY4A 1ANJA 2W5WA 4KAVA 4ZG9A 3WAVA 4ZG6A 1ED8A 4ZG7A 1ALJA 4LR7A 3IDDA 1B8JA 3WAYA 3DYCA 1E2SP 3M8WA 1KH5A 4GTXA 2RH6A 1N2LA 2ZKTA 3MK0A 2W8DA 3Q3QA 3WAXA 1URAA 4NWJA 1Y7AA 1AJAA 3E2DA 1O98A 3A52A 3SZZA 4GTWA 4KJGA 3KD8A 5LQQA 4GTZA 4UOOA 4LQYA 1E1ZP 1ALHA 5LIAA 1HDHA 4YR1A 1AJDA 4UPHA 1KH9A 2GSOA 3M8YA 1URBA 1ZEDA 4UPKA 1KHKA 4LRBA 3ED4A 1ANIA 3NKQA 2W5SA 1HQAA 3NKPA 1ZEFA 1EQJA 4MHXA 3BDGA 1EJJA 4LRCA 3WAWA 2IUCB 3NKRA 4LRFA 1ELYA 2XRGA 4ZGAA 4B56A 4MIVA 5INHA 1E33P 4FDIA 3T02A 1KHJA 1KH4A 2IFYA 4KM4A 4LRDA 1E3CP 3T01A 3TWZA 5EGHA 1EI6A 3BDGB 3SZYA 4FDJA 3NVLA 5EGEA 1K7HA 3UNYA 3M8ZA 2W5TA 5LRNA 2W5QA 4NWXA 1SHNA 3BDFA 4CYSA 3WBHA 5K4PA 3M7VA 2X98A 5KXAA 5L0BA 1P49A 4LRAA 3UO0A 4N7TA 5L0EA 5GOVA 3OT9A 1ZEBA 2D1GA 4LR2A 5DLWA 5L0KA 5LRMA 3UN5A 5DLVA 5IJSA 4GTYA 4KJDA 3UN3A 4UPIA 3NKOA 4KAYA 2QZUA 1ED9A 4TN0A 1KHNA 4UORA 1O99A 1FSUA 3DPCA 2W8SA 3UN2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GLQ A;  4UPL A;  2G9Y A;  1KHL A;  4LR9 A;  3TG0 A;  4QAX A;  1AJB A;  3T00 A;  4CXS A;  5HRT A;  3IGZ B;  5DLT A;  4LRE A;  3BDH A;  1AUK A;  2W5V A;  5C66 A;  3LXQ A;  4CYR A;  3MK1 A;  2ANH A;  3NKN A;  4CXU A;  1HJK A;  1Y6V A;  2GSN A;  5IJQ A;  1SHQ A;  1ELZ A;  3MK2 A;  2VQR A;  1EW8 A;  1EW2 A;  2GSU A;  1ALI A;  2GA3 A;  3IGY B;  4UOP A;  2W5R A;  3B5Q A;  3TX0 A;  1EW9 A;  2XR9 A;  1KH7 A;  5AJ9 A;  2IUC A;  4LR8 A;  2W5X A;  3NKM A;  5GRR A;  1AJC A;  1ELX A;  1N2K A;  1ALK A;  3CMR A;  5TJ3 A;  4CXK A;  4MY4 A;  1ANJ A;  2W5W A;  4KAV A;  4ZG9 A;  3WAV A;  4ZG6 A;  1ED8 A;  4ZG7 A;  1ALJ A;  4LR7 A;  3IDD A;  1B8J A;  3WAY A;  3DYC A;  1E2S P;  3M8W A;  1KH5 A;  4GTX A;  2RH6 A;  1N2L A;  2ZKT A;  3MK0 A;  2W8D A;  3Q3Q A;  3WAX A;  1URA A;  4NWJ A;  1Y7A A;  1AJA A;  3E2D A;  1O98 A;  3A52 A;  3SZZ A;  4GTW A;  4KJG A;  3KD8 A;  5LQQ A;  4GTZ A;  4UOO A;  4LQY A;  1E1Z P;  1ALH A;  5LIA A;  1HDH A;  4YR1 A;  1AJD A;  4UPH A;  1KH9 A;  2GSO A;  3M8Y A;  1URB A;  1ZED A;  4UPK A;  1KHK A;  4LRB A;  3ED4 A;  1ANI A;  3NKQ A;  2W5S A;  1HQA A;  3NKP A;  1ZEF A;  1EQJ A;  4MHX A;  3BDG A;  1EJJ A;  4LRC A;  3WAW A;  2IUC B;  3NKR A;  4LRF A;  1ELY A;  2XRG A;  4ZGA A;  4B56 A;  4MIV A;  5INH A;  1E33 P;  4FDI A;  3T02 A;  1KHJ A;  1KH4 A;  2IFY A;  4KM4 A;  4LRD A;  1E3C P;  3T01 A;  3TWZ A;  5EGH A;  1EI6 A;  3BDG B;  3SZY A;  4FDJ A;  3NVL A;  5EGE A;  1K7H A;  3UNY A;  3M8Z A;  2W5T A;  5LRN A;  2W5Q A;  4NWX A;  1SHN A;  3BDF A;  4CYS A;  3WBH A;  5K4P A;  3M7V A;  2X98 A;  5KXA A;  5L0B A;  1P49 A;  4LRA A;  3UO0 A;  4N7T A;  5L0E A;  5GOV A;  3OT9 A;  1ZEB A;  2D1G A;  4LR2 A;  5DLW A;  5L0K A;  5LRM A;  3UN5 A;  5DLV A;  5IJS A;  4GTY A;  4KJD A;  3UN3 A;  4UPI A;  3NKO A;  4KAY A;  2QZU A;  1ED9 A;  4TN0 A;  1KHN A;  4UOR A;  1O99 A;  1FSU A;  3DPC A;  2W8S A;  3UN2 A; 
#chains in the Genus database with same CATH topology
 2GLQ A;  4UPL A;  2G9Y A;  1KHL A;  4LR9 A;  3TG0 A;  4QAX A;  1AJB A;  3T00 A;  4CXS A;  5HRT A;  3IGZ B;  5DLT A;  4LRE A;  3BDH A;  1AUK A;  2W5V A;  5C66 A;  3LXQ A;  4CYR A;  3MK1 A;  2ANH A;  3NKN A;  4CXU A;  1HJK A;  1Y6V A;  2GSN A;  5IJQ A;  1SHQ A;  1ELZ A;  3MK2 A;  2VQR A;  1EW8 A;  1EW2 A;  2GSU A;  1ALI A;  2GA3 A;  3IGY B;  4UOP A;  2W5R A;  3B5Q A;  3TX0 A;  1EW9 A;  2XR9 A;  1KH7 A;  5AJ9 A;  2IUC A;  4LR8 A;  2W5X A;  3NKM A;  5GRR A;  1AJC A;  1ELX A;  1N2K A;  1ALK A;  3CMR A;  5TJ3 A;  4CXK A;  4MY4 A;  1ANJ A;  2W5W A;  4KAV A;  4ZG9 A;  3WAV A;  4ZG6 A;  1ED8 A;  4ZG7 A;  1ALJ A;  4LR7 A;  3IDD A;  1B8J A;  3WAY A;  3DYC A;  1E2S P;  3M8W A;  1KH5 A;  4GTX A;  2RH6 A;  1N2L A;  2ZKT A;  3MK0 A;  2W8D A;  3Q3Q A;  3WAX A;  1URA A;  4NWJ A;  1Y7A A;  1AJA A;  3E2D A;  1O98 A;  3A52 A;  3SZZ A;  4GTW A;  4KJG A;  3KD8 A;  5LQQ A;  4GTZ A;  4UOO A;  4LQY A;  1E1Z P;  1ALH A;  5LIA A;  1HDH A;  4YR1 A;  1AJD A;  4UPH A;  1KH9 A;  2GSO A;  3M8Y A;  1URB A;  1ZED A;  4UPK A;  1KHK A;  4LRB A;  3ED4 A;  1ANI A;  3NKQ A;  2W5S A;  1HQA A;  3NKP A;  1ZEF A;  1EQJ A;  4MHX A;  3BDG A;  1EJJ A;  4LRC A;  3WAW A;  2IUC B;  3NKR A;  4LRF A;  1ELY A;  2XRG A;  4ZGA A;  4B56 A;  4MIV A;  5INH A;  1E33 P;  4FDI A;  3T02 A;  1KHJ A;  1KH4 A;  2IFY A;  4KM4 A;  4LRD A;  1E3C P;  3T01 A;  3TWZ A;  5EGH A;  1EI6 A;  3BDG B;  3SZY A;  4FDJ A;  3NVL A;  5EGE A;  1K7H A;  3UNY A;  3M8Z A;  2W5T A;  5LRN A;  2W5Q A;  4NWX A;  1SHN A;  3BDF A;  4CYS A;  3WBH A;  5K4P A;  3M7V A;  2X98 A;  5KXA A;  5L0B A;  1P49 A;  4LRA A;  3UO0 A;  4N7T A;  5L0E A;  5GOV A;  3OT9 A;  1ZEB A;  2D1G A;  4LR2 A;  5DLW A;  5L0K A;  5LRM A;  3UN5 A;  5DLV A;  5IJS A;  4GTY A;  4KJD A;  3UN3 A;  4UPI A;  3NKO A;  4KAY A;  2QZU A;  1ED9 A;  4TN0 A;  1KHN A;  4UOR A;  1O99 A;  1FSU A;  3DPC A;  2W8S A;  3UN2 A; 
#chains in the Genus database with same CATH homology
 2GLQ A;  4UPL A;  2G9Y A;  1KHL A;  4LR9 A;  3TG0 A;  4QAX A;  1AJB A;  3T00 A;  4CXS A;  5HRT A;  3IGZ B;  5DLT A;  4LRE A;  3BDH A;  1AUK A;  2W5V A;  5C66 A;  3LXQ A;  4CYR A;  3MK1 A;  2ANH A;  3NKN A;  4CXU A;  1HJK A;  1Y6V A;  2GSN A;  5IJQ A;  1SHQ A;  1ELZ A;  3MK2 A;  2VQR A;  1EW8 A;  1EW2 A;  2GSU A;  1ALI A;  2GA3 A;  3IGY B;  4UOP A;  2W5R A;  3B5Q A;  3TX0 A;  1EW9 A;  2XR9 A;  1KH7 A;  5AJ9 A;  2IUC A;  4LR8 A;  2W5X A;  3NKM A;  5GRR A;  1AJC A;  1ELX A;  1N2K A;  1ALK A;  3CMR A;  5TJ3 A;  4CXK A;  4MY4 A;  1ANJ A;  2W5W A;  4KAV A;  4ZG9 A;  3WAV A;  4ZG6 A;  1ED8 A;  4ZG7 A;  1ALJ A;  4LR7 A;  3IDD A;  1B8J A;  3WAY A;  3DYC A;  1E2S P;  3M8W A;  1KH5 A;  4GTX A;  2RH6 A;  1N2L A;  2ZKT A;  3MK0 A;  2W8D A;  3Q3Q A;  3WAX A;  1URA A;  4NWJ A;  1Y7A A;  1AJA A;  3E2D A;  1O98 A;  3A52 A;  3SZZ A;  4GTW A;  4KJG A;  3KD8 A;  5LQQ A;  4GTZ A;  4UOO A;  4LQY A;  1E1Z P;  1ALH A;  5LIA A;  1HDH A;  4YR1 A;  1AJD A;  4UPH A;  1KH9 A;  2GSO A;  3M8Y A;  1URB A;  1ZED A;  4UPK A;  1KHK A;  4LRB A;  3ED4 A;  1ANI A;  3NKQ A;  2W5S A;  1HQA A;  3NKP A;  1ZEF A;  1EQJ A;  4MHX A;  3BDG A;  1EJJ A;  4LRC A;  3WAW A;  2IUC B;  3NKR A;  4LRF A;  1ELY A;  2XRG A;  4ZGA A;  4B56 A;  4MIV A;  5INH A;  1E33 P;  4FDI A;  3T02 A;  1KHJ A;  1KH4 A;  2IFY A;  4KM4 A;  4LRD A;  1E3C P;  3T01 A;  3TWZ A;  5EGH A;  1EI6 A;  3BDG B;  3SZY A;  4FDJ A;  3NVL A;  5EGE A;  1K7H A;  3UNY A;  3M8Z A;  2W5T A;  5LRN A;  2W5Q A;  4NWX A;  1SHN A;  3BDF A;  4CYS A;  3WBH A;  5K4P A;  3M7V A;  2X98 A;  5KXA A;  5L0B A;  1P49 A;  4LRA A;  3UO0 A;  4N7T A;  5L0E A;  5GOV A;  3OT9 A;  1ZEB A;  2D1G A;  4LR2 A;  5DLW A;  5L0K A;  5LRM A;  3UN5 A;  5DLV A;  5IJS A;  4GTY A;  4KJD A;  3UN3 A;  4UPI A;  3NKO A;  4KAY A;  2QZU A;  1ED9 A;  4TN0 A;  1KHN A;  4UOR A;  1O99 A;  1FSU A;  3DPC A;  2W8S A;  3UN2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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