3B5QA

Crystal structure of a putative sulfatase (np_810509.1) from bacteroides thetaiotaomicron vpi-5482 at 2.40 a resolution
Total Genus 165
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
165
Knots found
sequence length
464
structure length
464
Chain Sequence
EKPNFLIIQCDHLTQRVVGAYGQTQGCTLPIDEVASRGVIFSNAYVGCPLSQPSRAALWSGMMPHQTNVRSNSSEPVNTRLPENVPTLGSLFSESGYEAVHFGKTHDMGSLRGFKHKEPVAKPFTDPEFPVNNDSFLDVGTCEDAVAYLSNPPKEPFICIADFQNPHNICGFIGENAGVHTDRPISGPLPELPDNFDVEDWSNIPTPVQYICCSHRRMTQAAHWNEENYRHYIAAFQHYTKMVSKQVDSVLKALYSTPAGRNTIVVIMADHGDGMASHRMVTKHISFYDEMTNVPFIFAGPGIKQQKKPVDHLLTQPTLDLLPTLCDLAGIAVPAEKAGISLAPTLRGEKQKKSHPYVVSEWHSEYEYVTTPGRMVRGPRYKYTHYLEGNGEELYDMKKDPGERKNLAKDPKYSKILAEHRALLDDYITRSKDDYRSLKVDADPRCRNHTPGYPSHEGPGAREI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of a putative sulfatase (NP_810509.1) from Bacteroides thetaiotaomicron VPI-5482 at 2.40 A resolution
rcsb
source organism Bacteroides thetaiotaomicron vpi-5482
molecule tags Hydrolase
molecule keywords Putative sulfatase yidJ
total genus 165
structure length 464
sequence length 464
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2007-10-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
A PF16347 DUF4976 Domain of unknown function (DUF4976)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3b5qA00
3UN2A 3BDGB 2W5VA 1ZEDA 1SHNA 4ZGAA 3T00A 2GSOA 3Q3QA 4KJGA 1ZEBA 2GA3A 4LRBA 2D1GA 3IDDA 2IUCB 3UO0A 1E2SP 5C66A 5INHA 1ALKA 3ED4A 5IJQA 1ELYA 4GTZA 1ALJA 1E1ZP 2ANHA 4MHXA 1P49A 4LR9A 1HJKA 3TG0A 1Y7AA 3M8ZA 3WBHA 5AJ9A 4CXUA 1EI6A 4GTWA 1O98A 5IJSA 2W5XA 1HDHA 1B8JA 5K4PA 2IUCA 2XR9A 3SZYA 4UPLA 1AJBA 1ED8A 1KH7A 1N2LA 3NKMA 4NWJA 1ED9A 2W5WA 3DPCA 3NKOA 5L0EA 1E33P 4LQYA 4LR8A 4UPKA 3WAXA 4LREA 1AJAA 4ZG6A 4ZG7A 4B56A 5L0KA 2W8DA 3MK0A 5LRNA 3E2DA 1URBA 1KH4A 1EQJA 5TJ3A 3WAWA 4FDJA 1SHQA 4KM4A 4QAXA 4CYRA 2W5TA 3UN5A 4UPIA 2IFYA 3M8WA 1ALHA 2W5RA 1EW9A 1E3CP 5KXAA 4LR2A 4CXSA 1O99A 4LRAA 2ZKTA 3NKQA 2W8SA 3DYCA 4FDIA 3A52A 3M8YA 1AJDA 3BDFA 5EGHA 5EGEA 3TWZA 1KHJA 2W5SA 4MIVA 5GRRA 1KH9A 3B5QA 2X98A 1KHKA 2XRGA 2RH6A 5DLVA 4UOPA 1ELXA 1EW8A 2GLQA 3NKNA 1KHLA 3CMRA 4YR1A 1AUKA 3T01A 4LRDA 4MY4A 5DLWA 1EJJA 2W5QA 4KJDA 1AJCA 4LR7A 5GOVA 3UNYA 1EW2A 1KH5A 3MK2A 5DLTA 1K7HA 3MK1A 3M7VA 4CYSA 4GTXA 5HRTA 5LIAA 5L0BA 4ZG9A 3SZZA 1ANJA 1ZEFA 3IGYB 2GSNA 3NKRA 1Y6VA 1ELZA 1ALIA 3BDHA 3OT9A 1URAA 4KAVA 4N7TA 3NKPA 4TN0A 4GTYA 2QZUA 3T02A 3IGZB 5LQQA 3WAVA 4CXKA 1ANIA 4UORA 2G9YA 3KD8A 4LRFA 2VQRA 3NVLA 3TX0A 1FSUA 1HQAA 3BDGA 4UPHA 4NWXA 3UN3A 1N2KA 4LRCA 1KHNA 3WAYA 2GSUA 3LXQA 5LRMA 4KAYA 4UOOA
chains in the Genus database with same CATH superfamily
3UN2A 3BDGB 2W5VA 1ZEDA 1SHNA 4ZGAA 3T00A 2GSOA 3Q3QA 4KJGA 1ZEBA 2GA3A 4LRBA 2D1GA 3IDDA 2IUCB 3UO0A 1E2SP 5C66A 5INHA 1ALKA 3ED4A 5IJQA 1ELYA 4GTZA 1ALJA 1E1ZP 2ANHA 4MHXA 1P49A 4LR9A 1HJKA 3TG0A 1Y7AA 3M8ZA 3WBHA 5AJ9A 4CXUA 1EI6A 4GTWA 1O98A 5IJSA 2W5XA 1HDHA 1B8JA 5K4PA 2IUCA 2XR9A 3SZYA 4UPLA 1AJBA 1ED8A 1KH7A 1N2LA 3NKMA 4NWJA 1ED9A 2W5WA 3DPCA 3NKOA 5L0EA 1E33P 4LQYA 4LR8A 4UPKA 3WAXA 4LREA 1AJAA 4ZG6A 4ZG7A 4B56A 5L0KA 2W8DA 3MK0A 5LRNA 3E2DA 1URBA 1KH4A 1EQJA 5TJ3A 3WAWA 4FDJA 1SHQA 4KM4A 4QAXA 4CYRA 2W5TA 3UN5A 4UPIA 2IFYA 3M8WA 1ALHA 2W5RA 1EW9A 1E3CP 5KXAA 4LR2A 4CXSA 1O99A 4LRAA 2ZKTA 3NKQA 2W8SA 3DYCA 4FDIA 3A52A 3M8YA 1AJDA 3BDFA 5EGHA 5EGEA 3TWZA 1KHJA 2W5SA 4MIVA 5GRRA 1KH9A 3B5QA 2X98A 1KHKA 2XRGA 2RH6A 5DLVA 4UOPA 1ELXA 1EW8A 2GLQA 3NKNA 1KHLA 3CMRA 4YR1A 1AUKA 3T01A 4LRDA 4MY4A 5DLWA 1EJJA 2W5QA 4KJDA 1AJCA 4LR7A 5GOVA 3UNYA 1EW2A 1KH5A 3MK2A 5DLTA 1K7HA 3MK1A 3M7VA 4CYSA 4GTXA 5HRTA 5LIAA 5L0BA 4ZG9A 3SZZA 1ANJA 1ZEFA 3IGYB 2GSNA 3NKRA 1Y6VA 1ELZA 1ALIA 3BDHA 3OT9A 1URAA 4KAVA 4N7TA 3NKPA 4TN0A 4GTYA 2QZUA 3T02A 3IGZB 5LQQA 3WAVA 4CXKA 1ANIA 4UORA 2G9YA 3KD8A 4LRFA 2VQRA 3NVLA 3TX0A 1FSUA 1HQAA 3BDGA 4UPHA 4NWXA 3UN3A 1N2KA 4LRCA 1KHNA 3WAYA 2GSUA 3LXQA 5LRMA 4KAYA 4UOOA
chains in the Genus database with same CATH topology
3UN2A 3BDGB 2W5VA 1ZEDA 1SHNA 4ZGAA 3T00A 2GSOA 3Q3QA 4KJGA 1ZEBA 2GA3A 4LRBA 2D1GA 3IDDA 2IUCB 3UO0A 1E2SP 5C66A 5INHA 1ALKA 3ED4A 5IJQA 1ELYA 4GTZA 1ALJA 1E1ZP 2ANHA 4MHXA 1P49A 4LR9A 1HJKA 3TG0A 1Y7AA 3M8ZA 3WBHA 5AJ9A 4CXUA 1EI6A 4GTWA 1O98A 5IJSA 2W5XA 1HDHA 1B8JA 5K4PA 2IUCA 2XR9A 3SZYA 4UPLA 1AJBA 1ED8A 1KH7A 1N2LA 3NKMA 4NWJA 1ED9A 2W5WA 3DPCA 3NKOA 5L0EA 1E33P 4LQYA 4LR8A 4UPKA 3WAXA 4LREA 1AJAA 4ZG6A 4ZG7A 4B56A 5L0KA 2W8DA 3MK0A 5LRNA 3E2DA 1URBA 1KH4A 1EQJA 5TJ3A 3WAWA 4FDJA 1SHQA 4KM4A 4QAXA 4CYRA 2W5TA 3UN5A 4UPIA 2IFYA 3M8WA 1ALHA 2W5RA 1EW9A 1E3CP 5KXAA 4LR2A 4CXSA 1O99A 4LRAA 2ZKTA 3NKQA 2W8SA 3DYCA 4FDIA 3A52A 3M8YA 1AJDA 3BDFA 5EGHA 5EGEA 3TWZA 1KHJA 2W5SA 4MIVA 5GRRA 1KH9A 3B5QA 2X98A 1KHKA 2XRGA 2RH6A 5DLVA 4UOPA 1ELXA 1EW8A 2GLQA 3NKNA 1KHLA 3CMRA 4YR1A 1AUKA 3T01A 4LRDA 4MY4A 5DLWA 1EJJA 2W5QA 4KJDA 1AJCA 4LR7A 5GOVA 3UNYA 1EW2A 1KH5A 3MK2A 5DLTA 1K7HA 3MK1A 3M7VA 4CYSA 4GTXA 5HRTA 5LIAA 5L0BA 4ZG9A 3SZZA 1ANJA 1ZEFA 3IGYB 2GSNA 3NKRA 1Y6VA 1ELZA 1ALIA 3BDHA 3OT9A 1URAA 4KAVA 4N7TA 3NKPA 4TN0A 4GTYA 2QZUA 3T02A 3IGZB 5LQQA 3WAVA 4CXKA 1ANIA 4UORA 2G9YA 3KD8A 4LRFA 2VQRA 3NVLA 3TX0A 1FSUA 1HQAA 3BDGA 4UPHA 4NWXA 3UN3A 1N2KA 4LRCA 1KHNA 3WAYA 2GSUA 3LXQA 5LRMA 4KAYA 4UOOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3UN2 A;  3BDG B;  2W5V A;  1ZED A;  1SHN A;  4ZGA A;  3T00 A;  2GSO A;  3Q3Q A;  4KJG A;  1ZEB A;  2GA3 A;  4LRB A;  2D1G A;  3IDD A;  2IUC B;  3UO0 A;  1E2S P;  5C66 A;  5INH A;  1ALK A;  3ED4 A;  5IJQ A;  1ELY A;  4GTZ A;  1ALJ A;  1E1Z P;  2ANH A;  4MHX A;  1P49 A;  4LR9 A;  1HJK A;  3TG0 A;  1Y7A A;  3M8Z A;  3WBH A;  5AJ9 A;  4CXU A;  1EI6 A;  4GTW A;  1O98 A;  5IJS A;  2W5X A;  1HDH A;  1B8J A;  5K4P A;  2IUC A;  2XR9 A;  3SZY A;  4UPL A;  1AJB A;  1ED8 A;  1KH7 A;  1N2L A;  3NKM A;  4NWJ A;  1ED9 A;  2W5W A;  3DPC A;  3NKO A;  5L0E A;  1E33 P;  4LQY A;  4LR8 A;  4UPK A;  3WAX A;  4LRE A;  1AJA A;  4ZG6 A;  4ZG7 A;  4B56 A;  5L0K A;  2W8D A;  3MK0 A;  5LRN A;  3E2D A;  1URB A;  1KH4 A;  1EQJ A;  5TJ3 A;  3WAW A;  4FDJ A;  1SHQ A;  4KM4 A;  4QAX A;  4CYR A;  2W5T A;  3UN5 A;  4UPI A;  2IFY A;  3M8W A;  1ALH A;  2W5R A;  1EW9 A;  1E3C P;  5KXA A;  4LR2 A;  4CXS A;  1O99 A;  4LRA A;  2ZKT A;  3NKQ A;  2W8S A;  3DYC A;  4FDI A;  3A52 A;  3M8Y A;  1AJD A;  3BDF A;  5EGH A;  5EGE A;  3TWZ A;  1KHJ A;  2W5S A;  4MIV A;  5GRR A;  1KH9 A;  3B5Q A;  2X98 A;  1KHK A;  2XRG A;  2RH6 A;  5DLV A;  4UOP A;  1ELX A;  1EW8 A;  2GLQ A;  3NKN A;  1KHL A;  3CMR A;  4YR1 A;  1AUK A;  3T01 A;  4LRD A;  4MY4 A;  5DLW A;  1EJJ A;  2W5Q A;  4KJD A;  1AJC A;  4LR7 A;  5GOV A;  3UNY A;  1EW2 A;  1KH5 A;  3MK2 A;  5DLT A;  1K7H A;  3MK1 A;  3M7V A;  4CYS A;  4GTX A;  5HRT A;  5LIA A;  5L0B A;  4ZG9 A;  3SZZ A;  1ANJ A;  1ZEF A;  3IGY B;  2GSN A;  3NKR A;  1Y6V A;  1ELZ A;  1ALI A;  3BDH A;  3OT9 A;  1URA A;  4KAV A;  4N7T A;  3NKP A;  4TN0 A;  4GTY A;  2QZU A;  3T02 A;  3IGZ B;  5LQQ A;  3WAV A;  4CXK A;  1ANI A;  4UOR A;  2G9Y A;  3KD8 A;  4LRF A;  2VQR A;  3NVL A;  3TX0 A;  1FSU A;  1HQA A;  3BDG A;  4UPH A;  4NWX A;  3UN3 A;  1N2K A;  4LRC A;  1KHN A;  3WAY A;  2GSU A;  3LXQ A;  5LRM A;  4KAY A;  4UOO A; 
#chains in the Genus database with same CATH topology
 3UN2 A;  3BDG B;  2W5V A;  1ZED A;  1SHN A;  4ZGA A;  3T00 A;  2GSO A;  3Q3Q A;  4KJG A;  1ZEB A;  2GA3 A;  4LRB A;  2D1G A;  3IDD A;  2IUC B;  3UO0 A;  1E2S P;  5C66 A;  5INH A;  1ALK A;  3ED4 A;  5IJQ A;  1ELY A;  4GTZ A;  1ALJ A;  1E1Z P;  2ANH A;  4MHX A;  1P49 A;  4LR9 A;  1HJK A;  3TG0 A;  1Y7A A;  3M8Z A;  3WBH A;  5AJ9 A;  4CXU A;  1EI6 A;  4GTW A;  1O98 A;  5IJS A;  2W5X A;  1HDH A;  1B8J A;  5K4P A;  2IUC A;  2XR9 A;  3SZY A;  4UPL A;  1AJB A;  1ED8 A;  1KH7 A;  1N2L A;  3NKM A;  4NWJ A;  1ED9 A;  2W5W A;  3DPC A;  3NKO A;  5L0E A;  1E33 P;  4LQY A;  4LR8 A;  4UPK A;  3WAX A;  4LRE A;  1AJA A;  4ZG6 A;  4ZG7 A;  4B56 A;  5L0K A;  2W8D A;  3MK0 A;  5LRN A;  3E2D A;  1URB A;  1KH4 A;  1EQJ A;  5TJ3 A;  3WAW A;  4FDJ A;  1SHQ A;  4KM4 A;  4QAX A;  4CYR A;  2W5T A;  3UN5 A;  4UPI A;  2IFY A;  3M8W A;  1ALH A;  2W5R A;  1EW9 A;  1E3C P;  5KXA A;  4LR2 A;  4CXS A;  1O99 A;  4LRA A;  2ZKT A;  3NKQ A;  2W8S A;  3DYC A;  4FDI A;  3A52 A;  3M8Y A;  1AJD A;  3BDF A;  5EGH A;  5EGE A;  3TWZ A;  1KHJ A;  2W5S A;  4MIV A;  5GRR A;  1KH9 A;  3B5Q A;  2X98 A;  1KHK A;  2XRG A;  2RH6 A;  5DLV A;  4UOP A;  1ELX A;  1EW8 A;  2GLQ A;  3NKN A;  1KHL A;  3CMR A;  4YR1 A;  1AUK A;  3T01 A;  4LRD A;  4MY4 A;  5DLW A;  1EJJ A;  2W5Q A;  4KJD A;  1AJC A;  4LR7 A;  5GOV A;  3UNY A;  1EW2 A;  1KH5 A;  3MK2 A;  5DLT A;  1K7H A;  3MK1 A;  3M7V A;  4CYS A;  4GTX A;  5HRT A;  5LIA A;  5L0B A;  4ZG9 A;  3SZZ A;  1ANJ A;  1ZEF A;  3IGY B;  2GSN A;  3NKR A;  1Y6V A;  1ELZ A;  1ALI A;  3BDH A;  3OT9 A;  1URA A;  4KAV A;  4N7T A;  3NKP A;  4TN0 A;  4GTY A;  2QZU A;  3T02 A;  3IGZ B;  5LQQ A;  3WAV A;  4CXK A;  1ANI A;  4UOR A;  2G9Y A;  3KD8 A;  4LRF A;  2VQR A;  3NVL A;  3TX0 A;  1FSU A;  1HQA A;  3BDG A;  4UPH A;  4NWX A;  3UN3 A;  1N2K A;  4LRC A;  1KHN A;  3WAY A;  2GSU A;  3LXQ A;  5LRM A;  4KAY A;  4UOO A; 
#chains in the Genus database with same CATH homology
 3UN2 A;  3BDG B;  2W5V A;  1ZED A;  1SHN A;  4ZGA A;  3T00 A;  2GSO A;  3Q3Q A;  4KJG A;  1ZEB A;  2GA3 A;  4LRB A;  2D1G A;  3IDD A;  2IUC B;  3UO0 A;  1E2S P;  5C66 A;  5INH A;  1ALK A;  3ED4 A;  5IJQ A;  1ELY A;  4GTZ A;  1ALJ A;  1E1Z P;  2ANH A;  4MHX A;  1P49 A;  4LR9 A;  1HJK A;  3TG0 A;  1Y7A A;  3M8Z A;  3WBH A;  5AJ9 A;  4CXU A;  1EI6 A;  4GTW A;  1O98 A;  5IJS A;  2W5X A;  1HDH A;  1B8J A;  5K4P A;  2IUC A;  2XR9 A;  3SZY A;  4UPL A;  1AJB A;  1ED8 A;  1KH7 A;  1N2L A;  3NKM A;  4NWJ A;  1ED9 A;  2W5W A;  3DPC A;  3NKO A;  5L0E A;  1E33 P;  4LQY A;  4LR8 A;  4UPK A;  3WAX A;  4LRE A;  1AJA A;  4ZG6 A;  4ZG7 A;  4B56 A;  5L0K A;  2W8D A;  3MK0 A;  5LRN A;  3E2D A;  1URB A;  1KH4 A;  1EQJ A;  5TJ3 A;  3WAW A;  4FDJ A;  1SHQ A;  4KM4 A;  4QAX A;  4CYR A;  2W5T A;  3UN5 A;  4UPI A;  2IFY A;  3M8W A;  1ALH A;  2W5R A;  1EW9 A;  1E3C P;  5KXA A;  4LR2 A;  4CXS A;  1O99 A;  4LRA A;  2ZKT A;  3NKQ A;  2W8S A;  3DYC A;  4FDI A;  3A52 A;  3M8Y A;  1AJD A;  3BDF A;  5EGH A;  5EGE A;  3TWZ A;  1KHJ A;  2W5S A;  4MIV A;  5GRR A;  1KH9 A;  3B5Q A;  2X98 A;  1KHK A;  2XRG A;  2RH6 A;  5DLV A;  4UOP A;  1ELX A;  1EW8 A;  2GLQ A;  3NKN A;  1KHL A;  3CMR A;  4YR1 A;  1AUK A;  3T01 A;  4LRD A;  4MY4 A;  5DLW A;  1EJJ A;  2W5Q A;  4KJD A;  1AJC A;  4LR7 A;  5GOV A;  3UNY A;  1EW2 A;  1KH5 A;  3MK2 A;  5DLT A;  1K7H A;  3MK1 A;  3M7V A;  4CYS A;  4GTX A;  5HRT A;  5LIA A;  5L0B A;  4ZG9 A;  3SZZ A;  1ANJ A;  1ZEF A;  3IGY B;  2GSN A;  3NKR A;  1Y6V A;  1ELZ A;  1ALI A;  3BDH A;  3OT9 A;  1URA A;  4KAV A;  4N7T A;  3NKP A;  4TN0 A;  4GTY A;  2QZU A;  3T02 A;  3IGZ B;  5LQQ A;  3WAV A;  4CXK A;  1ANI A;  4UOR A;  2G9Y A;  3KD8 A;  4LRF A;  2VQR A;  3NVL A;  3TX0 A;  1FSU A;  1HQA A;  3BDG A;  4UPH A;  4NWX A;  3UN3 A;  1N2K A;  4LRC A;  1KHN A;  3WAY A;  2GSU A;  3LXQ A;  5LRM A;  4KAY A;  4UOO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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