3B5QA

Crystal structure of a putative sulfatase (np_810509.1) from bacteroides thetaiotaomicron vpi-5482 at 2.40 a resolution
Total Genus 165
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
165
Knots found
sequence length
464
structure length
464
Chain Sequence
EKPNFLIIQCDHLTQRVVGAYGQTQGCTLPIDEVASRGVIFSNAYVGCPLSQPSRAALWSGMMPHQTNVRSNSSEPVNTRLPENVPTLGSLFSESGYEAVHFGKTHDMGSLRGFKHKEPVAKPFTDPEFPVNNDSFLDVGTCEDAVAYLSNPPKEPFICIADFQNPHNICGFIGENAGVHTDRPISGPLPELPDNFDVEDWSNIPTPVQYICCSHRRMTQAAHWNEENYRHYIAAFQHYTKMVSKQVDSVLKALYSTPAGRNTIVVIMADHGDGMASHRMVTKHISFYDEMTNVPFIFAGPGIKQQKKPVDHLLTQPTLDLLPTLCDLAGIAVPAEKAGISLAPTLRGEKQKKSHPYVVSEWHSEYEYVTTPGRMVRGPRYKYTHYLEGNGEELYDMKKDPGERKNLAKDPKYSKILAEHRALLDDYITRSKDDYRSLKVDADPRCRNHTPGYPSHEGPGAREI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of a putative sulfatase (NP_810509.1) from Bacteroides thetaiotaomicron VPI-5482 at 2.40 A resolution
rcsb
source organism Bacteroides thetaiotaomicron vpi-5482
molecule tags Hydrolase
molecule keywords Putative sulfatase yidJ
total genus 165
structure length 464
sequence length 464
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2007-10-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
A PF16347 DUF4976 Domain of unknown function (DUF4976)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3b5qA00
3UN2A 4LRDA 3M7VA 4LR2A 2GSOA 4UOPA 4FDIA 1EW8A 1K7HA 3KD8A 2X98A 1URAA 2IUCB 1E2SP 1AJAA 3NKPA 3MK2A 2W5SA 5DLVA 3NKRA 4CYRA 3BDGA 1URBA 3DPCA 3E2DA 5IJQA 2IFYA 4UPLA 3M8ZA 3UN3A 5IJSA 1EW2A 5L0BA 3NKNA 5GOVA 3ED4A 1AJDA 1KH7A 4NWJA 2ANHA 1Y6VA 1N2KA 1ZEDA 2W5WA 1ALJA 3MK1A 1B8JA 4LR8A 4UPHA 3WBHA 2GSUA 1ZEBA 4KJDA 2ZKTA 2QZUA 4MY4A 4YR1A 1E33P 1HJKA 3TWZA 4ZG6A 4KJGA 1ELYA 1KH9A 1N2LA 1O98A 3A52A 3MK0A 2XR9A 4NWXA 3SZYA 3WAWA 4CXSA 1ANJA 4CXKA 3LXQA 3T01A 1HQAA 3IGYB 4ZG7A 2W5TA 5KXAA 1ANIA 1ED8A 1KHJA 3Q3QA 4UPIA 1P49A 2GA3A 1KHNA 4KM4A 4UORA 3NKQA 5DLTA 1Y7AA 3TG0A 1ED9A 1ALHA 5LIAA 1ALKA 3M8WA 4LRBA 1EQJA 3UO0A 1KHLA 4LR9A 2W5QA 2W5RA 4LREA 4LQYA 5C66A 3OT9A 4GTWA 3T02A 5L0KA 4QAXA 4ZG9A 1ELZA 1KH5A 1SHNA 1ALIA 4GTYA 1E1ZP 4MHXA 4MIVA 1KH4A 3WAVA 1ELXA 1KHKA 5LRMA 4LRCA 4UPKA 4LR7A 2GSNA 1EI6A 4UOOA 2GLQA 1ZEFA 5EGEA 3BDHA 3DYCA 3NKOA 2RH6A 3CMRA 1SHQA 5HRTA 1AJBA 1AUKA 2W5XA 2XRGA 4KAYA 3UNYA 5LRNA 3IGZB 5AJ9A 4ZGAA 3B5QA 3NKMA 4FDJA 2W8DA 5INHA 1FSUA 3IDDA 1EJJA 4B56A 1O99A 4GTXA 3SZZA 3WAXA 5TJ3A 4CXUA 2G9YA 3UN5A 4GTZA 2D1GA 5EGHA 2W8SA 3M8YA 3NVLA 1HDHA 3BDFA 1E3CP 4TN0A 2IUCA 4LRFA 4KAVA 5GRRA 3BDGB 5LQQA 2VQRA 2W5VA 3WAYA 1EW9A 4CYSA 1AJCA 4LRAA 5DLWA 5K4PA 3TX0A 5L0EA 4N7TA 3T00A
chains in the Genus database with same CATH superfamily
3UN2A 4LRDA 3M7VA 4LR2A 2GSOA 4UOPA 4FDIA 1EW8A 1K7HA 3KD8A 2X98A 1URAA 2IUCB 1E2SP 1AJAA 3NKPA 3MK2A 2W5SA 5DLVA 3NKRA 4CYRA 3BDGA 1URBA 3DPCA 3E2DA 5IJQA 2IFYA 4UPLA 3M8ZA 3UN3A 5IJSA 1EW2A 5L0BA 3NKNA 5GOVA 3ED4A 1AJDA 1KH7A 4NWJA 2ANHA 1Y6VA 1N2KA 1ZEDA 2W5WA 1ALJA 3MK1A 1B8JA 4LR8A 4UPHA 3WBHA 2GSUA 1ZEBA 4KJDA 2ZKTA 2QZUA 4MY4A 4YR1A 1E33P 1HJKA 3TWZA 4ZG6A 4KJGA 1ELYA 1KH9A 1N2LA 1O98A 3A52A 3MK0A 2XR9A 4NWXA 3SZYA 3WAWA 4CXSA 1ANJA 4CXKA 3LXQA 3T01A 1HQAA 3IGYB 4ZG7A 2W5TA 5KXAA 1ANIA 1ED8A 1KHJA 3Q3QA 4UPIA 1P49A 2GA3A 1KHNA 4KM4A 4UORA 3NKQA 5DLTA 1Y7AA 3TG0A 1ED9A 1ALHA 5LIAA 1ALKA 3M8WA 4LRBA 1EQJA 3UO0A 1KHLA 4LR9A 2W5QA 2W5RA 4LREA 4LQYA 5C66A 3OT9A 4GTWA 3T02A 5L0KA 4QAXA 4ZG9A 1ELZA 1KH5A 1SHNA 1ALIA 4GTYA 1E1ZP 4MHXA 4MIVA 1KH4A 3WAVA 1ELXA 1KHKA 5LRMA 4LRCA 4UPKA 4LR7A 2GSNA 1EI6A 4UOOA 2GLQA 1ZEFA 5EGEA 3BDHA 3DYCA 3NKOA 2RH6A 3CMRA 1SHQA 5HRTA 1AJBA 1AUKA 2W5XA 2XRGA 4KAYA 3UNYA 5LRNA 3IGZB 5AJ9A 4ZGAA 3B5QA 3NKMA 4FDJA 2W8DA 5INHA 1FSUA 3IDDA 1EJJA 4B56A 1O99A 4GTXA 3SZZA 3WAXA 5TJ3A 4CXUA 2G9YA 3UN5A 4GTZA 2D1GA 5EGHA 2W8SA 3M8YA 3NVLA 1HDHA 3BDFA 1E3CP 4TN0A 2IUCA 4LRFA 4KAVA 5GRRA 3BDGB 5LQQA 2VQRA 2W5VA 3WAYA 1EW9A 4CYSA 1AJCA 4LRAA 5DLWA 5K4PA 3TX0A 5L0EA 4N7TA 3T00A
chains in the Genus database with same CATH topology
3UN2A 4LRDA 3M7VA 4LR2A 2GSOA 4UOPA 4FDIA 1EW8A 1K7HA 3KD8A 2X98A 1URAA 2IUCB 1E2SP 1AJAA 3NKPA 3MK2A 2W5SA 5DLVA 3NKRA 4CYRA 3BDGA 1URBA 3DPCA 3E2DA 5IJQA 2IFYA 4UPLA 3M8ZA 3UN3A 5IJSA 1EW2A 5L0BA 3NKNA 5GOVA 3ED4A 1AJDA 1KH7A 4NWJA 2ANHA 1Y6VA 1N2KA 1ZEDA 2W5WA 1ALJA 3MK1A 1B8JA 4LR8A 4UPHA 3WBHA 2GSUA 1ZEBA 4KJDA 2ZKTA 2QZUA 4MY4A 4YR1A 1E33P 1HJKA 3TWZA 4ZG6A 4KJGA 1ELYA 1KH9A 1N2LA 1O98A 3A52A 3MK0A 2XR9A 4NWXA 3SZYA 3WAWA 4CXSA 1ANJA 4CXKA 3LXQA 3T01A 1HQAA 3IGYB 4ZG7A 2W5TA 5KXAA 1ANIA 1ED8A 1KHJA 3Q3QA 4UPIA 1P49A 2GA3A 1KHNA 4KM4A 4UORA 3NKQA 5DLTA 1Y7AA 3TG0A 1ED9A 1ALHA 5LIAA 1ALKA 3M8WA 4LRBA 1EQJA 3UO0A 1KHLA 4LR9A 2W5QA 2W5RA 4LREA 4LQYA 5C66A 3OT9A 4GTWA 3T02A 5L0KA 4QAXA 4ZG9A 1ELZA 1KH5A 1SHNA 1ALIA 4GTYA 1E1ZP 4MHXA 4MIVA 1KH4A 3WAVA 1ELXA 1KHKA 5LRMA 4LRCA 4UPKA 4LR7A 2GSNA 1EI6A 4UOOA 2GLQA 1ZEFA 5EGEA 3BDHA 3DYCA 3NKOA 2RH6A 3CMRA 1SHQA 5HRTA 1AJBA 1AUKA 2W5XA 2XRGA 4KAYA 3UNYA 5LRNA 3IGZB 5AJ9A 4ZGAA 3B5QA 3NKMA 4FDJA 2W8DA 5INHA 1FSUA 3IDDA 1EJJA 4B56A 1O99A 4GTXA 3SZZA 3WAXA 5TJ3A 4CXUA 2G9YA 3UN5A 4GTZA 2D1GA 5EGHA 2W8SA 3M8YA 3NVLA 1HDHA 3BDFA 1E3CP 4TN0A 2IUCA 4LRFA 4KAVA 5GRRA 3BDGB 5LQQA 2VQRA 2W5VA 3WAYA 1EW9A 4CYSA 1AJCA 4LRAA 5DLWA 5K4PA 3TX0A 5L0EA 4N7TA 3T00A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3UN2 A;  4LRD A;  3M7V A;  4LR2 A;  2GSO A;  4UOP A;  4FDI A;  1EW8 A;  1K7H A;  3KD8 A;  2X98 A;  1URA A;  2IUC B;  1E2S P;  1AJA A;  3NKP A;  3MK2 A;  2W5S A;  5DLV A;  3NKR A;  4CYR A;  3BDG A;  1URB A;  3DPC A;  3E2D A;  5IJQ A;  2IFY A;  4UPL A;  3M8Z A;  3UN3 A;  5IJS A;  1EW2 A;  5L0B A;  3NKN A;  5GOV A;  3ED4 A;  1AJD A;  1KH7 A;  4NWJ A;  2ANH A;  1Y6V A;  1N2K A;  1ZED A;  2W5W A;  1ALJ A;  3MK1 A;  1B8J A;  4LR8 A;  4UPH A;  3WBH A;  2GSU A;  1ZEB A;  4KJD A;  2ZKT A;  2QZU A;  4MY4 A;  4YR1 A;  1E33 P;  1HJK A;  3TWZ A;  4ZG6 A;  4KJG A;  1ELY A;  1KH9 A;  1N2L A;  1O98 A;  3A52 A;  3MK0 A;  2XR9 A;  4NWX A;  3SZY A;  3WAW A;  4CXS A;  1ANJ A;  4CXK A;  3LXQ A;  3T01 A;  1HQA A;  3IGY B;  4ZG7 A;  2W5T A;  5KXA A;  1ANI A;  1ED8 A;  1KHJ A;  3Q3Q A;  4UPI A;  1P49 A;  2GA3 A;  1KHN A;  4KM4 A;  4UOR A;  3NKQ A;  5DLT A;  1Y7A A;  3TG0 A;  1ED9 A;  1ALH A;  5LIA A;  1ALK A;  3M8W A;  4LRB A;  1EQJ A;  3UO0 A;  1KHL A;  4LR9 A;  2W5Q A;  2W5R A;  4LRE A;  4LQY A;  5C66 A;  3OT9 A;  4GTW A;  3T02 A;  5L0K A;  4QAX A;  4ZG9 A;  1ELZ A;  1KH5 A;  1SHN A;  1ALI A;  4GTY A;  1E1Z P;  4MHX A;  4MIV A;  1KH4 A;  3WAV A;  1ELX A;  1KHK A;  5LRM A;  4LRC A;  4UPK A;  4LR7 A;  2GSN A;  1EI6 A;  4UOO A;  2GLQ A;  1ZEF A;  5EGE A;  3BDH A;  3DYC A;  3NKO A;  2RH6 A;  3CMR A;  1SHQ A;  5HRT A;  1AJB A;  1AUK A;  2W5X A;  2XRG A;  4KAY A;  3UNY A;  5LRN A;  3IGZ B;  5AJ9 A;  4ZGA A;  3B5Q A;  3NKM A;  4FDJ A;  2W8D A;  5INH A;  1FSU A;  3IDD A;  1EJJ A;  4B56 A;  1O99 A;  4GTX A;  3SZZ A;  3WAX A;  5TJ3 A;  4CXU A;  2G9Y A;  3UN5 A;  4GTZ A;  2D1G A;  5EGH A;  2W8S A;  3M8Y A;  3NVL A;  1HDH A;  3BDF A;  1E3C P;  4TN0 A;  2IUC A;  4LRF A;  4KAV A;  5GRR A;  3BDG B;  5LQQ A;  2VQR A;  2W5V A;  3WAY A;  1EW9 A;  4CYS A;  1AJC A;  4LRA A;  5DLW A;  5K4P A;  3TX0 A;  5L0E A;  4N7T A;  3T00 A; 
#chains in the Genus database with same CATH topology
 3UN2 A;  4LRD A;  3M7V A;  4LR2 A;  2GSO A;  4UOP A;  4FDI A;  1EW8 A;  1K7H A;  3KD8 A;  2X98 A;  1URA A;  2IUC B;  1E2S P;  1AJA A;  3NKP A;  3MK2 A;  2W5S A;  5DLV A;  3NKR A;  4CYR A;  3BDG A;  1URB A;  3DPC A;  3E2D A;  5IJQ A;  2IFY A;  4UPL A;  3M8Z A;  3UN3 A;  5IJS A;  1EW2 A;  5L0B A;  3NKN A;  5GOV A;  3ED4 A;  1AJD A;  1KH7 A;  4NWJ A;  2ANH A;  1Y6V A;  1N2K A;  1ZED A;  2W5W A;  1ALJ A;  3MK1 A;  1B8J A;  4LR8 A;  4UPH A;  3WBH A;  2GSU A;  1ZEB A;  4KJD A;  2ZKT A;  2QZU A;  4MY4 A;  4YR1 A;  1E33 P;  1HJK A;  3TWZ A;  4ZG6 A;  4KJG A;  1ELY A;  1KH9 A;  1N2L A;  1O98 A;  3A52 A;  3MK0 A;  2XR9 A;  4NWX A;  3SZY A;  3WAW A;  4CXS A;  1ANJ A;  4CXK A;  3LXQ A;  3T01 A;  1HQA A;  3IGY B;  4ZG7 A;  2W5T A;  5KXA A;  1ANI A;  1ED8 A;  1KHJ A;  3Q3Q A;  4UPI A;  1P49 A;  2GA3 A;  1KHN A;  4KM4 A;  4UOR A;  3NKQ A;  5DLT A;  1Y7A A;  3TG0 A;  1ED9 A;  1ALH A;  5LIA A;  1ALK A;  3M8W A;  4LRB A;  1EQJ A;  3UO0 A;  1KHL A;  4LR9 A;  2W5Q A;  2W5R A;  4LRE A;  4LQY A;  5C66 A;  3OT9 A;  4GTW A;  3T02 A;  5L0K A;  4QAX A;  4ZG9 A;  1ELZ A;  1KH5 A;  1SHN A;  1ALI A;  4GTY A;  1E1Z P;  4MHX A;  4MIV A;  1KH4 A;  3WAV A;  1ELX A;  1KHK A;  5LRM A;  4LRC A;  4UPK A;  4LR7 A;  2GSN A;  1EI6 A;  4UOO A;  2GLQ A;  1ZEF A;  5EGE A;  3BDH A;  3DYC A;  3NKO A;  2RH6 A;  3CMR A;  1SHQ A;  5HRT A;  1AJB A;  1AUK A;  2W5X A;  2XRG A;  4KAY A;  3UNY A;  5LRN A;  3IGZ B;  5AJ9 A;  4ZGA A;  3B5Q A;  3NKM A;  4FDJ A;  2W8D A;  5INH A;  1FSU A;  3IDD A;  1EJJ A;  4B56 A;  1O99 A;  4GTX A;  3SZZ A;  3WAX A;  5TJ3 A;  4CXU A;  2G9Y A;  3UN5 A;  4GTZ A;  2D1G A;  5EGH A;  2W8S A;  3M8Y A;  3NVL A;  1HDH A;  3BDF A;  1E3C P;  4TN0 A;  2IUC A;  4LRF A;  4KAV A;  5GRR A;  3BDG B;  5LQQ A;  2VQR A;  2W5V A;  3WAY A;  1EW9 A;  4CYS A;  1AJC A;  4LRA A;  5DLW A;  5K4P A;  3TX0 A;  5L0E A;  4N7T A;  3T00 A; 
#chains in the Genus database with same CATH homology
 3UN2 A;  4LRD A;  3M7V A;  4LR2 A;  2GSO A;  4UOP A;  4FDI A;  1EW8 A;  1K7H A;  3KD8 A;  2X98 A;  1URA A;  2IUC B;  1E2S P;  1AJA A;  3NKP A;  3MK2 A;  2W5S A;  5DLV A;  3NKR A;  4CYR A;  3BDG A;  1URB A;  3DPC A;  3E2D A;  5IJQ A;  2IFY A;  4UPL A;  3M8Z A;  3UN3 A;  5IJS A;  1EW2 A;  5L0B A;  3NKN A;  5GOV A;  3ED4 A;  1AJD A;  1KH7 A;  4NWJ A;  2ANH A;  1Y6V A;  1N2K A;  1ZED A;  2W5W A;  1ALJ A;  3MK1 A;  1B8J A;  4LR8 A;  4UPH A;  3WBH A;  2GSU A;  1ZEB A;  4KJD A;  2ZKT A;  2QZU A;  4MY4 A;  4YR1 A;  1E33 P;  1HJK A;  3TWZ A;  4ZG6 A;  4KJG A;  1ELY A;  1KH9 A;  1N2L A;  1O98 A;  3A52 A;  3MK0 A;  2XR9 A;  4NWX A;  3SZY A;  3WAW A;  4CXS A;  1ANJ A;  4CXK A;  3LXQ A;  3T01 A;  1HQA A;  3IGY B;  4ZG7 A;  2W5T A;  5KXA A;  1ANI A;  1ED8 A;  1KHJ A;  3Q3Q A;  4UPI A;  1P49 A;  2GA3 A;  1KHN A;  4KM4 A;  4UOR A;  3NKQ A;  5DLT A;  1Y7A A;  3TG0 A;  1ED9 A;  1ALH A;  5LIA A;  1ALK A;  3M8W A;  4LRB A;  1EQJ A;  3UO0 A;  1KHL A;  4LR9 A;  2W5Q A;  2W5R A;  4LRE A;  4LQY A;  5C66 A;  3OT9 A;  4GTW A;  3T02 A;  5L0K A;  4QAX A;  4ZG9 A;  1ELZ A;  1KH5 A;  1SHN A;  1ALI A;  4GTY A;  1E1Z P;  4MHX A;  4MIV A;  1KH4 A;  3WAV A;  1ELX A;  1KHK A;  5LRM A;  4LRC A;  4UPK A;  4LR7 A;  2GSN A;  1EI6 A;  4UOO A;  2GLQ A;  1ZEF A;  5EGE A;  3BDH A;  3DYC A;  3NKO A;  2RH6 A;  3CMR A;  1SHQ A;  5HRT A;  1AJB A;  1AUK A;  2W5X A;  2XRG A;  4KAY A;  3UNY A;  5LRN A;  3IGZ B;  5AJ9 A;  4ZGA A;  3B5Q A;  3NKM A;  4FDJ A;  2W8D A;  5INH A;  1FSU A;  3IDD A;  1EJJ A;  4B56 A;  1O99 A;  4GTX A;  3SZZ A;  3WAX A;  5TJ3 A;  4CXU A;  2G9Y A;  3UN5 A;  4GTZ A;  2D1G A;  5EGH A;  2W8S A;  3M8Y A;  3NVL A;  1HDH A;  3BDF A;  1E3C P;  4TN0 A;  2IUC A;  4LRF A;  4KAV A;  5GRR A;  3BDG B;  5LQQ A;  2VQR A;  2W5V A;  3WAY A;  1EW9 A;  4CYS A;  1AJC A;  4LRA A;  5DLW A;  5K4P A;  3TX0 A;  5L0E A;  4N7T A;  3T00 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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