3B5QA

Crystal structure of a putative sulfatase (np_810509.1) from bacteroides thetaiotaomicron vpi-5482 at 2.40 a resolution
Total Genus 165
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
165
Knots found
sequence length
464
structure length
464
Chain Sequence
EKPNFLIIQCDHLTQRVVGAYGQTQGCTLPIDEVASRGVIFSNAYVGCPLSQPSRAALWSGMMPHQTNVRSNSSEPVNTRLPENVPTLGSLFSESGYEAVHFGKTHDMGSLRGFKHKEPVAKPFTDPEFPVNNDSFLDVGTCEDAVAYLSNPPKEPFICIADFQNPHNICGFIGENAGVHTDRPISGPLPELPDNFDVEDWSNIPTPVQYICCSHRRMTQAAHWNEENYRHYIAAFQHYTKMVSKQVDSVLKALYSTPAGRNTIVVIMADHGDGMASHRMVTKHISFYDEMTNVPFIFAGPGIKQQKKPVDHLLTQPTLDLLPTLCDLAGIAVPAEKAGISLAPTLRGEKQKKSHPYVVSEWHSEYEYVTTPGRMVRGPRYKYTHYLEGNGEELYDMKKDPGERKNLAKDPKYSKILAEHRALLDDYITRSKDDYRSLKVDADPRCRNHTPGYPSHEGPGAREI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Putative sulfatase yidJ
publication title Crystal structure of a putative sulfatase (NP_810509.1) from Bacteroides thetaiotaomicron VPI-5482 at 2.40 A resolution
rcsb
source organism Bacteroides thetaiotaomicron vpi-5482
molecule tags Hydrolase
total genus 165
structure length 464
sequence length 464
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2007-10-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
A PF16347 DUF4976 Domain of unknown function (DUF4976)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3b5qA00
5DLVA 3WAXA 1KH9A 4NWXA 1ALJA 2W8DA 4GTZA 5GOVA 1K7HA 4CYSA 2GA3A 2W5QA 2W5XA 3MK2A 1P49A 3NKQA 1Y6VA 5EGEA 3M8ZA 4FDIA 1HJKA 1ZEBA 4LRBA 1EI6A 3KD8A 4LR7A 1ELZA 4KAYA 3UN2A 5IJQA 4LQYA 5L0KA 4GTYA 5LIAA 3SZYA 3TX0A 5INHA 1SHQA 1URAA 3LXQA 3MK0A 2ZKTA 1HDHA 4ZG6A 5LRMA 2W8SA 3TWZA 2XRGA 3IGZB 1HQAA 1ALIA 1EQJA 3NKMA 2IUCA 5GRRA 1O99A 4UPLA 3TG0A 2W5TA 4MIVA 5DLTA 1ANIA 3CMRA 3M8WA 3WBHA 1E1ZP 1ANJA 3A52A 1SHNA 4KM4A 1KHLA 1FSUA 2ANHA 4TN0A 2G9YA 3MK1A 5IJSA 5C66A 3WAWA 1ELYA 2W5VA 3BDFA 4MY4A 2IUCB 3IGYB 1EJJA 5LRNA 4ZGAA 1ALHA 3BDHA 4QAXA 1KHKA 1AJBA 2W5RA 4LR9A 4UOOA 4ZG7A 4UPHA 3UN3A 1N2LA 2IFYA 3OT9A 4GTWA 3UNYA 1URBA 4CXKA 1EW8A 1E33P 2D1GA 3B5QA 1AJCA 4CYRA 2RH6A 3M7VA 3NKRA 1AJAA 1EW9A 1N2KA 1ELXA 3DYCA 3NKOA 4NWJA 3WAYA 2GSUA 4KAVA 4YR1A 5HRTA 1E3CP 3M8YA 3WAVA 1ED8A 3Q3QA 4KJGA 3E2DA 4LRCA 2X98A 4LRAA 4CXSA 3NKNA 2W5SA 4FDJA 1AJDA 3BDGB 4LR2A 2VQRA 2GSNA 1KHJA 5L0BA 3NKPA 4GTXA 3DPCA 4UOPA 4UPKA 2GSOA 1KH4A 4LRFA 2W5WA 4ZG9A 3T02A 2GLQA 4KJDA 4LR8A 5AJ9A 3IDDA 3UN5A 1KH5A 4MHXA 4UPIA 5DLWA 3BDGA 3T01A 5TJ3A 1ZEDA 2QZUA 1ED9A 3T00A 4B56A 1EW2A 1AUKA 4CXUA 5KXAA 1ZEFA 4LRDA 1KH7A 4UORA 4LREA 1ALKA 1B8JA 2XR9A 4N7TA 1O98A 3NVLA 3ED4A 5EGHA 5K4PA 3SZZA 5L0EA 1KHNA 1Y7AA 1E2SP 3UO0A 5LQQA
chains in the Genus database with same CATH superfamily
5DLVA 3WAXA 1KH9A 4NWXA 1ALJA 2W8DA 4GTZA 5GOVA 1K7HA 4CYSA 2GA3A 2W5QA 2W5XA 3MK2A 1P49A 3NKQA 1Y6VA 5EGEA 3M8ZA 4FDIA 1HJKA 1ZEBA 4LRBA 1EI6A 3KD8A 4LR7A 1ELZA 4KAYA 3UN2A 5IJQA 4LQYA 5L0KA 4GTYA 5LIAA 3SZYA 3TX0A 5INHA 1SHQA 1URAA 3LXQA 3MK0A 2ZKTA 1HDHA 4ZG6A 5LRMA 2W8SA 3TWZA 2XRGA 3IGZB 1HQAA 1ALIA 1EQJA 3NKMA 2IUCA 5GRRA 1O99A 4UPLA 3TG0A 2W5TA 4MIVA 5DLTA 1ANIA 3CMRA 3M8WA 3WBHA 1E1ZP 1ANJA 3A52A 1SHNA 4KM4A 1KHLA 1FSUA 2ANHA 4TN0A 2G9YA 3MK1A 5IJSA 5C66A 3WAWA 1ELYA 2W5VA 3BDFA 4MY4A 2IUCB 3IGYB 1EJJA 5LRNA 4ZGAA 1ALHA 3BDHA 4QAXA 1KHKA 1AJBA 2W5RA 4LR9A 4UOOA 4ZG7A 4UPHA 3UN3A 1N2LA 2IFYA 3OT9A 4GTWA 3UNYA 1URBA 4CXKA 1EW8A 1E33P 2D1GA 3B5QA 1AJCA 4CYRA 2RH6A 3M7VA 3NKRA 1AJAA 1EW9A 1N2KA 1ELXA 3DYCA 3NKOA 4NWJA 3WAYA 2GSUA 4KAVA 4YR1A 5HRTA 1E3CP 3M8YA 3WAVA 1ED8A 3Q3QA 4KJGA 3E2DA 4LRCA 2X98A 4LRAA 4CXSA 3NKNA 2W5SA 4FDJA 1AJDA 3BDGB 4LR2A 2VQRA 2GSNA 1KHJA 5L0BA 3NKPA 4GTXA 3DPCA 4UOPA 4UPKA 2GSOA 1KH4A 4LRFA 2W5WA 4ZG9A 3T02A 2GLQA 4KJDA 4LR8A 5AJ9A 3IDDA 3UN5A 1KH5A 4MHXA 4UPIA 5DLWA 3BDGA 3T01A 5TJ3A 1ZEDA 2QZUA 1ED9A 3T00A 4B56A 1EW2A 1AUKA 4CXUA 5KXAA 1ZEFA 4LRDA 1KH7A 4UORA 4LREA 1ALKA 1B8JA 2XR9A 4N7TA 1O98A 3NVLA 3ED4A 5EGHA 5K4PA 3SZZA 5L0EA 1KHNA 1Y7AA 1E2SP 3UO0A 5LQQA
chains in the Genus database with same CATH topology
5DLVA 3WAXA 1KH9A 4NWXA 1ALJA 2W8DA 4GTZA 5GOVA 1K7HA 4CYSA 2GA3A 2W5QA 2W5XA 3MK2A 1P49A 3NKQA 1Y6VA 5EGEA 3M8ZA 4FDIA 1HJKA 1ZEBA 4LRBA 1EI6A 3KD8A 4LR7A 1ELZA 4KAYA 3UN2A 5IJQA 4LQYA 5L0KA 4GTYA 5LIAA 3SZYA 3TX0A 5INHA 1SHQA 1URAA 3LXQA 3MK0A 2ZKTA 1HDHA 4ZG6A 5LRMA 2W8SA 3TWZA 2XRGA 3IGZB 1HQAA 1ALIA 1EQJA 3NKMA 2IUCA 5GRRA 1O99A 4UPLA 3TG0A 2W5TA 4MIVA 5DLTA 1ANIA 3CMRA 3M8WA 3WBHA 1E1ZP 1ANJA 3A52A 1SHNA 4KM4A 1KHLA 1FSUA 2ANHA 4TN0A 2G9YA 3MK1A 5IJSA 5C66A 3WAWA 1ELYA 2W5VA 3BDFA 4MY4A 2IUCB 3IGYB 1EJJA 5LRNA 4ZGAA 1ALHA 3BDHA 4QAXA 1KHKA 1AJBA 2W5RA 4LR9A 4UOOA 4ZG7A 4UPHA 3UN3A 1N2LA 2IFYA 3OT9A 4GTWA 3UNYA 1URBA 4CXKA 1EW8A 1E33P 2D1GA 3B5QA 1AJCA 4CYRA 2RH6A 3M7VA 3NKRA 1AJAA 1EW9A 1N2KA 1ELXA 3DYCA 3NKOA 4NWJA 3WAYA 2GSUA 4KAVA 4YR1A 5HRTA 1E3CP 3M8YA 3WAVA 1ED8A 3Q3QA 4KJGA 3E2DA 4LRCA 2X98A 4LRAA 4CXSA 3NKNA 2W5SA 4FDJA 1AJDA 3BDGB 4LR2A 2VQRA 2GSNA 1KHJA 5L0BA 3NKPA 4GTXA 3DPCA 4UOPA 4UPKA 2GSOA 1KH4A 4LRFA 2W5WA 4ZG9A 3T02A 2GLQA 4KJDA 4LR8A 5AJ9A 3IDDA 3UN5A 1KH5A 4MHXA 4UPIA 5DLWA 3BDGA 3T01A 5TJ3A 1ZEDA 2QZUA 1ED9A 3T00A 4B56A 1EW2A 1AUKA 4CXUA 5KXAA 1ZEFA 4LRDA 1KH7A 4UORA 4LREA 1ALKA 1B8JA 2XR9A 4N7TA 1O98A 3NVLA 3ED4A 5EGHA 5K4PA 3SZZA 5L0EA 1KHNA 1Y7AA 1E2SP 3UO0A 5LQQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DLV A;  3WAX A;  1KH9 A;  4NWX A;  1ALJ A;  2W8D A;  4GTZ A;  5GOV A;  1K7H A;  4CYS A;  2GA3 A;  2W5Q A;  2W5X A;  3MK2 A;  1P49 A;  3NKQ A;  1Y6V A;  5EGE A;  3M8Z A;  4FDI A;  1HJK A;  1ZEB A;  4LRB A;  1EI6 A;  3KD8 A;  4LR7 A;  1ELZ A;  4KAY A;  3UN2 A;  5IJQ A;  4LQY A;  5L0K A;  4GTY A;  5LIA A;  3SZY A;  3TX0 A;  5INH A;  1SHQ A;  1URA A;  3LXQ A;  3MK0 A;  2ZKT A;  1HDH A;  4ZG6 A;  5LRM A;  2W8S A;  3TWZ A;  2XRG A;  3IGZ B;  1HQA A;  1ALI A;  1EQJ A;  3NKM A;  2IUC A;  5GRR A;  1O99 A;  4UPL A;  3TG0 A;  2W5T A;  4MIV A;  5DLT A;  1ANI A;  3CMR A;  3M8W A;  3WBH A;  1E1Z P;  1ANJ A;  3A52 A;  1SHN A;  4KM4 A;  1KHL A;  1FSU A;  2ANH A;  4TN0 A;  2G9Y A;  3MK1 A;  5IJS A;  5C66 A;  3WAW A;  1ELY A;  2W5V A;  3BDF A;  4MY4 A;  2IUC B;  3IGY B;  1EJJ A;  5LRN A;  4ZGA A;  1ALH A;  3BDH A;  4QAX A;  1KHK A;  1AJB A;  2W5R A;  4LR9 A;  4UOO A;  4ZG7 A;  4UPH A;  3UN3 A;  1N2L A;  2IFY A;  3OT9 A;  4GTW A;  3UNY A;  1URB A;  4CXK A;  1EW8 A;  1E33 P;  2D1G A;  3B5Q A;  1AJC A;  4CYR A;  2RH6 A;  3M7V A;  3NKR A;  1AJA A;  1EW9 A;  1N2K A;  1ELX A;  3DYC A;  3NKO A;  4NWJ A;  3WAY A;  2GSU A;  4KAV A;  4YR1 A;  5HRT A;  1E3C P;  3M8Y A;  3WAV A;  1ED8 A;  3Q3Q A;  4KJG A;  3E2D A;  4LRC A;  2X98 A;  4LRA A;  4CXS A;  3NKN A;  2W5S A;  4FDJ A;  1AJD A;  3BDG B;  4LR2 A;  2VQR A;  2GSN A;  1KHJ A;  5L0B A;  3NKP A;  4GTX A;  3DPC A;  4UOP A;  4UPK A;  2GSO A;  1KH4 A;  4LRF A;  2W5W A;  4ZG9 A;  3T02 A;  2GLQ A;  4KJD A;  4LR8 A;  5AJ9 A;  3IDD A;  3UN5 A;  1KH5 A;  4MHX A;  4UPI A;  5DLW A;  3BDG A;  3T01 A;  5TJ3 A;  1ZED A;  2QZU A;  1ED9 A;  3T00 A;  4B56 A;  1EW2 A;  1AUK A;  4CXU A;  5KXA A;  1ZEF A;  4LRD A;  1KH7 A;  4UOR A;  4LRE A;  1ALK A;  1B8J A;  2XR9 A;  4N7T A;  1O98 A;  3NVL A;  3ED4 A;  5EGH A;  5K4P A;  3SZZ A;  5L0E A;  1KHN A;  1Y7A A;  1E2S P;  3UO0 A;  5LQQ A; 
#chains in the Genus database with same CATH topology
 5DLV A;  3WAX A;  1KH9 A;  4NWX A;  1ALJ A;  2W8D A;  4GTZ A;  5GOV A;  1K7H A;  4CYS A;  2GA3 A;  2W5Q A;  2W5X A;  3MK2 A;  1P49 A;  3NKQ A;  1Y6V A;  5EGE A;  3M8Z A;  4FDI A;  1HJK A;  1ZEB A;  4LRB A;  1EI6 A;  3KD8 A;  4LR7 A;  1ELZ A;  4KAY A;  3UN2 A;  5IJQ A;  4LQY A;  5L0K A;  4GTY A;  5LIA A;  3SZY A;  3TX0 A;  5INH A;  1SHQ A;  1URA A;  3LXQ A;  3MK0 A;  2ZKT A;  1HDH A;  4ZG6 A;  5LRM A;  2W8S A;  3TWZ A;  2XRG A;  3IGZ B;  1HQA A;  1ALI A;  1EQJ A;  3NKM A;  2IUC A;  5GRR A;  1O99 A;  4UPL A;  3TG0 A;  2W5T A;  4MIV A;  5DLT A;  1ANI A;  3CMR A;  3M8W A;  3WBH A;  1E1Z P;  1ANJ A;  3A52 A;  1SHN A;  4KM4 A;  1KHL A;  1FSU A;  2ANH A;  4TN0 A;  2G9Y A;  3MK1 A;  5IJS A;  5C66 A;  3WAW A;  1ELY A;  2W5V A;  3BDF A;  4MY4 A;  2IUC B;  3IGY B;  1EJJ A;  5LRN A;  4ZGA A;  1ALH A;  3BDH A;  4QAX A;  1KHK A;  1AJB A;  2W5R A;  4LR9 A;  4UOO A;  4ZG7 A;  4UPH A;  3UN3 A;  1N2L A;  2IFY A;  3OT9 A;  4GTW A;  3UNY A;  1URB A;  4CXK A;  1EW8 A;  1E33 P;  2D1G A;  3B5Q A;  1AJC A;  4CYR A;  2RH6 A;  3M7V A;  3NKR A;  1AJA A;  1EW9 A;  1N2K A;  1ELX A;  3DYC A;  3NKO A;  4NWJ A;  3WAY A;  2GSU A;  4KAV A;  4YR1 A;  5HRT A;  1E3C P;  3M8Y A;  3WAV A;  1ED8 A;  3Q3Q A;  4KJG A;  3E2D A;  4LRC A;  2X98 A;  4LRA A;  4CXS A;  3NKN A;  2W5S A;  4FDJ A;  1AJD A;  3BDG B;  4LR2 A;  2VQR A;  2GSN A;  1KHJ A;  5L0B A;  3NKP A;  4GTX A;  3DPC A;  4UOP A;  4UPK A;  2GSO A;  1KH4 A;  4LRF A;  2W5W A;  4ZG9 A;  3T02 A;  2GLQ A;  4KJD A;  4LR8 A;  5AJ9 A;  3IDD A;  3UN5 A;  1KH5 A;  4MHX A;  4UPI A;  5DLW A;  3BDG A;  3T01 A;  5TJ3 A;  1ZED A;  2QZU A;  1ED9 A;  3T00 A;  4B56 A;  1EW2 A;  1AUK A;  4CXU A;  5KXA A;  1ZEF A;  4LRD A;  1KH7 A;  4UOR A;  4LRE A;  1ALK A;  1B8J A;  2XR9 A;  4N7T A;  1O98 A;  3NVL A;  3ED4 A;  5EGH A;  5K4P A;  3SZZ A;  5L0E A;  1KHN A;  1Y7A A;  1E2S P;  3UO0 A;  5LQQ A; 
#chains in the Genus database with same CATH homology
 5DLV A;  3WAX A;  1KH9 A;  4NWX A;  1ALJ A;  2W8D A;  4GTZ A;  5GOV A;  1K7H A;  4CYS A;  2GA3 A;  2W5Q A;  2W5X A;  3MK2 A;  1P49 A;  3NKQ A;  1Y6V A;  5EGE A;  3M8Z A;  4FDI A;  1HJK A;  1ZEB A;  4LRB A;  1EI6 A;  3KD8 A;  4LR7 A;  1ELZ A;  4KAY A;  3UN2 A;  5IJQ A;  4LQY A;  5L0K A;  4GTY A;  5LIA A;  3SZY A;  3TX0 A;  5INH A;  1SHQ A;  1URA A;  3LXQ A;  3MK0 A;  2ZKT A;  1HDH A;  4ZG6 A;  5LRM A;  2W8S A;  3TWZ A;  2XRG A;  3IGZ B;  1HQA A;  1ALI A;  1EQJ A;  3NKM A;  2IUC A;  5GRR A;  1O99 A;  4UPL A;  3TG0 A;  2W5T A;  4MIV A;  5DLT A;  1ANI A;  3CMR A;  3M8W A;  3WBH A;  1E1Z P;  1ANJ A;  3A52 A;  1SHN A;  4KM4 A;  1KHL A;  1FSU A;  2ANH A;  4TN0 A;  2G9Y A;  3MK1 A;  5IJS A;  5C66 A;  3WAW A;  1ELY A;  2W5V A;  3BDF A;  4MY4 A;  2IUC B;  3IGY B;  1EJJ A;  5LRN A;  4ZGA A;  1ALH A;  3BDH A;  4QAX A;  1KHK A;  1AJB A;  2W5R A;  4LR9 A;  4UOO A;  4ZG7 A;  4UPH A;  3UN3 A;  1N2L A;  2IFY A;  3OT9 A;  4GTW A;  3UNY A;  1URB A;  4CXK A;  1EW8 A;  1E33 P;  2D1G A;  3B5Q A;  1AJC A;  4CYR A;  2RH6 A;  3M7V A;  3NKR A;  1AJA A;  1EW9 A;  1N2K A;  1ELX A;  3DYC A;  3NKO A;  4NWJ A;  3WAY A;  2GSU A;  4KAV A;  4YR1 A;  5HRT A;  1E3C P;  3M8Y A;  3WAV A;  1ED8 A;  3Q3Q A;  4KJG A;  3E2D A;  4LRC A;  2X98 A;  4LRA A;  4CXS A;  3NKN A;  2W5S A;  4FDJ A;  1AJD A;  3BDG B;  4LR2 A;  2VQR A;  2GSN A;  1KHJ A;  5L0B A;  3NKP A;  4GTX A;  3DPC A;  4UOP A;  4UPK A;  2GSO A;  1KH4 A;  4LRF A;  2W5W A;  4ZG9 A;  3T02 A;  2GLQ A;  4KJD A;  4LR8 A;  5AJ9 A;  3IDD A;  3UN5 A;  1KH5 A;  4MHX A;  4UPI A;  5DLW A;  3BDG A;  3T01 A;  5TJ3 A;  1ZED A;  2QZU A;  1ED9 A;  3T00 A;  4B56 A;  1EW2 A;  1AUK A;  4CXU A;  5KXA A;  1ZEF A;  4LRD A;  1KH7 A;  4UOR A;  4LRE A;  1ALK A;  1B8J A;  2XR9 A;  4N7T A;  1O98 A;  3NVL A;  3ED4 A;  5EGH A;  5K4P A;  3SZZ A;  5L0E A;  1KHN A;  1Y7A A;  1E2S P;  3UO0 A;  5LQQ A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...