3B82B

Structure of the eef2-exoa(e546h)-nad+ complex
Total Genus 53
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
207
structure length
207
Chain Sequence
AFLGDGGDVSFSTRGTQNWTVERLLQAHRQLEERGYVFVGYHGTFLEAAQSIVFGGVRARSQDLDAIWRGFYIAGDPALAYGYAQDQEPDARGRIRNGALLRVYVPRSSLPGFYRTSLTLAAPEAAGEVERLIGHPLPLRLDAITGPHEEGGRLETILGWPLAERTVVIPSAIPTDPRNVGGDLDPSSIPDKEQAISALPDYASQPG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Biosynthetic protein/transferase
molecule keywords Elongation factor 2
publication title The nature and character of the transition state for the ADP-ribosyltransferase reaction.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 53
structure length 207
sequence length 207
chains with identical sequence D, F
ec nomenclature ec 2.4.2.36: NAD(+)--diphthamide ADP-ribosyltransferase.
pdb deposition date 2007-10-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF09009 Exotox-A_cataly Exotoxin A catalytic
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.175.10 Alpha Beta Alpha-Beta Complex Diphtheria Toxin; domain 1 Diphtheria Toxin, domain 1 3b82B00
1ZM2B 3KI1A 1ZM4B 2Q5TA 3KI7A 1DTPA 3KI3A 4AE0A 1DDTA 1ZM3B 1ZM9B 3B78B 1IKPA 3NY6A 1IKQA 3KI0A 1AERA 3KI2A 1TOXA 4OW6A 1XDTT 3B82B 3KI5A 4AE1A 1SGKA 1MDTA 1F0LA 2Q6MA 2ZITB 3B8HB 3KI4A 1DMAA 3Q9OA 3ESSA 3KI6A 5I82A 1XK9A
chains in the Genus database with same CATH superfamily
1ZM2B 3KI1A 1ZM4B 2Q5TA 3KI7A 1DTPA 3KI3A 4AE0A 1DDTA 1ZM3B 1ZM9B 3B78B 1IKPA 3NY6A 1IKQA 3KI0A 1AERA 3KI2A 1TOXA 4OW6A 1XDTT 3B82B 3KI5A 4AE1A 1SGKA 1MDTA 1F0LA 2Q6MA 2ZITB 3B8HB 3KI4A 1DMAA 3Q9OA 3ESSA 3KI6A 5I82A 1XK9A
chains in the Genus database with same CATH topology
1ZM2B 3KI1A 1ZM4B 2Q5TA 3KI7A 1DTPA 3KI3A 4AE0A 1DDTA 1ZM3B 1ZM9B 3B78B 1IKPA 3NY6A 1IKQA 3KI0A 1AERA 3KI2A 1TOXA 4OW6A 1XDTT 3B82B 3KI5A 4AE1A 1SGKA 1MDTA 1F0LA 2Q6MA 2ZITB 3B8HB 3KI4A 1DMAA 3Q9OA 3ESSA 3KI6A 5I82A 1XK9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZM2 B;  3KI1 A;  1ZM4 B;  2Q5T A;  3KI7 A;  1DTP A;  3KI3 A;  4AE0 A;  1DDT A;  1ZM3 B;  1ZM9 B;  3B78 B;  1IKP A;  3NY6 A;  1IKQ A;  3KI0 A;  1AER A;  3KI2 A;  1TOX A;  4OW6 A;  1XDT T;  3B82 B;  3KI5 A;  4AE1 A;  1SGK A;  1MDT A;  1F0L A;  2Q6M A;  2ZIT B;  3B8H B;  3KI4 A;  1DMA A;  3Q9O A;  3ESS A;  3KI6 A;  5I82 A;  1XK9 A; 
#chains in the Genus database with same CATH topology
 1ZM2 B;  3KI1 A;  1ZM4 B;  2Q5T A;  3KI7 A;  1DTP A;  3KI3 A;  4AE0 A;  1DDT A;  1ZM3 B;  1ZM9 B;  3B78 B;  1IKP A;  3NY6 A;  1IKQ A;  3KI0 A;  1AER A;  3KI2 A;  1TOX A;  4OW6 A;  1XDT T;  3B82 B;  3KI5 A;  4AE1 A;  1SGK A;  1MDT A;  1F0L A;  2Q6M A;  2ZIT B;  3B8H B;  3KI4 A;  1DMA A;  3Q9O A;  3ESS A;  3KI6 A;  5I82 A;  1XK9 A; 
#chains in the Genus database with same CATH homology
 1ZM2 B;  3KI1 A;  1ZM4 B;  2Q5T A;  3KI7 A;  1DTP A;  3KI3 A;  4AE0 A;  1DDT A;  1ZM3 B;  1ZM9 B;  3B78 B;  1IKP A;  3NY6 A;  1IKQ A;  3KI0 A;  1AER A;  3KI2 A;  1TOX A;  4OW6 A;  1XDT T;  3B82 B;  3KI5 A;  4AE1 A;  1SGK A;  1MDT A;  1F0L A;  2Q6M A;  2ZIT B;  3B8H B;  3KI4 A;  1DMA A;  3Q9O A;  3ESS A;  3KI6 A;  5I82 A;  1XK9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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