3BAMA

Restriction endonuclease bamhi complex with dna and manganese ions (post-reactive complex)
Total Genus 64
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
64
sequence length
206
structure length
206
Chain Sequence
MEVEKEFITDEAKELLSKDKLIQQAYNEVKTSICSPIWPATSKTFTINNTEKNCNGVVPIKELCYTLLEDTYNWYREKPLDILKLEKKKGGPIDVYKEFIENSELKRVGMEFETGNISSAHRSMNKLLLGLKHGEIDLAIILMPIKQLAYYLTDRVTNFEELEPYFELTEGQPFIFIGFNAEAYNSNVPLIPKGSDGMSKRSIKKW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords DNA (5'-D(*TP*AP*TP*GP*GP*AP*TP*CP*CP*AP*TP*A)-3')
publication title The role of metals in catalysis by the restriction endonuclease BamHI.
pubmed doi rcsb
source organism Bacillus amyloliquefaciens
total genus 64
structure length 206
sequence length 206
chains with identical sequence B
ec nomenclature ec 3.1.21.4: Type II site-specific deoxyribonuclease.
pdb deposition date 1998-08-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02923 BamHI Restriction endonuclease BamHI
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.91.20 Alpha Beta 3-Layer(aba) Sandwich Restriction Endonuclease Restriction Endonuclease 3bamA00
1BHMA 1ESGA 1BAMA 2BAMA 3BAMA 1D2IA 1VRRA 1ES8A 2P0JA 3ODHA 1SDOA 1DFMA
chains in the Genus database with same CATH superfamily
4AVLA 4NFZA 5JHVA 3BM3A 2PFJA 4E5FA 3DVOA 5CCYA 4E5HA 2XI7A 2EWFA 5DBSA 3V1ZA 5D9JA 4AVGA 4E5GA 4E5JA 3V20A 5FDDA 5I13A 1DC1A 3DW9A 4R28A 4YYLA 4AWFA 4AWKA 4ZQQA 3CAEA 2XI5A 4CHCA 1BAMA 4ZHZA 3MQ6A 5D42A 1VRRA 5DESA 5DEBA 1FZRA 4OC8A 3A4KA 1ESGA 3DPGA 5JHTA 4E5LA 4E5EA 4AWGA 5D2OA 5CGVA 4AVQA 3WVPA 3N78A 5EGAA 5CZNA 2FQZA 1M0IA 3WVGA 3EBJA 3BAMA 2FOKA 1D2IA 3N7BA 3WVKA 3V21A 1M0DA 2P14A 3ODHA 1FOKA 2BAMA 3HW6A 5D4GA 4CGSA 1ES8A 2E52A 3HW5A 1CFRA 1BHMA 3MQYA 3HW3A 5D8UA 5FDGA 4E5IA 4AWMA 4CGXA 3HW4A 3WVIA 1SDOA 1DFMA 2GB7A 5CL0A 2P0JA 4F0PA 4AWHA 3WVHA 4ZI0A 4F0QA 1KNVA
chains in the Genus database with same CATH topology
4AVLA 4NFZA 5JHVA 3BM3A 2PFJA 4E5FA 3DVOA 5CCYA 4E5HA 2XI7A 2EWFA 5DBSA 3V1ZA 5D9JA 4AVGA 4E5GA 4E5JA 3V20A 5FDDA 5I13A 1DC1A 3DW9A 4R28A 4YYLA 4AWFA 4AWKA 4ZQQA 3CAEA 2XI5A 4CHCA 1BAMA 4ZHZA 3MQ6A 5D42A 1VRRA 5DESA 5DEBA 1FZRA 4OC8A 3A4KA 1ESGA 3DPGA 5JHTA 4E5LA 4E5EA 4AWGA 5D2OA 5CGVA 4AVQA 3WVPA 3N78A 5EGAA 5CZNA 2FQZA 1M0IA 3WVGA 3EBJA 3BAMA 2FOKA 1D2IA 3N7BA 3WVKA 3V21A 1M0DA 2P14A 3ODHA 1FOKA 2BAMA 3HW6A 5D4GA 4CGSA 1ES8A 2E52A 3HW5A 1CFRA 1BHMA 3MQYA 3HW3A 5D8UA 5FDGA 4E5IA 4AWMA 4CGXA 3HW4A 3WVIA 1SDOA 1DFMA 2GB7A 5CL0A 2P0JA 4F0PA 4AWHA 3WVHA 4ZI0A 4F0QA 1KNVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BHM A;  1ESG A;  1BAM A;  2BAM A;  3BAM A;  1D2I A;  1VRR A;  1ES8 A;  2P0J A;  3ODH A;  1SDO A;  1DFM A; 
#chains in the Genus database with same CATH topology
 4AVL A;  4NFZ A;  5JHV A;  3BM3 A;  2PFJ A;  4E5F A;  3DVO A;  5CCY A;  4E5H A;  2XI7 A;  2EWF A;  5DBS A;  3V1Z A;  5D9J A;  4AVG A;  4E5G A;  4E5J A;  3V20 A;  5FDD A;  5I13 A;  1DC1 A;  3DW9 A;  4R28 A;  4YYL A;  4AWF A;  4AWK A;  4ZQQ A;  3CAE A;  2XI5 A;  4CHC A;  1BAM A;  4ZHZ A;  3MQ6 A;  5D42 A;  1VRR A;  5DES A;  5DEB A;  1FZR A;  4OC8 A;  3A4K A;  1ESG A;  3DPG A;  5JHT A;  4E5L A;  4E5E A;  4AWG A;  5D2O A;  5CGV A;  4AVQ A;  3WVP A;  3N78 A;  5EGA A;  5CZN A;  2FQZ A;  1M0I A;  3WVG A;  3EBJ A;  3BAM A;  2FOK A;  1D2I A;  3N7B A;  3WVK A;  3V21 A;  1M0D A;  2P14 A;  3ODH A;  1FOK A;  2BAM A;  3HW6 A;  5D4G A;  4CGS A;  1ES8 A;  2E52 A;  3HW5 A;  1CFR A;  1BHM A;  3MQY A;  3HW3 A;  5D8U A;  5FDG A;  4E5I A;  4AWM A;  4CGX A;  3HW4 A;  3WVI A;  1SDO A;  1DFM A;  2GB7 A;  5CL0 A;  2P0J A;  4F0P A;  4AWH A;  3WVH A;  4ZI0 A;  4F0Q A;  1KNV A; 
#chains in the Genus database with same CATH homology
 4AVL A;  4NFZ A;  5JHV A;  3BM3 A;  2PFJ A;  4E5F A;  3DVO A;  5CCY A;  4E5H A;  2XI7 A;  2EWF A;  5DBS A;  3V1Z A;  5D9J A;  4AVG A;  4E5G A;  4E5J A;  3V20 A;  5FDD A;  5I13 A;  1DC1 A;  3DW9 A;  4R28 A;  4YYL A;  4AWF A;  4AWK A;  4ZQQ A;  3CAE A;  2XI5 A;  4CHC A;  1BAM A;  4ZHZ A;  3MQ6 A;  5D42 A;  1VRR A;  5DES A;  5DEB A;  1FZR A;  4OC8 A;  3A4K A;  1ESG A;  3DPG A;  5JHT A;  4E5L A;  4E5E A;  4AWG A;  5D2O A;  5CGV A;  4AVQ A;  3WVP A;  3N78 A;  5EGA A;  5CZN A;  2FQZ A;  1M0I A;  3WVG A;  3EBJ A;  3BAM A;  2FOK A;  1D2I A;  3N7B A;  3WVK A;  3V21 A;  1M0D A;  2P14 A;  3ODH A;  1FOK A;  2BAM A;  3HW6 A;  5D4G A;  4CGS A;  1ES8 A;  2E52 A;  3HW5 A;  1CFR A;  1BHM A;  3MQY A;  3HW3 A;  5D8U A;  5FDG A;  4E5I A;  4AWM A;  4CGX A;  3HW4 A;  3WVI A;  1SDO A;  1DFM A;  2GB7 A;  5CL0 A;  2P0J A;  4F0P A;  4AWH A;  3WVH A;  4ZI0 A;  4F0Q A;  1KNV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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