3BEYA

Crystal structure of the protein o27018 from methanobacterium thermoautotrophicum. northeast structural genomics consortium target tt217
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
89
structure length
89
Chain Sequence
RFLEELPEVAESFKNFREAVRSEGKLTEREKLLISVACSVAVRCDACTRRHAEEALEAGITEGELAEAAAVAALIRAGSAMNTASAIFR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Conserved protein O27018
publication title Crystal structure of the protein O27018 from Methanobacterium thermoautotrophicum.
rcsb
source organism Methanothermobacter thermautotrophicus
molecule tags Structural genomics, unknown function
total genus 34
structure length 89
sequence length 89
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2007-11-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02627 CMD Carboxymuconolactone decarboxylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3beyA00
2QEUA 2AF7A 2OYOA 3LVYA 5DIKA 1GU9A 1LW1A 3C1LA 5DIPA 1ME5A 2PFXA 3BEYA 1KNCA 2GMYA 2OUWA 2CWQA 2Q0TA 3D7IA 4G9QA 2PRRA 2O4DA 1P8CA 1VKEA 2IJCA
chains in the Genus database with same CATH superfamily
3AA0A 2QEUA 2AF7A 2OYOA 3LVYA 5DIKA 1GU9A 1LW1A 3C1LA 5DIPA 1IZNA 1ME5A 2JN8A 2PFXA 3AAAA 3BEYA 3AAEA 1KNCA 2KZ7A 2GMYA 3AA7A 2OUWA 4AKRA 3AA1A 3LK41 2CWQA 2KXPA 3LK2A 2Q0TA 5AFUK 2ES9A 3D7IA 4G9QA 2PRRA 3AA6A 5ADXK 2O4DA 1P8CA 1VKEA 3LK3A 2IJCA
chains in the Genus database with same CATH topology
3AA0A 2QEUA 2AF7A 2OYOA 3LVYA 5DIKA 1GU9A 1LW1A 3C1LA 5DIPA 1IZNA 1ME5A 2JN8A 2PFXA 3AAAA 3BEYA 3AAEA 1KNCA 2KZ7A 2GMYA 3AA7A 2OUWA 4AKRA 3AA1A 3LK41 2CWQA 2KXPA 3LK2A 2Q0TA 5AFUK 2ES9A 3D7IA 4G9QA 2PRRA 3AA6A 5ADXK 2O4DA 1P8CA 1VKEA 3LK3A 2IJCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QEU A;  2AF7 A;  2OYO A;  3LVY A;  5DIK A;  1GU9 A;  1LW1 A;  3C1L A;  5DIP A;  1ME5 A;  2PFX A;  3BEY A;  1KNC A;  2GMY A;  2OUW A;  2CWQ A;  2Q0T A;  3D7I A;  4G9Q A;  2PRR A;  2O4D A;  1P8C A;  1VKE A;  2IJC A; 
#chains in the Genus database with same CATH topology
 3AA0 A;  2QEU A;  2AF7 A;  2OYO A;  3LVY A;  5DIK A;  1GU9 A;  1LW1 A;  3C1L A;  5DIP A;  1IZN A;  1ME5 A;  2JN8 A;  2PFX A;  3AAA A;  3BEY A;  3AAE A;  1KNC A;  2KZ7 A;  2GMY A;  3AA7 A;  2OUW A;  4AKR A;  3AA1 A;  3LK4 1;  2CWQ A;  2KXP A;  3LK2 A;  2Q0T A;  5AFU K;  2ES9 A;  3D7I A;  4G9Q A;  2PRR A;  3AA6 A;  5ADX K;  2O4D A;  1P8C A;  1VKE A;  3LK3 A;  2IJC A; 
#chains in the Genus database with same CATH homology
 3AA0 A;  2QEU A;  2AF7 A;  2OYO A;  3LVY A;  5DIK A;  1GU9 A;  1LW1 A;  3C1L A;  5DIP A;  1IZN A;  1ME5 A;  2JN8 A;  2PFX A;  3AAA A;  3BEY A;  3AAE A;  1KNC A;  2KZ7 A;  2GMY A;  3AA7 A;  2OUW A;  4AKR A;  3AA1 A;  3LK4 1;  2CWQ A;  2KXP A;  3LK2 A;  2Q0T A;  5AFU K;  2ES9 A;  3D7I A;  4G9Q A;  2PRR A;  3AA6 A;  5ADX K;  2O4D A;  1P8C A;  1VKE A;  3LK3 A;  2IJC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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