3BEYA

Crystal structure of the protein o27018 from methanobacterium thermoautotrophicum. northeast structural genomics consortium target tt217
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
89
structure length
89
Chain Sequence
RFLEELPEVAESFKNFREAVRSEGKLTEREKLLISVACSVAVRCDACTRRHAEEALEAGITEGELAEAAAVAALIRAGSAMNTASAIFR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of the protein O27018 from Methanobacterium thermoautotrophicum.
rcsb
molecule tags Structural genomics, unknown function
source organism Methanothermobacter thermautotrophicus
molecule keywords Conserved protein O27018
total genus 34
structure length 89
sequence length 89
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2007-11-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02627 CMD Carboxymuconolactone decarboxylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3beyA00
1P8CA 2CWQA 2IJCA 3BEYA 1KNCA 1LW1A 2PFXA 2QEUA 3LVYA 3C1LA 1VKEA 3D7IA 2OYOA 1GU9A 5DIPA 5DIKA 2O4DA 2OUWA 2Q0TA 2GMYA 2PRRA 4G9QA 2AF7A 1ME5A
chains in the Genus database with same CATH superfamily
1P8CA 2CWQA 2IJCA 5AFUK 3LK2A 3BEYA 1KNCA 1LW1A 2PFXA 2QEUA 3LVYA 5ADXK 3AA6A 4AKRA 1VKEA 3C1LA 3D7IA 2OYOA 1GU9A 3AAEA 2KXPA 3AAAA 3AA7A 5DIPA 1IZNA 2ES9A 2JN8A 5DIKA 2O4DA 2OUWA 2Q0TA 3AA1A 3AA0A 3LK3A 3LK41 2KZ7A 2GMYA 2PRRA 4G9QA 2AF7A 1ME5A
chains in the Genus database with same CATH topology
1P8CA 2CWQA 2IJCA 5AFUK 3LK2A 3BEYA 1KNCA 1LW1A 2PFXA 2QEUA 3LVYA 5ADXK 3AA6A 4AKRA 1VKEA 3C1LA 3D7IA 2OYOA 1GU9A 3AAEA 2KXPA 3AAAA 3AA7A 5DIPA 1IZNA 2ES9A 2JN8A 5DIKA 2O4DA 2OUWA 2Q0TA 3AA1A 3AA0A 3LK3A 3LK41 2KZ7A 2GMYA 2PRRA 4G9QA 2AF7A 1ME5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1P8C A;  2CWQ A;  2IJC A;  3BEY A;  1KNC A;  1LW1 A;  2PFX A;  2QEU A;  3LVY A;  3C1L A;  1VKE A;  3D7I A;  2OYO A;  1GU9 A;  5DIP A;  5DIK A;  2O4D A;  2OUW A;  2Q0T A;  2GMY A;  2PRR A;  4G9Q A;  2AF7 A;  1ME5 A; 
#chains in the Genus database with same CATH topology
 1P8C A;  2CWQ A;  2IJC A;  5AFU K;  3LK2 A;  3BEY A;  1KNC A;  1LW1 A;  2PFX A;  2QEU A;  3LVY A;  5ADX K;  3AA6 A;  4AKR A;  1VKE A;  3C1L A;  3D7I A;  2OYO A;  1GU9 A;  3AAE A;  2KXP A;  3AAA A;  3AA7 A;  5DIP A;  1IZN A;  2ES9 A;  2JN8 A;  5DIK A;  2O4D A;  2OUW A;  2Q0T A;  3AA1 A;  3AA0 A;  3LK3 A;  3LK4 1;  2KZ7 A;  2GMY A;  2PRR A;  4G9Q A;  2AF7 A;  1ME5 A; 
#chains in the Genus database with same CATH homology
 1P8C A;  2CWQ A;  2IJC A;  5AFU K;  3LK2 A;  3BEY A;  1KNC A;  1LW1 A;  2PFX A;  2QEU A;  3LVY A;  5ADX K;  3AA6 A;  4AKR A;  1VKE A;  3C1L A;  3D7I A;  2OYO A;  1GU9 A;  3AAE A;  2KXP A;  3AAA A;  3AA7 A;  5DIP A;  1IZN A;  2ES9 A;  2JN8 A;  5DIK A;  2O4D A;  2OUW A;  2Q0T A;  3AA1 A;  3AA0 A;  3LK3 A;  3LK4 1;  2KZ7 A;  2GMY A;  2PRR A;  4G9Q A;  2AF7 A;  1ME5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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