3BEYA

Crystal structure of the protein o27018 from methanobacterium thermoautotrophicum. northeast structural genomics consortium target tt217
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
89
structure length
89
Chain Sequence
b'RFLEELPEVAESFKNFREAVRSEGKLTEREKLLISVACSVAVRCDACTRRHAEEALEAGITEGELAEAAAVAALIRAGSAMNTASAIFR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Conserved protein O27018
publication title Crystal structure of the protein O27018 from Methanobacterium thermoautotrophicum.
rcsb
source organism Methanothermobacter thermautotrophicus
molecule tags Structural genomics, unknown function
total genus 34
structure length 89
sequence length 89
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2007-11-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02627 CMD Carboxymuconolactone decarboxylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3beyA00
5DIKA 2PRRA 1P8CA 3LVYA 1KNCA 3C1LA 1VKEA 2O4DA 2OYOA 5DIPA 2PFXA 1ME5A 2AF7A 3D7IA 2IJCA 4G9QA 2Q0TA 1LW1A 2QEUA 1GU9A 2CWQA 2OUWA 2GMYA 3BEYA
chains in the Genus database with same CATH superfamily
1IZNA 2KZ7A 3AA0A 5ADXK 5DIKA 2PRRA 1P8CA 3LVYA 1KNCA 3C1LA 2ES9A 4AKRA 1VKEA 3LK2A 3LK41 2O4DA 2OYOA 5DIPA 2PFXA 3AA6A 1ME5A 2KXPA 2AF7A 3AAAA 3AA1A 3D7IA 2IJCA 4G9QA 2Q0TA 3LK3A 1LW1A 3AA7A 2QEUA 5AFUK 1GU9A 2CWQA 2OUWA 2JN8A 3AAEA 2GMYA 3BEYA
chains in the Genus database with same CATH topology
1IZNA 2KZ7A 3AA0A 5ADXK 5DIKA 2PRRA 1P8CA 3LVYA 1KNCA 3C1LA 2ES9A 4AKRA 1VKEA 3LK2A 3LK41 2O4DA 2OYOA 5DIPA 2PFXA 3AA6A 1ME5A 2KXPA 2AF7A 3AAAA 3AA1A 3D7IA 2IJCA 4G9QA 2Q0TA 3LK3A 1LW1A 3AA7A 2QEUA 5AFUK 1GU9A 2CWQA 2OUWA 2JN8A 3AAEA 2GMYA 3BEYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DIK A;  2PRR A;  1P8C A;  3LVY A;  1KNC A;  3C1L A;  1VKE A;  2O4D A;  2OYO A;  5DIP A;  2PFX A;  1ME5 A;  2AF7 A;  3D7I A;  2IJC A;  4G9Q A;  2Q0T A;  1LW1 A;  2QEU A;  1GU9 A;  2CWQ A;  2OUW A;  2GMY A;  3BEY A; 
#chains in the Genus database with same CATH topology
 1IZN A;  2KZ7 A;  3AA0 A;  5ADX K;  5DIK A;  2PRR A;  1P8C A;  3LVY A;  1KNC A;  3C1L A;  2ES9 A;  4AKR A;  1VKE A;  3LK2 A;  3LK4 1;  2O4D A;  2OYO A;  5DIP A;  2PFX A;  3AA6 A;  1ME5 A;  2KXP A;  2AF7 A;  3AAA A;  3AA1 A;  3D7I A;  2IJC A;  4G9Q A;  2Q0T A;  3LK3 A;  1LW1 A;  3AA7 A;  2QEU A;  5AFU K;  1GU9 A;  2CWQ A;  2OUW A;  2JN8 A;  3AAE A;  2GMY A;  3BEY A; 
#chains in the Genus database with same CATH homology
 1IZN A;  2KZ7 A;  3AA0 A;  5ADX K;  5DIK A;  2PRR A;  1P8C A;  3LVY A;  1KNC A;  3C1L A;  2ES9 A;  4AKR A;  1VKE A;  3LK2 A;  3LK4 1;  2O4D A;  2OYO A;  5DIP A;  2PFX A;  3AA6 A;  1ME5 A;  2KXP A;  2AF7 A;  3AAA A;  3AA1 A;  3D7I A;  2IJC A;  4G9Q A;  2Q0T A;  3LK3 A;  1LW1 A;  3AA7 A;  2QEU A;  5AFU K;  1GU9 A;  2CWQ A;  2OUW A;  2JN8 A;  3AAE A;  2GMY A;  3BEY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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