3BGEA

Crystal structure of the c-terminal fragment of aaa+atpase from haemophilus influenzae
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
184
structure length
163
Chain Sequence
GDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAIIYLSVAPKSNAVYTAFNTAKQQAKDLPDYDVPPHLRNAPTNLAGENYFPPELKDTQYYFPTNRGMEIQIKEKLERLR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Nucleotide binding protein
molecule keywords Predicted ATPase
publication title Crystal structure of the C-terminal fragment of AAA+ATPase from Haemophilus influenzae.
rcsb
source organism Haemophilus influenzae
total genus 57
structure length 163
sequence length 184
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12002 MgsA_C MgsA AAA+ ATPase C terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3710.10 Mainly Alpha Orthogonal Bundle post-AAA+ oligomerization domain-like DNA polymerase III clamp loader subunits, C-terminal domain 3bgeA02
1.20.272.10 Mainly Alpha Up-down Bundle Zinc Finger, Delta Prime; domain 3 Zinc Finger, Delta Prime; domain 3 3bgeA01
3ZH9B 3GLHE 3U5ZB 1A5TA 1SXJD 3GLFA 1JR3E 1SXJB 1XXHE 3GLHA 2CHQA 3GLGE 2GNOA 3BGEA 1JR3A 1XXHA 3GLIE 2CHVA 3GLGA 3GLFB 3PVSA 1JR3D 3GLHB 3U61B 3GLIA 3U60B 1JQJC 1SXJE 1XXHB 1IQPA 3GLIB 3GLGB 2R9GA 1SXJA 3CTDA 2QW6A 1SXJC 3GLFE
chains in the Genus database with same CATH superfamily
3ZH9B 3RC3A 3RC8A 3GLHE 3U5ZB 1A5TA 1SXJD 3ES5A 3GLFA 1JR3E 1SXJB 1XXHE 3GLHA 3U61A 2CHQA 3U60A 3GLGE 2GNOA 3BGEA 1JR3A 1MW5A 1XXHA 3GLIE 2CHVA 3GLGA 3GLFB 3PVSA 1JR3D 3GLHB 3U61B 3GLIA 3U60B 1JQJC 1SXJE 1XXHB 3U5ZA 1IQPA 3GLIB 3GLGB 4CHDA 2R9GA 1SXJA 3CTDA 2QW6A 1SXJC 3GLFE
chains in the Genus database with same CATH topology
3ZH9B 3RC3A 3RC8A 3GLHE 3U5ZB 1A5TA 1SXJD 3ES5A 3GLFA 1JR3E 1SXJB 1XXHE 3GLHA 3U61A 2CHQA 3U60A 3GLGE 2GNOA 3BGEA 1JR3A 1MW5A 1XXHA 3GLIE 2CHVA 3GLGA 3GLFB 3PVSA 1JR3D 3GLHB 3U61B 3GLIA 3U60B 1JQJC 1SXJE 1XXHB 3U5ZA 1IQPA 3GLIB 3GLGB 4CHDA 2R9GA 1SXJA 3CTDA 2QW6A 1SXJC 3GLFE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ZH9 B;  3GLH E;  3U5Z B;  1A5T A;  1SXJ D;  3GLF A;  1JR3 E;  1SXJ B;  1XXH E;  3GLH A;  2CHQ A;  3GLG E;  2GNO A;  3BGE A;  1JR3 A;  1XXH A;  3GLI E;  2CHV A;  3GLG A;  3GLF B;  3PVS A;  1JR3 D;  3GLH B;  3U61 B;  3GLI A;  3U60 B;  1JQJ C;  1SXJ E;  1XXH B;  1IQP A;  3GLI B;  3GLG B;  2R9G A;  1SXJ A;  3CTD A;  2QW6 A;  1SXJ C;  3GLF E; 
#chains in the Genus database with same CATH topology
 3ZH9 B;  3RC3 A;  3RC8 A;  3GLH E;  3U5Z B;  1A5T A;  1SXJ D;  3ES5 A;  3GLF A;  1JR3 E;  1SXJ B;  1XXH E;  3GLH A;  3U61 A;  2CHQ A;  3U60 A;  3GLG E;  2GNO A;  3BGE A;  1JR3 A;  1MW5 A;  1XXH A;  3GLI E;  2CHV A;  3GLG A;  3GLF B;  3PVS A;  1JR3 D;  3GLH B;  3U61 B;  3GLI A;  3U60 B;  1JQJ C;  1SXJ E;  1XXH B;  3U5Z A;  1IQP A;  3GLI B;  3GLG B;  4CHD A;  2R9G A;  1SXJ A;  3CTD A;  2QW6 A;  1SXJ C;  3GLF E; 
#chains in the Genus database with same CATH homology
 3ZH9 B;  3RC3 A;  3RC8 A;  3GLH E;  3U5Z B;  1A5T A;  1SXJ D;  3ES5 A;  3GLF A;  1JR3 E;  1SXJ B;  1XXH E;  3GLH A;  3U61 A;  2CHQ A;  3U60 A;  3GLG E;  2GNO A;  3BGE A;  1JR3 A;  1MW5 A;  1XXH A;  3GLI E;  2CHV A;  3GLG A;  3GLF B;  3PVS A;  1JR3 D;  3GLH B;  3U61 B;  3GLI A;  3U60 B;  1JQJ C;  1SXJ E;  1XXH B;  3U5Z A;  1IQP A;  3GLI B;  3GLG B;  4CHD A;  2R9G A;  1SXJ A;  3CTD A;  2QW6 A;  1SXJ C;  3GLF E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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