3BKQX

Structure of the p368g mutant of pmm/pgm in complex with its substrate
Total Genus 164
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
164
sequence length
458
structure length
457
Chain Sequence
APTLPASIFRAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVGMVPTPVLYYAANVLEGKSGVMLTGHNPPDYNGFKIVVAGETLANEQIQALRERIEKNDLASGVGSVEQVDILPRYFKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGRPVMWKTGHSLIKKKMKETGALLAGEMSGHVFFKERWFGFDDGIYSAARLLEILSQDQRDSEHVFSAFGSDISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLVLRFEADTEEELERIKTVFRNQLKAVDSSLPVPF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Phosphomannomutase/phosphoglucomutase
publication title Backbone flexibility, conformational change, and catalysis in a phosphohexomutase from Pseudomonas aeruginosa.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
molecule tags Isomerase
total genus 164
structure length 457
sequence length 458
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 2007-12-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
X PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
X PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
X PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 3bkqX04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 3bkqX03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 3bkqX01
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 3bkqX02
1TUOA 2Z0FA 1KFIA 2H4LX 2FKFA 1VKLA 5JMVD 5BMNA 2EHPA 2FUVA 1K2YX 3ENCA 4IL8A 5F9CA 2EIUA 4QG5A 5HSHA 3PDKA 4WX8A 5EPCA 2FKMX 3C04A 1K35A 1WJWA 1PCJX 1C47A 1JDYA 1KFQA 1WQAA 3I3WA 3PMGA 4BJUA 1LXTA 2DKCA 3BKQX 3ENOC 5BMPA 3NA5A 1PCMX 3RSMA 1P5DX 5KL0A 2DKAA 3OLPA 2H5AX 2F7LA 2DKDA 4WXAA 5JN5A 1P5GX 2JPIA 3UW2A 4HJHA 1C4GA 4MRQA
chains in the Genus database with same CATH superfamily
4ROEB 1KY6A 3KTUA 2NLVA 2JOIA 3KRMA 5JMVD 1QN7A 2FUVA 2NOZA 2EIUA 2IV8A 1VTLE 4EAKA 2FGTA 1KYDA 2MZ8A 4CFFA 1WJWA 2HZSA 2O3OA 1C47A 2OOXA 3F10A 3HS9A 5IYBP 1JFIC 4BJUA 1KY7A 1J3MA 1R4XA 2DKCA 2V92A 2D0AA 1QNEA 5BMPA 2QR1A 1VOKA 1PCMX 2HKPA 3NA5A 3OCIA 3RSMA 3ASMA 2D0CA 1YQLA 3I0XA 2JHNA 1N3AA 2QRCA 1EUVA 5KL0A 1Q9UA 2H5AX 4EJZA 2DKDA 4WXAA 3OH6A 1YTBA 4EALA 1M5Q1 1D3UA 4HJHA 1VTOA 1UL7A 4PY5A 1TUOA 1PZDA 2H4LX 1KYFA 4ROCB 1VKLA 2EHPA 4EAJA 1YQKA 3ENCA 4IL8A 1W80A 3CVTA 3OSMA 4QG5A 5HSHA 3TDHA 1TBPA 5EPCA 1KO9A 2QRDA 3C04A 2Y8LA 1VOLB 1KFQA 1WQAA 3I3WA 3CWAA 4B0AA 2VJ0A 1HU0A 1QNCA 4WZSD 1TBAB 1NH2A 2G30A 3EIKA 1C9BB 2MJ7A 1YTFA 2HL8A 1XSZA 4EAGA 3N89A 2YH5A 2Y8QA 1LWVA 3VN5A 3TE5A 1B9KA 1P5GX 3OGDA 3IH7A 2JPIA 1N3CA 4Q11A 2OOYA 1QN8A 1QN6A 2HZMA 1QTPA 1C4GA 2NOBA 4MRQA 2LAEA 1FN7A 2Z0FA 1LWYA 1KFIA 1YQMA 2FKFA 1NVPA 2V9JA 3HS8A 1AISA 1QTSA 1T6AA 4WX8A 1YQRA 2FKMX 1JDYA 3ULXA 2I5WA 3F0ZA 4EJYA 2NOIA 4DULA 2HL9A 2YA3A 3RPJA 3ENOC 3OSEA 1MP9A 1V5SA 2NOHA 2JHJA 2NOEA 3CWSA 2ZFDB 1M3HA 3OLPA 1RM1A 2F7LA 2R5XA 3DPUA 2IV9A 1QNBA 2Z8UA 3CW7A 3SNSA 2EHBD 4RODB 2V8QA 2NVMA 3D7QA 4C7PA 5BMNA 5F9CA 1K2YX 4EAIA 2NOLA 1DIZA 1KYUA 3PDKA 1QN9A 2NOFA 3I0WA 1N39A 1K35A 3DPTA 1PCJX 1E42A 1PVSA 3PMGA 4D7QA 1LXTA 3OH9A 3BKQX 3OC3C 1QN4A 2NWVA 2QREA 3T4NA 2D0BA 1EBMA 4I8OA 4TPSA 3CWTA 5IYCP 1UT4A 1UT7A 3EAYA 3OSTA 1M3QA 1P5DX 2PWWA 2XHIA 1QN5A 1LWWA 4D7RA 3CWUA 2DKAA 5AN4A 5IYDP 2QLVA 5JN5A 1CDWA 1QN3A 1TGHA 3UW2A 1PCZA 3CVSA 1MPGA 1QNAA 1NGMA 3D4VA 3H1ZA
chains in the Genus database with same CATH topology
1TUOA 2Z0FA 1KFIA 2H4LX 2FKFA 1VKLA 5JMVD 5BMNA 2EHPA 2FUVA 1K2YX 3ENCA 4IL8A 5F9CA 2EIUA 4QG5A 5HSHA 3PDKA 4WX8A 5EPCA 2FKMX 3C04A 1K35A 1WJWA 1PCJX 1C47A 1JDYA 1KFQA 1WQAA 3I3WA 3PMGA 4BJUA 1LXTA 2DKCA 3BKQX 3ENOC 5BMPA 3NA5A 1PCMX 3RSMA 1P5DX 5KL0A 2DKAA 3OLPA 2H5AX 2F7LA 2DKDA 4WXAA 5JN5A 1P5GX 2JPIA 3UW2A 4HJHA 1C4GA 4MRQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TUO A;  2Z0F A;  1KFI A;  2H4L X;  2FKF A;  1VKL A;  5JMV D;  5BMN A;  2EHP A;  2FUV A;  1K2Y X;  3ENC A;  4IL8 A;  5F9C A;  2EIU A;  4QG5 A;  5HSH A;  3PDK A;  4WX8 A;  5EPC A;  2FKM X;  3C04 A;  1K35 A;  1WJW A;  1PCJ X;  1C47 A;  1JDY A;  1KFQ A;  1WQA A;  3I3W A;  3PMG A;  4BJU A;  1LXT A;  2DKC A;  3BKQ X;  3ENO C;  5BMP A;  3NA5 A;  1PCM X;  3RSM A;  1P5D X;  5KL0 A;  2DKA A;  3OLP A;  2H5A X;  2F7L A;  2DKD A;  4WXA A;  5JN5 A;  1P5G X;  2JPI A;  3UW2 A;  4HJH A;  1C4G A;  4MRQ A; 
#chains in the Genus database with same CATH topology
 4ROE B;  1KY6 A;  3KTU A;  2NLV A;  2JOI A;  3KRM A;  5JMV D;  1QN7 A;  2FUV A;  2NOZ A;  2EIU A;  2IV8 A;  1VTL E;  4EAK A;  2FGT A;  1KYD A;  2MZ8 A;  4CFF A;  1WJW A;  2HZS A;  2O3O A;  1C47 A;  2OOX A;  3F10 A;  3HS9 A;  5IYB P;  1JFI C;  4BJU A;  1KY7 A;  1J3M A;  1R4X A;  2DKC A;  2V92 A;  2D0A A;  1QNE A;  5BMP A;  2QR1 A;  1VOK A;  1PCM X;  2HKP A;  3NA5 A;  3OCI A;  3RSM A;  3ASM A;  2D0C A;  1YQL A;  3I0X A;  2JHN A;  1N3A A;  2QRC A;  1EUV A;  5KL0 A;  1Q9U A;  2H5A X;  4EJZ A;  2DKD A;  4WXA A;  3OH6 A;  1YTB A;  4EAL A;  1M5Q 1;  1D3U A;  4HJH A;  1VTO A;  1UL7 A;  4PY5 A;  1TUO A;  1PZD A;  2H4L X;  1KYF A;  4ROC B;  1VKL A;  2EHP A;  4EAJ A;  1YQK A;  3ENC A;  4IL8 A;  1W80 A;  3CVT A;  3OSM A;  4QG5 A;  5HSH A;  3TDH A;  1TBP A;  5EPC A;  1KO9 A;  2QRD A;  3C04 A;  2Y8L A;  1VOL B;  1KFQ A;  1WQA A;  3I3W A;  3CWA A;  4B0A A;  2VJ0 A;  1HU0 A;  1QNC A;  4WZS D;  1TBA B;  1NH2 A;  2G30 A;  3EIK A;  1C9B B;  2MJ7 A;  1YTF A;  2HL8 A;  1XSZ A;  4EAG A;  3N89 A;  2YH5 A;  2Y8Q A;  1LWV A;  3VN5 A;  3TE5 A;  1B9K A;  1P5G X;  3OGD A;  3IH7 A;  2JPI A;  1N3C A;  4Q11 A;  2OOY A;  1QN8 A;  1QN6 A;  2HZM A;  1QTP A;  1C4G A;  2NOB A;  4MRQ A;  2LAE A;  1FN7 A;  2Z0F A;  1LWY A;  1KFI A;  1YQM A;  2FKF A;  1NVP A;  2V9J A;  3HS8 A;  1AIS A;  1QTS A;  1T6A A;  4WX8 A;  1YQR A;  2FKM X;  1JDY A;  3ULX A;  2I5W A;  3F0Z A;  4EJY A;  2NOI A;  4DUL A;  2HL9 A;  2YA3 A;  3RPJ A;  3ENO C;  3OSE A;  1MP9 A;  1V5S A;  2NOH A;  2JHJ A;  2NOE A;  3CWS A;  2ZFD B;  1M3H A;  3OLP A;  1RM1 A;  2F7L A;  2R5X A;  3DPU A;  2IV9 A;  1QNB A;  2Z8U A;  3CW7 A;  3SNS A;  2EHB D;  4ROD B;  2V8Q A;  2NVM A;  3D7Q A;  4C7P A;  5BMN A;  5F9C A;  1K2Y X;  4EAI A;  2NOL A;  1DIZ A;  1KYU A;  3PDK A;  1QN9 A;  2NOF A;  3I0W A;  1N39 A;  1K35 A;  3DPT A;  1PCJ X;  1E42 A;  1PVS A;  3PMG A;  4D7Q A;  1LXT A;  3OH9 A;  3BKQ X;  3OC3 C;  1QN4 A;  2NWV A;  2QRE A;  3T4N A;  2D0B A;  1EBM A;  4I8O A;  4TPS A;  3CWT A;  5IYC P;  1UT4 A;  1UT7 A;  3EAY A;  3OST A;  1M3Q A;  1P5D X;  2PWW A;  2XHI A;  1QN5 A;  1LWW A;  4D7R A;  3CWU A;  2DKA A;  5AN4 A;  5IYD P;  2QLV A;  5JN5 A;  1CDW A;  1QN3 A;  1TGH A;  3UW2 A;  1PCZ A;  3CVS A;  1MPG A;  1QNA A;  1NGM A;  3D4V A;  3H1Z A; 
#chains in the Genus database with same CATH homology
 1TUO A;  2Z0F A;  1KFI A;  2H4L X;  2FKF A;  1VKL A;  5JMV D;  5BMN A;  2EHP A;  2FUV A;  1K2Y X;  3ENC A;  4IL8 A;  5F9C A;  2EIU A;  4QG5 A;  5HSH A;  3PDK A;  4WX8 A;  5EPC A;  2FKM X;  3C04 A;  1K35 A;  1WJW A;  1PCJ X;  1C47 A;  1JDY A;  1KFQ A;  1WQA A;  3I3W A;  3PMG A;  4BJU A;  1LXT A;  2DKC A;  3BKQ X;  3ENO C;  5BMP A;  3NA5 A;  1PCM X;  3RSM A;  1P5D X;  5KL0 A;  2DKA A;  3OLP A;  2H5A X;  2F7L A;  2DKD A;  4WXA A;  5JN5 A;  1P5G X;  2JPI A;  3UW2 A;  4HJH A;  1C4G A;  4MRQ A; 
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similar chains in the pdb database (?% sequence similarity)

 
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