3BL4A

Crystal structure of a protein with unknown function (arth_0117) from arthrobacter sp. fb24 at 2.20 a resolution
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
120
structure length
120
Chain Sequence
DSEVGTEAGLTLGGDGILRLTWPRGAAITAADAERAMLRVNQLCGDDRHPMLVDMATTADVSRGARAVFGRPCQASRIALLGSSPVDRVLANFFLGINAVPCPTKFFTSERDALTWLALT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
molecule keywords Uncharacterized protein
publication title Crystal structure of uncharacterized protein (YP_829618.1) from Arthrobacter sp. FB24 at 2.20 A resolution
rcsb
source organism Arthrobacter sp.
total genus 28
structure length 120
sequence length 120
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-12-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11964 SpoIIAA-like SpoIIAA-like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.970.30 Alpha Beta 3-Layer(aba) Sandwich Ribonuclease HI; Chain A yp_829618.1 like domains 3bl4A02
3.40.1680.10 Alpha Beta 3-Layer(aba) Sandwich yp_829618.1 fold yp_829618.1 domain like 3bl4A01
3BL4A
chains in the Genus database with same CATH superfamily
1OAOC 3I04M 1MJGM 1RU3A 3I01M 3GITA 3PMQA 1QHKA 3BL4A 3BSUA 3DOAA 5H3XA 2Z8YM
chains in the Genus database with same CATH topology
3BL4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BL4 A; 
#chains in the Genus database with same CATH topology
 1OAO C;  3I04 M;  1MJG M;  1RU3 A;  3I01 M;  3GIT A;  3PMQ A;  1QHK A;  3BL4 A;  3BSU A;  3DOA A;  5H3X A;  2Z8Y M; 
#chains in the Genus database with same CATH homology
 3BL4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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