3BMBA

Crystal structure of a new rna polymerase interacting protein
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
135
structure length
135
Chain Sequence
SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQPEAAGDYLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna binding protein
source organism Escherichia coli
publication title Crystal structure of Escherichia coli Rnk, a new RNA polymerase-interacting protein.
pubmed doi rcsb
molecule keywords Regulator of nucleoside diphosphate kinase
total genus 36
structure length 135
sequence length 135
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-12-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01272 GreA_GreB Transcription elongation factor, GreA/GreB, C-term
A PF14760 Rnk_N Rnk N-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.286.20 Mainly Alpha Orthogonal Bundle GTP Cyclohydrolase I; Chain A, domain 1 GTP Cyclohydrolase I; Chain A, domain 1 3bmbA01
3.10.50.30 Alpha Beta Roll Chitinase A; domain 3 Transcription elongation factor, GreA/GreB, C-terminal domain 3bmbA02
1GRJA 2EULA 2F23A 3GU0A 2ETNA 1TFEA 2PN0A 3GTYX 3BMBA 1AIPC 4Q7JA 2P4VA 1EFUB
chains in the Genus database with same CATH superfamily
3IK8A 3ARQA 4R0XA 3IHZA 1Q6HA 1NH6A 2LO0A 1D2KA 2KI3A 4NNRA 2PPPA 4LAYA 2EULA 4DZ3A 3PR9A 3IKGA 1NMVA 2DT0A 3ARSA 4IPXA 2WLYA 4JFKA 1E44A 1IS7A 4G50A 3RM8A 1EQ3A 3KABA 1Q6UA 3AQUA 3ARZA 4Z2JA 1WAWA 1JCHB 3H9RB 2Y78A 4C02B 2PV2A 3O5RA 4WKAA 3PRDA 4FAPA 4NE5B 1UR9A 1GRJA 1X6NA 1FKBA 1OGGA 3KCEA 2RUQA 4ODOA 1N1AA 3FXYA 2PBCA 2B5UB 4QT3A 1XHGA 2RUDA 2KFWA 1D6OA 1FB1A 3CHEA 1IX5A 2FKEA 1LG2A 5HBFA 5J6EA 2WSCG 4Z2IA 4QT2A 2YBTA 1GTPA 2LGOA 4U84A 1WUQA 4TW6A 3O5GA 5DIUA 4IT4A 2N87A 2M08A 3VEJA 3OOBA 5HW7A 3B9DA 3WD1A 4MNMA 2M1IA 5BXJA 2RSEA 2WSEG 1Q6IA 3WD4A 4DWSA 2ZQUA 4ODMA 3RFWA 4DWSD 3UI5A 1O6IA 4MSPA 3ARRA 4WKFA 1FAPA 1FKIA 4JYSA 1FKDA 2O9OA 4TW8A 4DH0A 3B0BC 4O2TA 1E9LA 1WM9A 5JH8A 3B7XA 1X6LA 2JZVA 3GTYX 5HT1A 1JNTA 2MPHA 5HKGA 2LNZA 3ALGA 5I98A 4ODPA 4WKHA 3JYMA 4DU6A 1R9HA 3ARTA 5DEZA 4LAVA 4BF8A 1ITXA 3O5FA 1GOIA 2WM0A 4DRJA 3ARUA 3B8SA 1D7IA 1NWTA 1TFEA 1OGBA 2A3AA 2FDMA 3RMEA 4W9OA 3WD3A 4KR0B 4MNKA 4Q7NA 1EDQA 1HKMA 2OFNA 1CTNA 2YBUA 1PBKA 1FD9A 3JXVA 4DRIA 5B8IC 4JA3A 5GPRA 2ZR5A 1J4RA 2XP9A 3AROA 4IQ2A 2DT3A 4MGVA 4MNJA 4U86A 2P11A 1NSGA 1ZK6A 2A3BA 2WK2A 3LUOA 1ZBCA 4ZPVR 5D75A 2WSCK 2ZQVA 2M2AA 1ROUA 1W9UA 1W1YA 2PPOA 2DT1A 3GPKA 1EIBA 1LL7A 2ESCA 4NE6B 4P8XA 2WLZA 4Z2LA 1E6PA 3PRAA 4ITZA 4TNSA 1GUVA 3O5LA 2WSEK 4E44B 2DT2A 4MTVA 1ZU8A 5HTGA 4XAKA 3WH0A 1ZBVA 1C9HA 1FBXA 2ZQSA 1W1PA 4FN2A 3PA7A 3G6MA 1HKKA 1LL4A 1H0GA 2DG3A 3KACA 1FKRA 1M5YA 4JFLA 1U79A 2WSFG 2PI6A 4IQCA 4MAVA 1HXVA 4URIA 1HKIA 1FFRA 3ARWA 3I6CA 3AS0A 3O5DA 4Z2KA 1H0IA 4WIWA 3GU0A 3O5IA 1W1VA 3LW5G 2OLHA 1HJXA 3KAHA 1FJDA 5HW8A 2F4EA 1LL6A 3EY6A 3KAFA 3O5MA 1PINA 1ZB5A 3WKZA 1ZBKA 4L3NA 4QZVB 4W5UA 2IF4A 4ODLA 4QPMA 4LAWA 1W26A 1EL6A 1TCOC 1HKJA 1J4HA 2PV3A 4HARA 3NRKA 3RM4A 3CGMA 4ODNA 4W9QA 3TDBA 3TCZA 1N3TA 2DG9A 2QF8A 2XP3A 1F40A 1FKHA 1JNSA 1W9PA 2LPVA 2LKNA 4DRKA 2VN1A 1WPLA 4HBOA 4ODQA 2MLYA 2LJ4A 4NE3B 4IT6A 1EFUB 2KGJA 3CHDA 1QPFA 2DPEA 1NWUA 4S3JA 4GGQA 1W9VA 4J4NA 3KZ7A 4NZCA 1FKGA 1FKLA 1FKKA 3NI6A 2DSVA 2AOSA 1LJYA 1GPFA 3WL0A 1WNOA 3WQWA 4DRQA 1QZ2A 3OA5A 3CHFA 1HJWA 1E6NA 3ALFA 1LG1A 1WB0A 2XP7A 1J4IA 4N19A 5HW6A 1WURA 1IS8A 3WIJA 1FKTA 2XP6A 2PPNA 2UZ5A 1SR0A 3O5JA 1FKJA 1ZCNA 4DZ2A 2F23A 2PN0A 3JYJA 1NWRA 2K8IA 1P5QA 3WQVA 4AY1A 2FAPA 4MNLA 1NMWA 1N3SA 1JNDA 4DWSB 3KAGA 2P4VA 2G41A 2A3CA 4QIBA 4JFIA 5DIVA 1ZL1A 1VF8A 1AIPC 4ML4A 4ODKA 2AWGA 1LQ0A 2RQSA 1A9CA 4R8QA 4ZS6A 3FAPA 3AS3A 3UI6A 1UR8A 3O5QA 2DG4A 2MLXA 3O5OA 5HUAA 2F21A 3QOKA 2O01G 3ARPA 3ODKA 3O5EA 3VAWA 4TX0A 4Z2GA 2XP4A 4WJXA 2O92A 1A7XA 2DSUA 1D7HA 3O5PA 3ARVA 5DF0A 2RURA 5HWCA 4DIPA 2IUZA 1KFWA 4DWSC 3B9EA 1ZBWA 4P8WA 3KADA 2VCDA 4DRPA 1HJVA 1KT1A 4L72B 1EHNA 3TC5A 3BXWA 1N3RA 2ZR6A 1B6CA 4G2PA 2D9FA 5GQBA 3CH9A 2XPBA 1YATA 3ARYA 4LGXA 3UQBA 1L1PA 4DT4A 1OWQA 1E6ZA 3KAIA 2RUCA 1FFQA 2KE0A 4S3KA 1KT0A 1T11A 2DSWA 1A8RA 3W4RA 4DRMA 3CGNA 4PTMA 3B9AA 3AS1A 4JFJA 4U85A 4E45B 1NWSA 3UF8A 4W9PA 3RM9A 1D7JA 4TW7A 5DO2A 2PV1A 2Q5AA 3RGCA 4JFMA 1Q1CA 2KR1A 4LAXA 2ZQTA 5DMZA 4KQZA 2G8ZA 4GIVA 1ROTA 2ETNA 4HBEA 3UQAA 1K9TA 4ODRA 4TYOA 1FKFA 2XP8A 3G6LA 4DRNA 4NSBA 1F8AB 3CZ8A 1E6RA 4P8UA 4DRBJ 4DROA 2MLZA 3O5KA 1XRVA 1Y0OA 3MDYB 3WL1A 1EYMA 1TFVA 3EIPA 2DSZA 2MNTA 3WD2A 4Q7JA 2KR7A 2ZR4A 3NTPA 1BL4A 1BKFA 2MF9A 3ARXA 3BMBA 2F2DA 1JVWA 4DRAE 1SYTA 5HWBA 4ZPWR 3PRBA 4MPKA 3UI4A 2ITKA 3IKDA 2XP5A 4R5EA 4ZPTR 4P8VA 1E15A 4J4OA 4DRHA 2WSFK 3CHCA 2XPAA 1JNEA 3FY1A 4WK9A 5GPGA 5DITA 4UDMA 2KO7A 1J6YA 2A3EA 3LW5K 1QPLA 1W1TA 1FKSA 2L2SA 1YW5A 4Z2HA 3WD0A 3UQIA 3AS2A 2B31A 1RD6A 4Q22A
chains in the Genus database with same CATH topology
2P11A 1WUQA 4E44B 3GU0A 4DU6A 3VEJA 2LO0A 1N3SA 3B0BC 4NE5B 4DRBJ 4E45B 1WPLA 2P4VA 1N3RA 1GRJA 2EULA 1TFEA 1FBXA 4NE3B 1WM9A 1AIPC 4Q7JA 1WURA 1EFUB 4QPMA 2KR1A 1IS8A 1IS7A 1FB1A 1EL6A 1A9CA 4NE6B 5DMZA 4JA3A 3GTYX 3BMBA 1A8RA 4R8QA 2F23A 2ETNA 2LNZA 2PN0A 4DRAE 1GTPA 1N3TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GRJ A;  2EUL A;  2F23 A;  3GU0 A;  2ETN A;  1TFE A;  2PN0 A;  3GTY X;  3BMB A;  1AIP C;  4Q7J A;  2P4V A;  1EFU B; 
#chains in the Genus database with same CATH topology
 3IK8 A;  3ARQ A;  4R0X A;  3IHZ A;  1Q6H A;  1NH6 A;  2LO0 A;  1D2K A;  2KI3 A;  4NNR A;  2PPP A;  4LAY A;  2EUL A;  4DZ3 A;  3PR9 A;  3IKG A;  1NMV A;  2DT0 A;  3ARS A;  4IPX A;  2WLY A;  4JFK A;  1E44 A;  1IS7 A;  4G50 A;  3RM8 A;  1EQ3 A;  3KAB A;  1Q6U A;  3AQU A;  3ARZ A;  4Z2J A;  1WAW A;  1JCH B;  3H9R B;  2Y78 A;  4C02 B;  2PV2 A;  3O5R A;  4WKA A;  3PRD A;  4FAP A;  4NE5 B;  1UR9 A;  1GRJ A;  1X6N A;  1FKB A;  1OGG A;  3KCE A;  2RUQ A;  4ODO A;  1N1A A;  3FXY A;  2PBC A;  2B5U B;  4QT3 A;  1XHG A;  2RUD A;  2KFW A;  1D6O A;  1FB1 A;  3CHE A;  1IX5 A;  2FKE A;  1LG2 A;  5HBF A;  5J6E A;  2WSC G;  4Z2I A;  4QT2 A;  2YBT A;  1GTP A;  2LGO A;  4U84 A;  1WUQ A;  4TW6 A;  3O5G A;  5DIU A;  4IT4 A;  2N87 A;  2M08 A;  3VEJ A;  3OOB A;  5HW7 A;  3B9D A;  3WD1 A;  4MNM A;  2M1I A;  5BXJ A;  2RSE A;  2WSE G;  1Q6I A;  3WD4 A;  4DWS A;  2ZQU A;  4ODM A;  3RFW A;  4DWS D;  3UI5 A;  1O6I A;  4MSP A;  3ARR A;  4WKF A;  1FAP A;  1FKI A;  4JYS A;  1FKD A;  2O9O A;  4TW8 A;  4DH0 A;  3B0B C;  4O2T A;  1E9L A;  1WM9 A;  5JH8 A;  3B7X A;  1X6L A;  2JZV A;  3GTY X;  5HT1 A;  1JNT A;  2MPH A;  5HKG A;  2LNZ A;  3ALG A;  5I98 A;  4ODP A;  4WKH A;  3JYM A;  4DU6 A;  1R9H A;  3ART A;  5DEZ A;  4LAV A;  4BF8 A;  1ITX A;  3O5F A;  1GOI A;  2WM0 A;  4DRJ A;  3ARU A;  3B8S A;  1D7I A;  1NWT A;  1TFE A;  1OGB A;  2A3A A;  2FDM A;  3RME A;  4W9O A;  3WD3 A;  4KR0 B;  4MNK A;  4Q7N A;  1EDQ A;  1HKM A;  2OFN A;  1CTN A;  2YBU A;  1PBK A;  1FD9 A;  3JXV A;  4DRI A;  5B8I C;  4JA3 A;  5GPR A;  2ZR5 A;  1J4R A;  2XP9 A;  3ARO A;  4IQ2 A;  2DT3 A;  4MGV A;  4MNJ A;  4U86 A;  2P11 A;  1NSG A;  1ZK6 A;  2A3B A;  2WK2 A;  3LUO A;  1ZBC A;  4ZPV R;  5D75 A;  2WSC K;  2ZQV A;  2M2A A;  1ROU A;  1W9U A;  1W1Y A;  2PPO A;  2DT1 A;  3GPK A;  1EIB A;  1LL7 A;  2ESC A;  4NE6 B;  4P8X A;  2WLZ A;  4Z2L A;  1E6P A;  3PRA A;  4ITZ A;  4TNS A;  1GUV A;  3O5L A;  2WSE K;  4E44 B;  2DT2 A;  4MTV A;  1ZU8 A;  5HTG A;  4XAK A;  3WH0 A;  1ZBV A;  1C9H A;  1FBX A;  2ZQS A;  1W1P A;  4FN2 A;  3PA7 A;  3G6M A;  1HKK A;  1LL4 A;  1H0G A;  2DG3 A;  3KAC A;  1FKR A;  1M5Y A;  4JFL A;  1U79 A;  2WSF G;  2PI6 A;  4IQC A;  4MAV A;  1HXV A;  4URI A;  1HKI A;  1FFR A;  3ARW A;  3I6C A;  3AS0 A;  3O5D A;  4Z2K A;  1H0I A;  4WIW A;  3GU0 A;  3O5I A;  1W1V A;  3LW5 G;  2OLH A;  1HJX A;  3KAH A;  1FJD A;  5HW8 A;  2F4E A;  1LL6 A;  3EY6 A;  3KAF A;  3O5M A;  1PIN A;  1ZB5 A;  3WKZ A;  1ZBK A;  4L3N A;  4QZV B;  4W5U A;  2IF4 A;  4ODL A;  4QPM A;  4LAW A;  1W26 A;  1EL6 A;  1TCO C;  1HKJ A;  1J4H A;  2PV3 A;  4HAR A;  3NRK A;  3RM4 A;  3CGM A;  4ODN A;  4W9Q A;  3TDB A;  3TCZ A;  1N3T A;  2DG9 A;  2QF8 A;  2XP3 A;  1F40 A;  1FKH A;  1JNS A;  1W9P A;  2LPV A;  2LKN A;  4DRK A;  2VN1 A;  1WPL A;  4HBO A;  4ODQ A;  2MLY A;  2LJ4 A;  4NE3 B;  4IT6 A;  1EFU B;  2KGJ A;  3CHD A;  1QPF A;  2DPE A;  1NWU A;  4S3J A;  4GGQ A;  1W9V A;  4J4N A;  3KZ7 A;  4NZC A;  1FKG A;  1FKL A;  1FKK A;  3NI6 A;  2DSV A;  2AOS A;  1LJY A;  1GPF A;  3WL0 A;  1WNO A;  3WQW A;  4DRQ A;  1QZ2 A;  3OA5 A;  3CHF A;  1HJW A;  1E6N A;  3ALF A;  1LG1 A;  1WB0 A;  2XP7 A;  1J4I A;  4N19 A;  5HW6 A;  1WUR A;  1IS8 A;  3WIJ A;  1FKT A;  2XP6 A;  2PPN A;  2UZ5 A;  1SR0 A;  3O5J A;  1FKJ A;  1ZCN A;  4DZ2 A;  2F23 A;  2PN0 A;  3JYJ A;  1NWR A;  2K8I A;  1P5Q A;  3WQV A;  4AY1 A;  2FAP A;  4MNL A;  1NMW A;  1N3S A;  1JND A;  4DWS B;  3KAG A;  2P4V A;  2G41 A;  2A3C A;  4QIB A;  4JFI A;  5DIV A;  1ZL1 A;  1VF8 A;  1AIP C;  4ML4 A;  4ODK A;  2AWG A;  1LQ0 A;  2RQS A;  1A9C A;  4R8Q A;  4ZS6 A;  3FAP A;  3AS3 A;  3UI6 A;  1UR8 A;  3O5Q A;  2DG4 A;  2MLX A;  3O5O A;  5HUA A;  2F21 A;  3QOK A;  2O01 G;  3ARP A;  3ODK A;  3O5E A;  3VAW A;  4TX0 A;  4Z2G A;  2XP4 A;  4WJX A;  2O92 A;  1A7X A;  2DSU A;  1D7H A;  3O5P A;  3ARV A;  5DF0 A;  2RUR A;  5HWC A;  4DIP A;  2IUZ A;  1KFW A;  4DWS C;  3B9E A;  1ZBW A;  4P8W A;  3KAD A;  2VCD A;  4DRP A;  1HJV A;  1KT1 A;  4L72 B;  1EHN A;  3TC5 A;  3BXW A;  1N3R A;  2ZR6 A;  1B6C A;  4G2P A;  2D9F A;  5GQB A;  3CH9 A;  2XPB A;  1YAT A;  3ARY A;  4LGX A;  3UQB A;  1L1P A;  4DT4 A;  1OWQ A;  1E6Z A;  3KAI A;  2RUC A;  1FFQ A;  2KE0 A;  4S3K A;  1KT0 A;  1T11 A;  2DSW A;  1A8R A;  3W4R A;  4DRM A;  3CGN A;  4PTM A;  3B9A A;  3AS1 A;  4JFJ A;  4U85 A;  4E45 B;  1NWS A;  3UF8 A;  4W9P A;  3RM9 A;  1D7J A;  4TW7 A;  5DO2 A;  2PV1 A;  2Q5A A;  3RGC A;  4JFM A;  1Q1C A;  2KR1 A;  4LAX A;  2ZQT A;  5DMZ A;  4KQZ A;  2G8Z A;  4GIV A;  1ROT A;  2ETN A;  4HBE A;  3UQA A;  1K9T A;  4ODR A;  4TYO A;  1FKF A;  2XP8 A;  3G6L A;  4DRN A;  4NSB A;  1F8A B;  3CZ8 A;  1E6R A;  4P8U A;  4DRB J;  4DRO A;  2MLZ A;  3O5K A;  1XRV A;  1Y0O A;  3MDY B;  3WL1 A;  1EYM A;  1TFV A;  3EIP A;  2DSZ A;  2MNT A;  3WD2 A;  4Q7J A;  2KR7 A;  2ZR4 A;  3NTP A;  1BL4 A;  1BKF A;  2MF9 A;  3ARX A;  3BMB A;  2F2D A;  1JVW A;  4DRA E;  1SYT A;  5HWB A;  4ZPW R;  3PRB A;  4MPK A;  3UI4 A;  2ITK A;  3IKD A;  2XP5 A;  4R5E A;  4ZPT R;  4P8V A;  1E15 A;  4J4O A;  4DRH A;  2WSF K;  3CHC A;  2XPA A;  1JNE A;  3FY1 A;  4WK9 A;  5GPG A;  5DIT A;  4UDM A;  2KO7 A;  1J6Y A;  2A3E A;  3LW5 K;  1QPL A;  1W1T A;  1FKS A;  2L2S A;  1YW5 A;  4Z2H A;  3WD0 A;  3UQI A;  3AS2 A;  2B31 A;  1RD6 A;  4Q22 A; 
#chains in the Genus database with same CATH homology
 2P11 A;  1WUQ A;  4E44 B;  3GU0 A;  4DU6 A;  3VEJ A;  2LO0 A;  1N3S A;  3B0B C;  4NE5 B;  4DRB J;  4E45 B;  1WPL A;  2P4V A;  1N3R A;  1GRJ A;  2EUL A;  1TFE A;  1FBX A;  4NE3 B;  1WM9 A;  1AIP C;  4Q7J A;  1WUR A;  1EFU B;  4QPM A;  2KR1 A;  1IS8 A;  1IS7 A;  1FB1 A;  1EL6 A;  1A9C A;  4NE6 B;  5DMZ A;  4JA3 A;  3GTY X;  3BMB A;  1A8R A;  4R8Q A;  2F23 A;  2ETN A;  2LNZ A;  2PN0 A;  4DRA E;  1GTP A;  1N3T A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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