3BMBA

Crystal structure of a new rna polymerase interacting protein
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
135
structure length
135
Chain Sequence
b'SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQPEAAGDYLL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of Escherichia coli Rnk, a new RNA polymerase-interacting protein.
pubmed doi rcsb
molecule keywords Regulator of nucleoside diphosphate kinase
source organism Escherichia coli
molecule tags Rna binding protein
total genus 36
structure length 135
sequence length 135
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-12-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01272 GreA_GreB Transcription elongation factor, GreA/GreB, C-term
A PF14760 Rnk_N Rnk N-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.286.20 Mainly Alpha Orthogonal Bundle GTP Cyclohydrolase I; Chain A, domain 1 GTP Cyclohydrolase I; Chain A, domain 1 3bmbA01
3.10.50.30 Alpha Beta Roll Chitinase A; domain 3 Transcription elongation factor, GreA/GreB, C-terminal domain 3bmbA02
1GRJA 2ETNA 1AIPC 2P4VA 1TFEA 2PN0A 1EFUB 3BMBA 2F23A 3GU0A 4Q7JA 3GTYX 2EULA
chains in the Genus database with same CATH superfamily
4HBOA 1EQ3A 1A9CA 1J4RA 2PI6A 2VN1A 3PRDA 1OGGA 4IT6A 5GPGA 4W5UA 3UQIA 4ODRA 1ZK6A 2L2SA 2ZQSA 3ARQA 1SR0A 3ARYA 1W1TA 2K8IA 1JNTA 1TFVA 3AS3A 4BF8A 2YBTA 3O5JA 1GTPA 4GGQA 2PV1A 4QZVB 3AQUA 1X6NA 4QT3A 4MNLA 3WD1A 1E15A 2PPNA 1HJWA 2WSFK 1FKGA 2MPHA 2G41A 5DITA 4FAPA 4MNJA 1ZBCA 2ZQTA 1WURA 2PBCA 4Z2KA 2DG3A 1KT1A 3RM8A 1NMWA 2XP4A 3KABA 1XHGA 1ZB5A 4TW6A 4DROA 3KZ7A 1R9HA 2VCDA 1E6ZA 5HT1A 4MGVA 3FY1A 1ROUA 5HW7A 1GUVA 3OOBA 4NE5B 1LQ0A 2QF8A 3CH9A 2FKEA 1HJXA 2AOSA 4NSBA 1N1AA 2LNZA 3KAFA 1A8RA 2MNTA 3BXWA 3ALGA 2Q5AA 3ARVA 4DWSA 1EHNA 1YW5A 2FDMA 3TCZA 4QIBA 3FAPA 5DF0A 1W9PA 3UF8A 2JZVA 1FB1A 4WKHA 4DT4A 1LL4A 2DG9A 3EIPA 1B6CA 1D6OA 1PINA 4U84A 3KACA 2DSVA 4ZS6A 3W4RA 4LAYA 3WH0A 3IKGA 3O5GA 3PA7A 5JH8A 1IS7A 2KR1A 4ZPWR 1FKHA 1W1VA 3LW5G 1LG1A 3PRAA 3QOKA 2A3BA 2DT0A 5J6EA 2B31A 1E6NA 2RUCA 2LKNA 4TX0A 2XP8A 3TC5A 4NE6B 1GPFA 3I6CA 5GPRA 1FKDA 4J4NA 4DRNA 1QZ2A 1LG2A 3UQBA 2A3CA 5DMZA 4DWSC 3WKZA 1FJDA 4Q22A 1NWSA 1FFRA 4DRHA 4DWSB 1HKIA 2B5UB 3O5DA 1U79A 1WUQA 2XPBA 4ZPVR 2N87A 2FAPA 3WD4A 1YATA 1ZCNA 3O5EA 3KAGA 3O5FA 1GOIA 3WQVA 3B9DA 2WSCG 4DRAE 1N3RA 4MAVA 4LAVA 4ODNA 2D9FA 3CGNA 3CHCA 4Q7JA 1E6PA 4O2TA 4C02B 1ZBVA 2RSEA 2M2AA 4ODLA 1F40A 4Q7NA 1LL6A 2PPOA 1N3SA 2RQSA 4LAXA 1M5YA 1QPFA 4W9PA 2DT2A 2F4EA 3O5LA 4DZ2A 4WKAA 4IQ2A 2KGJA 3LW5K 1W26A 3ARPA 3RGCA 1FKLA 4DWSD 2YBUA 3O5OA 2O92A 3CHFA 4S3KA 4P8VA 5HWCA 3OA5A 2IF4A 3B0BC 1J4IA 3ARUA 1ZBWA 2PV3A 1FKBA 1QPLA 5DEZA 1NMVA 4P8WA 3BMBA 2WLZA 3UQAA 1EYMA 4DH0A 1WPLA 2ZR4A 5DIUA 1WAWA 2F2DA 1T11A 4ODMA 2DSUA 4GIVA 1D7JA 2MLXA 2DT3A 3CZ8A 2MF9A 4ITZA 2F21A 4MNMA 2WSCK 3O5MA 3NTPA 1JNSA 4ZPTR 1D7IA 4LGXA 4DIPA 4IT4A 1UR8A 1FAPA 4KR0B 4S3JA 3PR9A 3O5KA 3RM9A 1E6RA 1FKKA 4AY1A 1FBXA 4JA3A 1HJVA 1K9TA 3EY6A 2XPAA 4PTMA 2XP6A 2ZQUA 1IS8A 1J4HA 2XP5A 4L3NA 1W9UA 3ODKA 2AWGA 1E9LA 3ARSA 2M08A 4URIA 2O01G 3VAWA 2G8ZA 5D75A 4UDMA 4W9OA 1FKSA 1HXVA 1OGBA 3B9AA 4JFLA 1ITXA 4NNRA 1AIPC 1EFUB 3CHDA 2P11A 4R5EA 3UI6A 3CHEA 4P8UA 3ARRA 1C9HA 4MPKA 1P5QA 1E44A 2RUQA 4DRPA 2LO0A 3JXVA 5I98A 2KFWA 3CGMA 2PPPA 4WK9A 1TFEA 1EIBA 5HW6A 1SYTA 4WJXA 4MNKA 2DPEA 3WD0A 2EULA 3KADA 4QPMA 3KAIA 4TW8A 1NWRA 3KAHA 3PRBA 1UR9A 3WL1A 4KQZA 5HTGA 2OFNA 4P8XA 2WSEG 1Q6UA 2LJ4A 2Y78A 1FKJA 4HARA 4Z2HA 1FFQA 4DU6A 1J6YA 1ZL1A 1W9VA 2ITKA 4HBEA 3B7XA 2F23A 1XRVA 4G2PA 5HBFA 5HKGA 1FKRA 4NE3B 1CTNA 1HKJA 3FXYA 2RUDA 2DG4A 2XP7A 4TW7A 4DRBJ 3G6LA 1NWUA 4Z2JA 3NRKA 1JNDA 4DRMA 1D7HA 2PN0A 2KE0A 3ALFA 5BXJA 1EL6A 4ODKA 3B8SA 2O9OA 2OLHA 2IUZA 2KR7A 1FKFA 3GTYX 1FKIA 1OWQA 2DT1A 4E45B 1H0GA 4TNSA 4IQCA 1HKKA 1KFWA 4N19A 4Z2LA 4MSPA 1IX5A 4MTVA 1ZBKA 3IKDA 5GQBA 5B8IC 1WM9A 3ARTA 3WQWA 1LL7A 3IHZA 1W1YA 1EDQA 1JVWA 2ETNA 3JYMA 1NH6A 4DRKA 4J4OA 1N3TA 2PV2A 4TYOA 2WSEK 1H0IA 2LGOA 3ARZA 4ODQA 4IPXA 3VEJA 4U85A 4XAKA 2WLYA 2RURA 4DRJA 3WIJA 3O5IA 4ODOA 1PBKA 4LAWA 1HKMA 1FKTA 1TCOC 3RM4A 1BL4A 1D2KA 4JYSA 3O5RA 2KO7A 1ZU8A 4ODPA 4NZCA 4WKFA 2ZR6A 1WB0A 2MLYA 4L72B 5DIVA 1WNOA 4DZ3A 1GRJA 1JNEA 3RFWA 3ARWA 2ESCA 3UI5A 5HWBA 4DRQA 3JYJA 1L1PA 2LPVA 2ZQVA 3RMEA 5DO2A 1A7XA 1X6LA 1Q1CA 1Q6HA 3GPKA 3O5PA 1ROTA 3GU0A 3ARXA 2XP9A 4E44B 3G6MA 1NSGA 1RD6A 2MLZA 1Q6IA 4R0XA 4ML4A 2A3EA 5HW8A 1O6IA 3KCEA 3B9EA 4DRIA 3NI6A 2M1IA 2P4VA 1KT0A 2DSZA 2XP3A 3WD3A 1FD9A 2KI3A 4JFJA 3AROA 4Z2GA 3WL0A 1W1PA 1JCHB 2UZ5A 3H9RB 3AS0A 4G50A 4QT2A 1BKFA 4R8QA 2WM0A 4Z2IA 1NWTA 4U86A 1Y0OA 4JFKA 3AS1A 2ZR5A 2WSFG 3MDYB 2DSWA 4W9QA 1LJYA 2WK2A 4WIWA 1F8AB 4FN2A 3AS2A 3WD2A 3LUOA 1VF8A 3IK8A 5HUAA 4JFMA 2A3AA 3UI4A 3O5QA 4JFIA 3TDBA
chains in the Genus database with same CATH topology
2ETNA 4R8QA 1A9CA 3B0BC 3GU0A 5DMZA 1IS8A 1GTPA 1N3TA 4Q7JA 4DU6A 2LO0A 4E44B 3GTYX 4NE5B 4E45B 1TFEA 2F23A 3VEJA 1WUQA 1IS7A 2KR1A 2LNZA 2EULA 1N3SA 4NE3B 4QPMA 1A8RA 1GRJA 4DRAE 2P4VA 3BMBA 4DRBJ 1WPLA 1WURA 1AIPC 1FBXA 4JA3A 4NE6B 1EFUB 2PN0A 1WM9A 2P11A 1FB1A 1N3RA 1EL6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GRJ A;  2ETN A;  1AIP C;  2P4V A;  1TFE A;  2PN0 A;  1EFU B;  3BMB A;  2F23 A;  3GU0 A;  4Q7J A;  3GTY X;  2EUL A; 
#chains in the Genus database with same CATH topology
 4HBO A;  1EQ3 A;  1A9C A;  1J4R A;  2PI6 A;  2VN1 A;  3PRD A;  1OGG A;  4IT6 A;  5GPG A;  4W5U A;  3UQI A;  4ODR A;  1ZK6 A;  2L2S A;  2ZQS A;  3ARQ A;  1SR0 A;  3ARY A;  1W1T A;  2K8I A;  1JNT A;  1TFV A;  3AS3 A;  4BF8 A;  2YBT A;  3O5J A;  1GTP A;  4GGQ A;  2PV1 A;  4QZV B;  3AQU A;  1X6N A;  4QT3 A;  4MNL A;  3WD1 A;  1E15 A;  2PPN A;  1HJW A;  2WSF K;  1FKG A;  2MPH A;  2G41 A;  5DIT A;  4FAP A;  4MNJ A;  1ZBC A;  2ZQT A;  1WUR A;  2PBC A;  4Z2K A;  2DG3 A;  1KT1 A;  3RM8 A;  1NMW A;  2XP4 A;  3KAB A;  1XHG A;  1ZB5 A;  4TW6 A;  4DRO A;  3KZ7 A;  1R9H A;  2VCD A;  1E6Z A;  5HT1 A;  4MGV A;  3FY1 A;  1ROU A;  5HW7 A;  1GUV A;  3OOB A;  4NE5 B;  1LQ0 A;  2QF8 A;  3CH9 A;  2FKE A;  1HJX A;  2AOS A;  4NSB A;  1N1A A;  2LNZ A;  3KAF A;  1A8R A;  2MNT A;  3BXW A;  3ALG A;  2Q5A A;  3ARV A;  4DWS A;  1EHN A;  1YW5 A;  2FDM A;  3TCZ A;  4QIB A;  3FAP A;  5DF0 A;  1W9P A;  3UF8 A;  2JZV A;  1FB1 A;  4WKH A;  4DT4 A;  1LL4 A;  2DG9 A;  3EIP A;  1B6C A;  1D6O A;  1PIN A;  4U84 A;  3KAC A;  2DSV A;  4ZS6 A;  3W4R A;  4LAY A;  3WH0 A;  3IKG A;  3O5G A;  3PA7 A;  5JH8 A;  1IS7 A;  2KR1 A;  4ZPW R;  1FKH A;  1W1V A;  3LW5 G;  1LG1 A;  3PRA A;  3QOK A;  2A3B A;  2DT0 A;  5J6E A;  2B31 A;  1E6N A;  2RUC A;  2LKN A;  4TX0 A;  2XP8 A;  3TC5 A;  4NE6 B;  1GPF A;  3I6C A;  5GPR A;  1FKD A;  4J4N A;  4DRN A;  1QZ2 A;  1LG2 A;  3UQB A;  2A3C A;  5DMZ A;  4DWS C;  3WKZ A;  1FJD A;  4Q22 A;  1NWS A;  1FFR A;  4DRH A;  4DWS B;  1HKI A;  2B5U B;  3O5D A;  1U79 A;  1WUQ A;  2XPB A;  4ZPV R;  2N87 A;  2FAP A;  3WD4 A;  1YAT A;  1ZCN A;  3O5E A;  3KAG A;  3O5F A;  1GOI A;  3WQV A;  3B9D A;  2WSC G;  4DRA E;  1N3R A;  4MAV A;  4LAV A;  4ODN A;  2D9F A;  3CGN A;  3CHC A;  4Q7J A;  1E6P A;  4O2T A;  4C02 B;  1ZBV A;  2RSE A;  2M2A A;  4ODL A;  1F40 A;  4Q7N A;  1LL6 A;  2PPO A;  1N3S A;  2RQS A;  4LAX A;  1M5Y A;  1QPF A;  4W9P A;  2DT2 A;  2F4E A;  3O5L A;  4DZ2 A;  4WKA A;  4IQ2 A;  2KGJ A;  3LW5 K;  1W26 A;  3ARP A;  3RGC A;  1FKL A;  4DWS D;  2YBU A;  3O5O A;  2O92 A;  3CHF A;  4S3K A;  4P8V A;  5HWC A;  3OA5 A;  2IF4 A;  3B0B C;  1J4I A;  3ARU A;  1ZBW A;  2PV3 A;  1FKB A;  1QPL A;  5DEZ A;  1NMV A;  4P8W A;  3BMB A;  2WLZ A;  3UQA A;  1EYM A;  4DH0 A;  1WPL A;  2ZR4 A;  5DIU A;  1WAW A;  2F2D A;  1T11 A;  4ODM A;  2DSU A;  4GIV A;  1D7J A;  2MLX A;  2DT3 A;  3CZ8 A;  2MF9 A;  4ITZ A;  2F21 A;  4MNM A;  2WSC K;  3O5M A;  3NTP A;  1JNS A;  4ZPT R;  1D7I A;  4LGX A;  4DIP A;  4IT4 A;  1UR8 A;  1FAP A;  4KR0 B;  4S3J A;  3PR9 A;  3O5K A;  3RM9 A;  1E6R A;  1FKK A;  4AY1 A;  1FBX A;  4JA3 A;  1HJV A;  1K9T A;  3EY6 A;  2XPA A;  4PTM A;  2XP6 A;  2ZQU A;  1IS8 A;  1J4H A;  2XP5 A;  4L3N A;  1W9U A;  3ODK A;  2AWG A;  1E9L A;  3ARS A;  2M08 A;  4URI A;  2O01 G;  3VAW A;  2G8Z A;  5D75 A;  4UDM A;  4W9O A;  1FKS A;  1HXV A;  1OGB A;  3B9A A;  4JFL A;  1ITX A;  4NNR A;  1AIP C;  1EFU B;  3CHD A;  2P11 A;  4R5E A;  3UI6 A;  3CHE A;  4P8U A;  3ARR A;  1C9H A;  4MPK A;  1P5Q A;  1E44 A;  2RUQ A;  4DRP A;  2LO0 A;  3JXV A;  5I98 A;  2KFW A;  3CGM A;  2PPP A;  4WK9 A;  1TFE A;  1EIB A;  5HW6 A;  1SYT A;  4WJX A;  4MNK A;  2DPE A;  3WD0 A;  2EUL A;  3KAD A;  4QPM A;  3KAI A;  4TW8 A;  1NWR A;  3KAH A;  3PRB A;  1UR9 A;  3WL1 A;  4KQZ A;  5HTG A;  2OFN A;  4P8X A;  2WSE G;  1Q6U A;  2LJ4 A;  2Y78 A;  1FKJ A;  4HAR A;  4Z2H A;  1FFQ A;  4DU6 A;  1J6Y A;  1ZL1 A;  1W9V A;  2ITK A;  4HBE A;  3B7X A;  2F23 A;  1XRV A;  4G2P A;  5HBF A;  5HKG A;  1FKR A;  4NE3 B;  1CTN A;  1HKJ A;  3FXY A;  2RUD A;  2DG4 A;  2XP7 A;  4TW7 A;  4DRB J;  3G6L A;  1NWU A;  4Z2J A;  3NRK A;  1JND A;  4DRM A;  1D7H A;  2PN0 A;  2KE0 A;  3ALF A;  5BXJ A;  1EL6 A;  4ODK A;  3B8S A;  2O9O A;  2OLH A;  2IUZ A;  2KR7 A;  1FKF A;  3GTY X;  1FKI A;  1OWQ A;  2DT1 A;  4E45 B;  1H0G A;  4TNS A;  4IQC A;  1HKK A;  1KFW A;  4N19 A;  4Z2L A;  4MSP A;  1IX5 A;  4MTV A;  1ZBK A;  3IKD A;  5GQB A;  5B8I C;  1WM9 A;  3ART A;  3WQW A;  1LL7 A;  3IHZ A;  1W1Y A;  1EDQ A;  1JVW A;  2ETN A;  3JYM A;  1NH6 A;  4DRK A;  4J4O A;  1N3T A;  2PV2 A;  4TYO A;  2WSE K;  1H0I A;  2LGO A;  3ARZ A;  4ODQ A;  4IPX A;  3VEJ A;  4U85 A;  4XAK A;  2WLY A;  2RUR A;  4DRJ A;  3WIJ A;  3O5I A;  4ODO A;  1PBK A;  4LAW A;  1HKM A;  1FKT A;  1TCO C;  3RM4 A;  1BL4 A;  1D2K A;  4JYS A;  3O5R A;  2KO7 A;  1ZU8 A;  4ODP A;  4NZC A;  4WKF A;  2ZR6 A;  1WB0 A;  2MLY A;  4L72 B;  5DIV A;  1WNO A;  4DZ3 A;  1GRJ A;  1JNE A;  3RFW A;  3ARW A;  2ESC A;  3UI5 A;  5HWB A;  4DRQ A;  3JYJ A;  1L1P A;  2LPV A;  2ZQV A;  3RME A;  5DO2 A;  1A7X A;  1X6L A;  1Q1C A;  1Q6H A;  3GPK A;  3O5P A;  1ROT A;  3GU0 A;  3ARX A;  2XP9 A;  4E44 B;  3G6M A;  1NSG A;  1RD6 A;  2MLZ A;  1Q6I A;  4R0X A;  4ML4 A;  2A3E A;  5HW8 A;  1O6I A;  3KCE A;  3B9E A;  4DRI A;  3NI6 A;  2M1I A;  2P4V A;  1KT0 A;  2DSZ A;  2XP3 A;  3WD3 A;  1FD9 A;  2KI3 A;  4JFJ A;  3ARO A;  4Z2G A;  3WL0 A;  1W1P A;  1JCH B;  2UZ5 A;  3H9R B;  3AS0 A;  4G50 A;  4QT2 A;  1BKF A;  4R8Q A;  2WM0 A;  4Z2I A;  1NWT A;  4U86 A;  1Y0O A;  4JFK A;  3AS1 A;  2ZR5 A;  2WSF G;  3MDY B;  2DSW A;  4W9Q A;  1LJY A;  2WK2 A;  4WIW A;  1F8A B;  4FN2 A;  3AS2 A;  3WD2 A;  3LUO A;  1VF8 A;  3IK8 A;  5HUA A;  4JFM A;  2A3A A;  3UI4 A;  3O5Q A;  4JFI A;  3TDB A; 
#chains in the Genus database with same CATH homology
 2ETN A;  4R8Q A;  1A9C A;  3B0B C;  3GU0 A;  5DMZ A;  1IS8 A;  1GTP A;  1N3T A;  4Q7J A;  4DU6 A;  2LO0 A;  4E44 B;  3GTY X;  4NE5 B;  4E45 B;  1TFE A;  2F23 A;  3VEJ A;  1WUQ A;  1IS7 A;  2KR1 A;  2LNZ A;  2EUL A;  1N3S A;  4NE3 B;  4QPM A;  1A8R A;  1GRJ A;  4DRA E;  2P4V A;  3BMB A;  4DRB J;  1WPL A;  1WUR A;  1AIP C;  1FBX A;  4JA3 A;  4NE6 B;  1EFU B;  2PN0 A;  1WM9 A;  2P11 A;  1FB1 A;  1N3R A;  1EL6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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