The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
36
|
sequence length |
135
|
structure length |
135
|
Chain Sequence |
SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQPEAAGDYLL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of Escherichia coli Rnk, a new RNA polymerase-interacting protein.
pubmed doi rcsb |
| molecule tags |
Rna binding protein
|
| source organism |
Escherichia coli
|
| molecule keywords |
Regulator of nucleoside diphosphate kinase
|
| total genus |
36
|
| structure length |
135
|
| sequence length |
135
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2007-12-12 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01272 | GreA_GreB | Transcription elongation factor, GreA/GreB, C-term |
| A | PF14760 | Rnk_N | Rnk N-terminus |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | GTP Cyclohydrolase I; Chain A, domain 1 | GTP Cyclohydrolase I; Chain A, domain 1 | ||
| Alpha Beta | Roll | Chitinase A; domain 3 | Transcription elongation factor, GreA/GreB, C-terminal domain |
#chains in the Genus database with same CATH superfamily 3GTY X; 2P4V A; 3GU0 A; 1TFE A; 1EFU B; 2PN0 A; 2EUL A; 2F23 A; 4Q7J A; 1AIP C; 2ETN A; 3BMB A; 1GRJ A; #chains in the Genus database with same CATH topology 5GQB A; 4S3J A; 3FAP A; 1RD6 A; 1PIN A; 1JNT A; 4WIW A; 4Z2J A; 2XPA A; 1FKR A; 1WM9 A; 1NMV A; 3UF8 A; 4DZ3 A; 4DH0 A; 4ODQ A; 2AWG A; 2ZQS A; 3O5D A; 3O5F A; 5D75 A; 3NTP A; 2RUC A; 3KAC A; 2ZQT A; 1WUR A; 4U85 A; 1Q6I A; 3O5O A; 1N3S A; 2FDM A; 3PA7 A; 1OGG A; 1C9H A; 3EY6 A; 2LKN A; 2QF8 A; 1W9P A; 2L2S A; 4C02 B; 1B6C A; 1WPL A; 1WB0 A; 2MLX A; 5HUA A; 3WD0 A; 3VEJ A; 2A3B A; 2G41 A; 2PV2 A; 4JYS A; 3WQW A; 3KAI A; 1PBK A; 1ZCN A; 4P8W A; 4WK9 A; 2WSF G; 4J4N A; 4NE3 B; 3CHD A; 4KQZ A; 2YBU A; 2XP8 A; 3WD3 A; 4DRI A; 1X6L A; 5BXJ A; 2KR1 A; 4IQ2 A; 3ARX A; 1FJD A; 4ZPV R; 2FKE A; 4U84 A; 4DWS B; 4R8Q A; 3W4R A; 3GU0 A; 4DWS C; 4G2P A; 4IT4 A; 2PPO A; 1J4H A; 2ETN A; 4WKH A; 1EDQ A; 5DO2 A; 1L1P A; 1WNO A; 4DRA E; 1H0I A; 4Z2I A; 2PI6 A; 1A7X A; 4PTM A; 1IX5 A; 4Z2G A; 2M2A A; 2XP6 A; 4DZ2 A; 1FKG A; 4TW7 A; 1JCH B; 4Z2K A; 2PV1 A; 2ZR4 A; 4IT6 A; 4DT4 A; 1GTP A; 3UI5 A; 3KAG A; 4TNS A; 4LAV A; 4DRJ A; 1FKF A; 1FD9 A; 2MNT A; 4ODR A; 1CTN A; 2A3A A; 2ITK A; 1KT1 A; 1FBX A; 4WJX A; 2WLY A; 1ITX A; 1ZBK A; 5DIU A; 3AS1 A; 3CGM A; 4W5U A; 5DMZ A; 3AQU A; 4ODM A; 2IUZ A; 2Y78 A; 2DT2 A; 1HXV A; 2DSW A; 3TCZ A; 2KE0 A; 4NNR A; 2XPB A; 4DWS A; 3B8S A; 3UQB A; 5HT1 A; 3MDY B; 1IS8 A; 1FKB A; 1JND A; 5J6E A; 2MLZ A; 3ARY A; 5HW7 A; 1HKI A; 4ODN A; 3B9A A; 1GRJ A; 3WD4 A; 5HW8 A; 1HJX A; 2WSC K; 3TC5 A; 3ARQ A; 1M5Y A; 3O5I A; 4L72 B; 3BXW A; 5HWB A; 1O6I A; 2DT0 A; 4DRP A; 1ZB5 A; 2A3E A; 1UR9 A; 3WL1 A; 3B9E A; 1GPF A; 3AS0 A; 3ARV A; 4NZC A; 4FN2 A; 3G6L A; 4DRO A; 1FKJ A; 1XRV A; 1TCO C; 4GIV A; 2XP3 A; 2DG9 A; 4JFI A; 3O5Q A; 4P8V A; 3ALF A; 4LGX A; 4QPM A; 4HAR A; 1J4R A; 2OFN A; 3RFW A; 3RM4 A; 1ROU A; 1NWT A; 3ARS A; 1F40 A; 1EL6 A; 1ZBV A; 3LW5 G; 2D9F A; 1F8A B; 4P8U A; 2WSE K; 1NH6 A; 4AY1 A; 4QT3 A; 1KT0 A; 2DSV A; 1HJW A; 4GGQ A; 3UQI A; 1FB1 A; 4MNJ A; 2MLY A; 4UDM A; 5DF0 A; 3UI6 A; 1BKF A; 3PRA A; 1W1P A; 3ARW A; 2FAP A; 1OWQ A; 2F2D A; 5GPG A; 2ZR6 A; 2WLZ A; 2LO0 A; 1LJY A; 3IHZ A; 2EUL A; 3KCE A; 3BMB A; 1LL7 A; 1UR8 A; 4HBE A; 2WK2 A; 1JNS A; 1ZBC A; 1N3R A; 2YBT A; 3CZ8 A; 3QOK A; 1ZK6 A; 2ZQV A; 2ZQU A; 2KR7 A; 1SYT A; 2XP7 A; 3CHE A; 3CHC A; 4MAV A; 3O5M A; 1W1Y A; 3ARP A; 3IKD A; 1LQ0 A; 4MGV A; 4QIB A; 4MPK A; 3KZ7 A; 1AIP C; 1JVW A; 3B0B C; 3GPK A; 2LPV A; 4KR0 B; 2WSE G; 4J4O A; 4O2T A; 1HKK A; 4L3N A; 4W9P A; 1Q1C A; 2XP4 A; 5GPR A; 1E44 A; 2KFW A; 4ODL A; 4QT2 A; 1T11 A; 4NE6 B; 4R0X A; 2PPN A; 4DRB J; 2DG4 A; 2XP9 A; 2B31 A; 3H9R B; 4JFL A; 1D2K A; 3O5L A; 3TDB A; 1QPF A; 4DRQ A; 2VN1 A; 3EIP A; 4ZPW R; 5DEZ A; 4HBO A; 2JZV A; 1ZL1 A; 2A3C A; 4TW8 A; 4ODP A; 3RGC A; 2KO7 A; 2O92 A; 1FKD A; 2DSZ A; 4N19 A; 2PV3 A; 4JFK A; 4Z2H A; 1J4I A; 2O01 G; 3FXY A; 1FKK A; 2RUQ A; 4TW6 A; 4XAK A; 1E6Z A; 4Q22 A; 4ML4 A; 1ZU8 A; 1LL6 A; 2LNZ A; 1FKS A; 1K9T A; 4JFJ A; 3O5P A; 1GUV A; 3B9D A; 2F4E A; 4IQC A; 3KAH A; 2M08 A; 3RME A; 1FFR A; 1E6N A; 3NI6 A; 1IS7 A; 4U86 A; 1E6P A; 3PRB A; 1E6R A; 4IPX A; 3WD1 A; 1JNE A; 3LUO A; 3AS2 A; 4W9Q A; 3JYJ A; 3WQV A; 1YAT A; 4ODO A; 1LG2 A; 3AS3 A; 3B7X A; 3UI4 A; 2PPP A; 4FAP A; 5JH8 A; 3WKZ A; 4JA3 A; 4NE5 B; 2RQS A; 3ART A; 4LAY A; 2PN0 A; 1FKT A; 2M1I A; 3JXV A; 1NMW A; 1NWU A; 3FY1 A; 1YW5 A; 1Y0O A; 2UZ5 A; 3ARO A; 3OA5 A; 2WSF K; 1FKL A; 4R5E A; 2AOS A; 1VF8 A; 1R9H A; 3I6C A; 1LL4 A; 3KAF A; 4Q7N A; 2MF9 A; 1E15 A; 2ESC A; 3IK8 A; 3O5R A; 3ARZ A; 2WSC G; 1D7I A; 4DIP A; 2DSU A; 1Q6U A; 3O5J A; 3GTY X; 3G6M A; 1KFW A; 4S3K A; 4MSP A; 3CHF A; 4LAX A; 5HBF A; 5HW6 A; 1ROT A; 2MPH A; 5HWC A; 1U79 A; 1N1A A; 2DT3 A; 3KAB A; 3RM9 A; 2O9O A; 1NWS A; 3O5K A; 4ITZ A; 4TYO A; 3IKG A; 2F23 A; 1HKJ A; 3O5G A; 1EIB A; 2KGJ A; 3ODK A; 3PRD A; 1QPL A; 5DIT A; 4WKF A; 3CGN A; 4ODK A; 3VAW A; 1W26 A; 3WD2 A; 5HKG A; 4G50 A; 3WH0 A; 4DU6 A; 2B5U B; 4QZV B; 3ALG A; 1H0G A; 2P4V A; 1D7J A; 1EQ3 A; 3O5E A; 1GOI A; 1TFV A; 1X6N A; 2RUR A; 3ARU A; 1HKM A; 1EFU B; 2RUD A; 4DRN A; 2ZR5 A; 1D7H A; 1SR0 A; 2IF4 A; 5DIV A; 4DWS D; 5I98 A; 2OLH A; 1FFQ A; 4DRK A; 1WUQ A; 4NSB A; 1ZBW A; 4E45 B; 1E9L A; 1OGB A; 3WL0 A; 4LAW A; 4Z2L A; 1Q6H A; 4DRH A; 4URI A; 2G8Z A; 1A9C A; 5B8I C; 1FKH A; 3CH9 A; 1BL4 A; 2F21 A; 2WM0 A; 1TFE A; 1EYM A; 4MNK A; 1LG1 A; 3OOB A; 1HJV A; 2DG3 A; 4ZPT R; 2K8I A; 2DT1 A; 1W9U A; 2KI3 A; 4MNL A; 2DPE A; 2Q5A A; 2N87 A; 5HTG A; 3RM8 A; 4DRM A; 1QZ2 A; 3JYM A; 3NRK A; 4P8X A; 1N3T A; 1WAW A; 1W9V A; 3WIJ A; 4E44 B; 1W1V A; 4WKA A; 1J6Y A; 1D6O A; 4BF8 A; 1EHN A; 4ZS6 A; 4JFM A; 1FKI A; 2LJ4 A; 3PR9 A; 4MTV A; 1W1T A; 3ARR A; 1XHG A; 3LW5 K; 1FAP A; 1NWR A; 2RSE A; 2XP5 A; 4MNM A; 2P11 A; 2LGO A; 1NSG A; 2PBC A; 3KAD A; 4TX0 A; 1A8R A; 4Q7J A; 1P5Q A; 3UQA A; 4W9O A; 2VCD A; #chains in the Genus database with same CATH homology 3GTY X; 1IS7 A; 4E45 B; 5DMZ A; 1N3T A; 2LO0 A; 2EUL A; 4E44 B; 3BMB A; 1WM9 A; 1EL6 A; 1N3R A; 1WPL A; 2KR1 A; 1A9C A; 4DU6 A; 1GTP A; 2P4V A; 4R8Q A; 3VEJ A; 4NE6 B; 3GU0 A; 2LNZ A; 1TFE A; 1EFU B; 1FB1 A; 4DRB J; 2ETN A; 1WUR A; 1IS8 A; 4JA3 A; 4NE5 B; 2P11 A; 4QPM A; 4DRA E; 1N3S A; 2PN0 A; 2F23 A; 1A8R A; 1WUQ A; 4Q7J A; 1AIP C; 1FBX A; 4NE3 B; 3B0B C; 1GRJ A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
