3BP3A

Crystal structure of eiib
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
81
structure length
81
Chain Sequence
b'TGTSEMAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVVVAGSGVQAIFGTKSDNLKTEMDEYIRN'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Analyses of Mlc-IIBGlc interaction and a plausible molecular mechanism of Mlc inactivation by membrane sequestration.
pubmed doi rcsb
molecule keywords Glucose-specific phosphotransferase enzyme IIB component
source organism Escherichia coli
molecule tags Transferase
total genus 16
structure length 81
sequence length 81
chains with identical sequence B
ec nomenclature ec 2.7.1.199: Protein-N(pi)-phosphohistidine--D-glucose phosphotransferase.
pdb deposition date 2007-12-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00367 PTS_EIIB phosphotransferase system, EIIB
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.60 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 Glucose permease domain IIB 3bp3A00
3IPJA 1IBAA 1O2FB 3BP3A 3BP8C
chains in the Genus database with same CATH superfamily
2NVQC 4A93K 2NVTC 2Y0SD 4A3EC 1IL2A 4A3MK 1WIHA 3L4KA 2A69A 1TWFK 2FQOA 2GSOA 3HOVK 3S2HC 4BLBA 1TWAC 1BJTA 4G0VA 2GAGC 3S1RC 1K83C 4OIOA 2NVXC 3GTJA 4KATA 1O2FB 1I3QA 4KB4A 4LOWA 4BY7C 2V6UA 5C44K 4ILDA 1I3QC 5EGEA 2EBBA 2P8TA 3GTKA 3GTMC 1PJ5A 5IP7C 4GTCA 3S1QK 4A3LC 1SFOC 4A3KC 1J6XA 3AH5A 3GTKC 1HI9A 3FOFA 1R9TC 3RZDC 2V6SA 4A3JC 1WCMC 2E2HA 3OEPA 3PO2K 3HOZC 3HOXK 1WQFA 3H0GK 3V4GA 5C4JC 4A3DC 4ZH4A 3A8JA 3GTPA 3A8IA 4AH6A 3CQZC 1AB4A 3A8KA 1TWGK 1IBAA 1RU0A 5IP9K 3HOYK 3GTJK 4A3FC 5D4DA 2R92K 1DCHA 4J3NA 3GTOA 3HKZD 4MEYA 4YFXA 1GE9A 4KMAA 4Q5SA 3NUHA 4KAWX 3FKIK 3PO3K 3AD9C 4QJVA 2JH3A 3CAGA 1USMA 2PPBA 4AYBD 4WJ3M 1ZVUA 3JSTA 3M4OK 1L0WA 4G0UA 4Y7NK 4C3IK 4DDQA 3Q3QA 2E2HK 2NVYA 4BBRK 4GTEA 3GIRA 1TWFA 5FJ8K 5IORA 4KC6A 4A3MC 4WJ4A 1TWCA 1TWFC 3HOVC 3T01A 3HOWK 2KWAA 3SZYA 2R93C 1Y1VC 4GT9A 4MQ9A 5IYBK 3SZZA 5IOQA 5JFEA 1EFWA 4GTLA 4KDDA 4YFNA 4X6AK 4LK0A 1XXCA 1WOPA 3S16C 1JOEA 4A3IK 4BKWA 4GTAA 3ERED 2B63C 2E2JK 5C44C 3DXJA 4Y52K 1SMYA 5C4XK 3I4NK 4P9SA 4XLNA 5IOSA 1VJEA 2NVYK 4KB2A 5FLMC 4OINA 3S1QC 3GTQK 2JA7K 2W7VA 5TMFA 2GSUA 4LJZA 2RGRA 1WORA 4GTDA 4BLAA 3VA7A 3HXAA 2YU9K 4RMFA 5IOTA 3T00A 1TWCK 3H0GA 4A3BC 2V6TA 3L4JA 2WAQL 3TFHA 3PO2C 4XLPA 3HOXC 4LQYA 1I6HC 1TWGA 3HOUC 3AQPA 4QIWL 2R92A 4KN4A 1I50K 1TWGC 5IP9C 4BBSC 2VUMA 1BGWA 3GTJC 4KMDA 2PHCB 3FKIA 3FOEA 3WODA 2O5IA 3MMLB 2ZUEA 3N0BA 1B4BA 2FQTA 2D6FC 2A6EA 3N0CA 4A3GC 3GTLA 3GTGK 4OIPA 3OREA 1JQWA 2E2IK 4XCHA 2JA6A 3S2DK 3OPFA 1F7UA 1I6VA 3M4OC 4C3HK 4GTBA 1USOA 4C3IC 2E2HC 4KN7A 4KMUA 4QJVB 1PJ7A 2O5JA 3S17C 3GTPC 1YX2A 2Y0SL 5CJ9A 1VGXA 3S2HK 1WSVA 5IYBC 4LK1A 1O2BA 2VUMK 4WILA 5TMCA 3LAPA 4BXXC 4X6AC 1WSRA 1KQ4A 1EQRA 3GTOC 4PABA 4JK1A 1BS2A 1G51A 1O29A 4A3IC 5C3EK 5M5XK 5IYDC 3G4AA 3S1MK 2ZFZA 2JA8C 3GTLK 2CFAA 4A3CC 4MEXA 2JA6K 1Y1WA 2E2JC 3LAJA 3H3VL 1VLOA 4Y52C 3GTQA 3GTMK 1J6VA 2JA7A 5C4XC 1XZQA 3I4NC 4A93C 3G4CA 5IP7K 2A6HA 4A3LK 2NVYC 1SFOK 2YU9A 4P5AA 4G7ZA 2JA7C 1R9TK 3I4MK 5M3MK 1DCPA 2WAQD 4A3JK 3IPJA 4XSXA 1TWCC 4KASA 3LPXA 1DD5A 4QIWD 4A3DK 2A68A 2PMZL 2GSNA 2GAHC 3BP3A 4M1XA 1I50A 3CQZK 1J98A 4GTFA 1ZBSA 4C45A 2R7ZK 1X31C 1C0AA 4XSZA 3GEEA 1HQMA 1XZPB 3ADAC 1EH1A 5IYCK 3K7AK 3S1NK 3QX3A 1Y1WK 2JA5K 2XCQA 4GZYA 3GTGA 2E2IA 1TWHA 1ZQ1C 4KM9A 2CW0A 3S2DC 1XZPA 2Y3PA 1ZXOA 4C3HC 1DCOA 3H0GC 1WOSA 1WQGA 4C2MK 1UV7A 4YG2A 1BDFA 4KM8A 1YNJA 5TJ3A 3N3YA 5JVOA 3FHZA 4KMHA 1TWAA 1VH2A 3HOYC 1XXBA 4LLGA 2R92C 3S14K 2R93K 1Y1VK 4C3JK 2PA8L 1K83A 2VUMC 1O2AA 2NVXA 3FKIC 2ZUFA 3PO3C 4O2DA 3S16K 4P5BA 4OIQA 2BE5A 3TFJA 3BUEA 1WQHA 3M3YK 3AQOA 3S15K 5C3EC 3S0XA 1YCLA 3RZOK 4KARA 1O28A 3S1MC 3GEHA 1TWHK 3H3VD 2WB1L 3GTLC 2RH6A 2B63K 1IQ0A 5CHPA 1WOOA 1J6WA 3GTMA 4BY1K 4Y7NC 2JA6C 2NVQK 1IW7A 2P5MA 1SFOA 4BBRC 2NVTK 3EQLA 4A3EK 5FLMK 3TTGA 1R9TA 1F7VA 1EK8A 1WCMA 3TFIA 1O24A 2CFAB 1O25A 3I4MC 1TWAK 3HOWC 1B4AA 4Q4ZA 4FM9A 4A3BK 2PMZD 1ZYRA 3S1RK 3CQZA 1XZQB 4G7HA 1K83K 4YFKA 3GEIA 1I6HK 2NVXK 4G0WA 3HOUK 2R7ZA 2XCOA 3BP8C 3GDZA 2R7ZC 5L46A 4BY7K 4BBSK 1VRQC 5E68A 4PAAA 1EI6A 1I3QK 5M5WK 2JA5A 2XCRB 1JVIA 4NOIA 5IYCC 4FZBA 3K7AC 3S1NC 4GFQA 1Y1WC 2JA5C 1ISEA 3T02A 4A3KK 3GTKK 5EGHA 3GTQC 4A3GK 2YU9C 1YNNA 1F9NA 1O26A 3RZDK 1WCMK 1V5VA 1XPPA 1IE0A 1IS1A 3HOZK 4OIRA 5C4JK 1F93A 1PJ6A 4C2MC 4G7OA 3S17K 2R93A 3GTPK 1I50C 1Y1VA 2PA8D 4A3FK 4LR2A 3S14C 1O27A 4C3JC 4BXXK 3GSIA 3GTOK 3HKZL 5M3FK 5M5YK 3AD7C 5HL8A 2WB1D 3M3YC 5IYDK 3GTGC 3S15C 2B63A 1XXAA 2E2IC 2JA8K 3RZOC 3AD8C 1INNA 1TWHC 4A3CK 4AYBL 4BY1C
chains in the Genus database with same CATH topology
3IPJA 1IBAA 1O2FB 3BP3A 3BP8C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3IPJ A;  1IBA A;  1O2F B;  3BP3 A;  3BP8 C; 
#chains in the Genus database with same CATH topology
 2NVQ C;  4A93 K;  2NVT C;  2Y0S D;  4A3E C;  1IL2 A;  4A3M K;  1WIH A;  3L4K A;  2A69 A;  1TWF K;  2FQO A;  2GSO A;  3HOV K;  3S2H C;  4BLB A;  1TWA C;  1BJT A;  4G0V A;  2GAG C;  3S1R C;  1K83 C;  4OIO A;  2NVX C;  3GTJ A;  4KAT A;  1O2F B;  1I3Q A;  4KB4 A;  4LOW A;  4BY7 C;  2V6U A;  5C44 K;  4ILD A;  1I3Q C;  5EGE A;  2EBB A;  2P8T A;  3GTK A;  3GTM C;  1PJ5 A;  5IP7 C;  4GTC A;  3S1Q K;  4A3L C;  1SFO C;  4A3K C;  1J6X A;  3AH5 A;  3GTK C;  1HI9 A;  3FOF A;  1R9T C;  3RZD C;  2V6S A;  4A3J C;  1WCM C;  2E2H A;  3OEP A;  3PO2 K;  3HOZ C;  3HOX K;  1WQF A;  3H0G K;  3V4G A;  5C4J C;  4A3D C;  4ZH4 A;  3A8J A;  3GTP A;  3A8I A;  4AH6 A;  3CQZ C;  1AB4 A;  3A8K A;  1TWG K;  1IBA A;  1RU0 A;  5IP9 K;  3HOY K;  3GTJ K;  4A3F C;  5D4D A;  2R92 K;  1DCH A;  4J3N A;  3GTO A;  3HKZ D;  4MEY A;  4YFX A;  1GE9 A;  4KMA A;  4Q5S A;  3NUH A;  4KAW X;  3FKI K;  3PO3 K;  3AD9 C;  4QJV A;  2JH3 A;  3CAG A;  1USM A;  2PPB A;  4AYB D;  4WJ3 M;  1ZVU A;  3JST A;  3M4O K;  1L0W A;  4G0U A;  4Y7N K;  4C3I K;  4DDQ A;  3Q3Q A;  2E2H K;  2NVY A;  4BBR K;  4GTE A;  3GIR A;  1TWF A;  5FJ8 K;  5IOR A;  4KC6 A;  4A3M C;  4WJ4 A;  1TWC A;  1TWF C;  3HOV C;  3T01 A;  3HOW K;  2KWA A;  3SZY A;  2R93 C;  1Y1V C;  4GT9 A;  4MQ9 A;  5IYB K;  3SZZ A;  5IOQ A;  5JFE A;  1EFW A;  4GTL A;  4KDD A;  4YFN A;  4X6A K;  4LK0 A;  1XXC A;  1WOP A;  3S16 C;  1JOE A;  4A3I K;  4BKW A;  4GTA A;  3ERE D;  2B63 C;  2E2J K;  5C44 C;  3DXJ A;  4Y52 K;  1SMY A;  5C4X K;  3I4N K;  4P9S A;  4XLN A;  5IOS A;  1VJE A;  2NVY K;  4KB2 A;  5FLM C;  4OIN A;  3S1Q C;  3GTQ K;  2JA7 K;  2W7V A;  5TMF A;  2GSU A;  4LJZ A;  2RGR A;  1WOR A;  4GTD A;  4BLA A;  3VA7 A;  3HXA A;  2YU9 K;  4RMF A;  5IOT A;  3T00 A;  1TWC K;  3H0G A;  4A3B C;  2V6T A;  3L4J A;  2WAQ L;  3TFH A;  3PO2 C;  4XLP A;  3HOX C;  4LQY A;  1I6H C;  1TWG A;  3HOU C;  3AQP A;  4QIW L;  2R92 A;  4KN4 A;  1I50 K;  1TWG C;  5IP9 C;  4BBS C;  2VUM A;  1BGW A;  3GTJ C;  4KMD A;  2PHC B;  3FKI A;  3FOE A;  3WOD A;  2O5I A;  3MML B;  2ZUE A;  3N0B A;  1B4B A;  2FQT A;  2D6F C;  2A6E A;  3N0C A;  4A3G C;  3GTL A;  3GTG K;  4OIP A;  3ORE A;  1JQW A;  2E2I K;  4XCH A;  2JA6 A;  3S2D K;  3OPF A;  1F7U A;  1I6V A;  3M4O C;  4C3H K;  4GTB A;  1USO A;  4C3I C;  2E2H C;  4KN7 A;  4KMU A;  4QJV B;  1PJ7 A;  2O5J A;  3S17 C;  3GTP C;  1YX2 A;  2Y0S L;  5CJ9 A;  1VGX A;  3S2H K;  1WSV A;  5IYB C;  4LK1 A;  1O2B A;  2VUM K;  4WIL A;  5TMC A;  3LAP A;  4BXX C;  4X6A C;  1WSR A;  1KQ4 A;  1EQR A;  3GTO C;  4PAB A;  4JK1 A;  1BS2 A;  1G51 A;  1O29 A;  4A3I C;  5C3E K;  5M5X K;  5IYD C;  3G4A A;  3S1M K;  2ZFZ A;  2JA8 C;  3GTL K;  2CFA A;  4A3C C;  4MEX A;  2JA6 K;  1Y1W A;  2E2J C;  3LAJ A;  3H3V L;  1VLO A;  4Y52 C;  3GTQ A;  3GTM K;  1J6V A;  2JA7 A;  5C4X C;  1XZQ A;  3I4N C;  4A93 C;  3G4C A;  5IP7 K;  2A6H A;  4A3L K;  2NVY C;  1SFO K;  2YU9 A;  4P5A A;  4G7Z A;  2JA7 C;  1R9T K;  3I4M K;  5M3M K;  1DCP A;  2WAQ D;  4A3J K;  3IPJ A;  4XSX A;  1TWC C;  4KAS A;  3LPX A;  1DD5 A;  4QIW D;  4A3D K;  2A68 A;  2PMZ L;  2GSN A;  2GAH C;  3BP3 A;  4M1X A;  1I50 A;  3CQZ K;  1J98 A;  4GTF A;  1ZBS A;  4C45 A;  2R7Z K;  1X31 C;  1C0A A;  4XSZ A;  3GEE A;  1HQM A;  1XZP B;  3ADA C;  1EH1 A;  5IYC K;  3K7A K;  3S1N K;  3QX3 A;  1Y1W K;  2JA5 K;  2XCQ A;  4GZY A;  3GTG A;  2E2I A;  1TWH A;  1ZQ1 C;  4KM9 A;  2CW0 A;  3S2D C;  1XZP A;  2Y3P A;  1ZXO A;  4C3H C;  1DCO A;  3H0G C;  1WOS A;  1WQG A;  4C2M K;  1UV7 A;  4YG2 A;  1BDF A;  4KM8 A;  1YNJ A;  5TJ3 A;  3N3Y A;  5JVO A;  3FHZ A;  4KMH A;  1TWA A;  1VH2 A;  3HOY C;  1XXB A;  4LLG A;  2R92 C;  3S14 K;  2R93 K;  1Y1V K;  4C3J K;  2PA8 L;  1K83 A;  2VUM C;  1O2A A;  2NVX A;  3FKI C;  2ZUF A;  3PO3 C;  4O2D A;  3S16 K;  4P5B A;  4OIQ A;  2BE5 A;  3TFJ A;  3BUE A;  1WQH A;  3M3Y K;  3AQO A;  3S15 K;  5C3E C;  3S0X A;  1YCL A;  3RZO K;  4KAR A;  1O28 A;  3S1M C;  3GEH A;  1TWH K;  3H3V D;  2WB1 L;  3GTL C;  2RH6 A;  2B63 K;  1IQ0 A;  5CHP A;  1WOO A;  1J6W A;  3GTM A;  4BY1 K;  4Y7N C;  2JA6 C;  2NVQ K;  1IW7 A;  2P5M A;  1SFO A;  4BBR C;  2NVT K;  3EQL A;  4A3E K;  5FLM K;  3TTG A;  1R9T A;  1F7V A;  1EK8 A;  1WCM A;  3TFI A;  1O24 A;  2CFA B;  1O25 A;  3I4M C;  1TWA K;  3HOW C;  1B4A A;  4Q4Z A;  4FM9 A;  4A3B K;  2PMZ D;  1ZYR A;  3S1R K;  3CQZ A;  1XZQ B;  4G7H A;  1K83 K;  4YFK A;  3GEI A;  1I6H K;  2NVX K;  4G0W A;  3HOU K;  2R7Z A;  2XCO A;  3BP8 C;  3GDZ A;  2R7Z C;  5L46 A;  4BY7 K;  4BBS K;  1VRQ C;  5E68 A;  4PAA A;  1EI6 A;  1I3Q K;  5M5W K;  2JA5 A;  2XCR B;  1JVI A;  4NOI A;  5IYC C;  4FZB A;  3K7A C;  3S1N C;  4GFQ A;  1Y1W C;  2JA5 C;  1ISE A;  3T02 A;  4A3K K;  3GTK K;  5EGH A;  3GTQ C;  4A3G K;  2YU9 C;  1YNN A;  1F9N A;  1O26 A;  3RZD K;  1WCM K;  1V5V A;  1XPP A;  1IE0 A;  1IS1 A;  3HOZ K;  4OIR A;  5C4J K;  1F93 A;  1PJ6 A;  4C2M C;  4G7O A;  3S17 K;  2R93 A;  3GTP K;  1I50 C;  1Y1V A;  2PA8 D;  4A3F K;  4LR2 A;  3S14 C;  1O27 A;  4C3J C;  4BXX K;  3GSI A;  3GTO K;  3HKZ L;  5M3F K;  5M5Y K;  3AD7 C;  5HL8 A;  2WB1 D;  3M3Y C;  5IYD K;  3GTG C;  3S15 C;  2B63 A;  1XXA A;  2E2I C;  2JA8 K;  3RZO C;  3AD8 C;  1INN A;  1TWH C;  4A3C K;  4AYB L;  4BY1 C; 
#chains in the Genus database with same CATH homology
 3IPJ A;  1IBA A;  1O2F B;  3BP3 A;  3BP8 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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