3BP3A

Crystal structure of eiib
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
81
structure length
81
Chain Sequence
TGTSEMAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVVVAGSGVQAIFGTKSDNLKTEMDEYIRN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
source organism Escherichia coli
publication title Analyses of Mlc-IIBGlc interaction and a plausible molecular mechanism of Mlc inactivation by membrane sequestration.
pubmed doi rcsb
molecule keywords Glucose-specific phosphotransferase enzyme IIB component
total genus 16
structure length 81
sequence length 81
chains with identical sequence B
ec nomenclature ec 2.7.1.199: Protein-N(pi)-phosphohistidine--D-glucose phosphotransferase.
pdb deposition date 2007-12-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00367 PTS_EIIB phosphotransferase system, EIIB
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.60 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 Glucose permease domain IIB 3bp3A00
1O2FB 3BP3A 1IBAA 3IPJA 3BP8C
chains in the Genus database with same CATH superfamily
1WQGA 2JA6C 1I50K 2V6SA 3A8JA 3RZOK 3EQLA 3CQZK 4XSZA 4C3JK 2V6TA 4A3MC 1TWHK 3T00A 5FLMK 3S2HK 3GTKC 2E2IC 3S14C 3H3VD 1O2BA 2FQOA 4LLGA 3HOWC 2E2JC 2YU9K 1WSVA 3HOYK 1XPPA 2CFAB 4C3HC 3S2DC 2E2HA 5M5YK 3OPFA 5C4JC 3GEHA 4G7OA 4WILA 2ZFZA 4A3DK 1TWCK 4Y52C 4GTBA 1V5VA 4OIQA 3A8IA 1IL2A 4A3FK 2CW0A 2BE5A 3I4MC 5IP7C 1DCHA 2JA7A 4KARA 3M4OK 4G7HA 4A93C 1I3QA 4QJVA 1EQRA 3I4NC 3S1RK 1BS2A 2PA8L 4RMFA 4A3IC 4LK1A 4A3CK 3HOVC 1BDFA 4A3LC 3S15C 4G0UA 5IP9C 3HKZD 4J3NA 3CAGA 1J6VA 3SZZA 2NVYC 2E2HK 2R92C 3FOEA 3K7AK 4WJ4A 1I50C 1B4AA 3RZOC 1J98A 1VLOA 1XZQB 1WOOA 3CQZC 2ZUEA 4MEYA 1EK8A 1YNNA 4C2MC 4GFQA 1PJ5A 4GTCA 4ILDA 4C3JC 1WOPA 2JA7K 1BJTA 1TWHC 5FLMC 3S2HC 3S2DK 4M1XA 1I3QK 1O28A 4BY1K 3GTQA 2WAQD 1TWFA 3QX3A 1ZYRA 2FQTA 4BKWA 3HOYC 3IPJA 3I4MK 1L0WA 2NVXC 3H0GC 1XXBA 1GE9A 5C4XK 4OIRA 2P5MA 1IW7A 3RZDC 3AD9C 4A3DC 3GTJA 1TWCC 5IYBK 2GAGC 4QIWL 3GEIA 1EI6A 2WB1D 4BLAA 3G4CA 1YX2A 3LAJA 1XZPA 4LR2A 1JOEA 4GTAA 1SFOA 3H0GA 4A3LK 2NVXA 3S15K 5C3EC 5FJ8K 4KB4A 2A6EA 3GTGA 1RU0A 4FZBA 4GZYA 2B63C 3TFIA 3TTGA 3GDZA 4AH6A 3GTQK 1ZBSA 5CHPA 4A3KK 3AQOA 4LOWA 4A3CC 3BUEA 3HXAA 1TWFK 3N3YA 4C2MK 1HI9A 3S16C 1O26A 1PJ7A 3L4KA 2E2HC 3S0XA 3K7AC 1AB4A 3LAPA 3GTJK 1I6HC 2B63A 3M3YK 4GTLA 4A3GK 2D6FC 1EH1A 4YFKA 4MEXA 2PMZD 1WSRA 2NVTK 2JA7C 4AYBD 3GTOA 3JSTA 4PABA 2JA8K 1SFOK 3H0GK 2NVXK 1VJEA 1F93A 5IYDK 4KDDA 2NVQK 4BXXK 3RZDK 1I3QC 2CFAA 1O27A 1XXCA 4BY1C 5IYCK 4C45A 3GTGK 4A3BK 1JQWA 5M5WK 3T02A 4WJ3M 1INNA 2XCRB 1ZQ1C 1O2FB 2PPBA 1TWGC 4LJZA 5JVOA 5C4XC 3SZYA 5C3EK 2O5IA 5IYBC 1F7VA 4BBRK 1IE0A 2B63K 2GSUA 3MMLB 4KN7A 1HQMA 5C44C 4BLBA 1TWGA 3GTOK 2Y0SL 1Y1WC 3S16K 3S1QK 4KATA 4QJVB 1ISEA 4OIPA 3GTQC 1I6HK 4A3KC 3HOXC 2R93C 2GSNA 1DCOA 1TWFC 3FKIA 1XZQA 1K83A 3S1NK 3BP3A 4P9SA 1Y1WA 1Y1VA 3AD7C 3TFHA 1PJ6A 4Y7NK 3GTLC 4Q5SA 3GTJC 3M3YC 4LQYA 3H3VL 4A3GC 3HOZK 3S1MC 1J6WA 2R93A 1B4BA 1JVIA 3GTPA 4KMDA 2NVTC 2JA8C 1ZVUA 1SFOC 3ADAC 3ERED 2PHCB 1TWGK 1DCPA 4KMUA 5IYDC 1I6VA 2NVQC 4FM9A 4BXXC 3GTLA 3GTGC 5IYCC 4A3BC 4KMAA 1O24A 1USOA 4A3EK 5M3MK 4KN4A 4BBSK 5CJ9A 4XLPA 3OEPA 3AQPA 1ZXOA 3FKIK 1K83K 5C44K 1WIHA 1Y1WK 1Y1VK 2R7ZA 5JFEA 5EGHA 4G0WA 4C3IC 4BBRC 4XLNA 1X31C 4DDQA 1WCMA 1XXAA 3GSIA 3PO3K 3HOXK 4OIOA 2R93K 3GTPK 2PA8D 3FOFA 4X6AK 4P5AA 2XCOA 5M3FK 3GTOC 2O5JA 3BP8C 3GTMA 3S1QC 2A68A 4GTFA 3HKZL 2A69A 3GTLK 1F7UA 3NUHA 1R9TA 3VA7A 5D4DA 3HOUK 2RGRA 1IQ0A 3L4JA 3S1MK 1IS1A 2VUMA 1O25A 3OREA 5HL8A 4GTEA 1VRQC 1USMA 3S1NC 1F9NA 1WQFA 4G0VA 1O29A 1BGWA 4Y7NC 2Y3PA 2R7ZK 4YG2A 4O2DA 3HOZC 3N0BA 3T01A 1WCMK 2WAQL 2JA6A 5IORA 3PO2K 1SMYA 2V6UA 3GTMK 3S17K 1C0AA 3Q3QA 4JK1A 3AH5A 4C3IK 5TJ3A 1R9TK 4A3EC 3FHZA 3GTKA 4NOIA 3WODA 2WB1L 1J6XA 2E2IA 4QIWD 3GEEA 2W7VA 4KC6A 4G7ZA 5M5XK 2VUMK 4BBSC 4BY7K 5IOTA 4OINA 3FKIC 5IOSA 1K83C 3V4GA 1WORA 1Y1VC 2KWAA 1O2AA 3GIRA 3PO3C 5IOQA 1EFWA 2P8TA 3GTPC 5TMFA 3N0CA 4X6AC 2JA6K 5EGEA 4A3JC 3DXJA 4P5BA 1IBAA 1TWAC 2JA5C 4KM8A 4A3MK 3HOUC 2ZUFA 3GTKK 4KAWX 5L46A 2E2IK 3S14K 4PAAA 1G51A 2PMZL 1KQ4A 4AYBL 3HOWK 2E2JK 4Q4ZA 1WQHA 4YFXA 5E68A 2R7ZC 1TWAA 1VH2A 2JA5A 4C3HK 4KMHA 2R92A 2NVYA 5C4JK 4LK0A 1WCMC 3A8KA 1I50A 4XSXA 4Y52K 3PO2C 1YCLA 4MQ9A 3CQZA 5TMCA 1YNJA 4GT9A 3GTMC 4GTDA 2YU9C 3S17C 5IP7K 3LPXA 2XCQA 3G4AA 2GSOA 1TWHA 4XCHA 1WOSA 4ZH4A 1R9TC 2GAHC 4YFNA 1DD5A 4A93K 2VUMC 1UV7A 3I4NK 4BY7C 2EBBA 4A3FC 1XZPB 4A3IK 4A3JK 2A6HA 2YU9A 3TFJA 3HOVK 2RH6A 3M4OC 2Y0SD 1TWAK 5IP9K 4KM9A 2JH3A 4KB2A 2JA5K 2R92K 2NVYK 1TWCA 3S1RC 3AD8C 4KASA 1VGXA
chains in the Genus database with same CATH topology
1O2FB 3BP3A 1IBAA 3IPJA 3BP8C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1O2F B;  3BP3 A;  1IBA A;  3IPJ A;  3BP8 C; 
#chains in the Genus database with same CATH topology
 1WQG A;  2JA6 C;  1I50 K;  2V6S A;  3A8J A;  3RZO K;  3EQL A;  3CQZ K;  4XSZ A;  4C3J K;  2V6T A;  4A3M C;  1TWH K;  3T00 A;  5FLM K;  3S2H K;  3GTK C;  2E2I C;  3S14 C;  3H3V D;  1O2B A;  2FQO A;  4LLG A;  3HOW C;  2E2J C;  2YU9 K;  1WSV A;  3HOY K;  1XPP A;  2CFA B;  4C3H C;  3S2D C;  2E2H A;  5M5Y K;  3OPF A;  5C4J C;  3GEH A;  4G7O A;  4WIL A;  2ZFZ A;  4A3D K;  1TWC K;  4Y52 C;  4GTB A;  1V5V A;  4OIQ A;  3A8I A;  1IL2 A;  4A3F K;  2CW0 A;  2BE5 A;  3I4M C;  5IP7 C;  1DCH A;  2JA7 A;  4KAR A;  3M4O K;  4G7H A;  4A93 C;  1I3Q A;  4QJV A;  1EQR A;  3I4N C;  3S1R K;  1BS2 A;  2PA8 L;  4RMF A;  4A3I C;  4LK1 A;  4A3C K;  3HOV C;  1BDF A;  4A3L C;  3S15 C;  4G0U A;  5IP9 C;  3HKZ D;  4J3N A;  3CAG A;  1J6V A;  3SZZ A;  2NVY C;  2E2H K;  2R92 C;  3FOE A;  3K7A K;  4WJ4 A;  1I50 C;  1B4A A;  3RZO C;  1J98 A;  1VLO A;  1XZQ B;  1WOO A;  3CQZ C;  2ZUE A;  4MEY A;  1EK8 A;  1YNN A;  4C2M C;  4GFQ A;  1PJ5 A;  4GTC A;  4ILD A;  4C3J C;  1WOP A;  2JA7 K;  1BJT A;  1TWH C;  5FLM C;  3S2H C;  3S2D K;  4M1X A;  1I3Q K;  1O28 A;  4BY1 K;  3GTQ A;  2WAQ D;  1TWF A;  3QX3 A;  1ZYR A;  2FQT A;  4BKW A;  3HOY C;  3IPJ A;  3I4M K;  1L0W A;  2NVX C;  3H0G C;  1XXB A;  1GE9 A;  5C4X K;  4OIR A;  2P5M A;  1IW7 A;  3RZD C;  3AD9 C;  4A3D C;  3GTJ A;  1TWC C;  5IYB K;  2GAG C;  4QIW L;  3GEI A;  1EI6 A;  2WB1 D;  4BLA A;  3G4C A;  1YX2 A;  3LAJ A;  1XZP A;  4LR2 A;  1JOE A;  4GTA A;  1SFO A;  3H0G A;  4A3L K;  2NVX A;  3S15 K;  5C3E C;  5FJ8 K;  4KB4 A;  2A6E A;  3GTG A;  1RU0 A;  4FZB A;  4GZY A;  2B63 C;  3TFI A;  3TTG A;  3GDZ A;  4AH6 A;  3GTQ K;  1ZBS A;  5CHP A;  4A3K K;  3AQO A;  4LOW A;  4A3C C;  3BUE A;  3HXA A;  1TWF K;  3N3Y A;  4C2M K;  1HI9 A;  3S16 C;  1O26 A;  1PJ7 A;  3L4K A;  2E2H C;  3S0X A;  3K7A C;  1AB4 A;  3LAP A;  3GTJ K;  1I6H C;  2B63 A;  3M3Y K;  4GTL A;  4A3G K;  2D6F C;  1EH1 A;  4YFK A;  4MEX A;  2PMZ D;  1WSR A;  2NVT K;  2JA7 C;  4AYB D;  3GTO A;  3JST A;  4PAB A;  2JA8 K;  1SFO K;  3H0G K;  2NVX K;  1VJE A;  1F93 A;  5IYD K;  4KDD A;  2NVQ K;  4BXX K;  3RZD K;  1I3Q C;  2CFA A;  1O27 A;  1XXC A;  4BY1 C;  5IYC K;  4C45 A;  3GTG K;  4A3B K;  1JQW A;  5M5W K;  3T02 A;  4WJ3 M;  1INN A;  2XCR B;  1ZQ1 C;  1O2F B;  2PPB A;  1TWG C;  4LJZ A;  5JVO A;  5C4X C;  3SZY A;  5C3E K;  2O5I A;  5IYB C;  1F7V A;  4BBR K;  1IE0 A;  2B63 K;  2GSU A;  3MML B;  4KN7 A;  1HQM A;  5C44 C;  4BLB A;  1TWG A;  3GTO K;  2Y0S L;  1Y1W C;  3S16 K;  3S1Q K;  4KAT A;  4QJV B;  1ISE A;  4OIP A;  3GTQ C;  1I6H K;  4A3K C;  3HOX C;  2R93 C;  2GSN A;  1DCO A;  1TWF C;  3FKI A;  1XZQ A;  1K83 A;  3S1N K;  3BP3 A;  4P9S A;  1Y1W A;  1Y1V A;  3AD7 C;  3TFH A;  1PJ6 A;  4Y7N K;  3GTL C;  4Q5S A;  3GTJ C;  3M3Y C;  4LQY A;  3H3V L;  4A3G C;  3HOZ K;  3S1M C;  1J6W A;  2R93 A;  1B4B A;  1JVI A;  3GTP A;  4KMD A;  2NVT C;  2JA8 C;  1ZVU A;  1SFO C;  3ADA C;  3ERE D;  2PHC B;  1TWG K;  1DCP A;  4KMU A;  5IYD C;  1I6V A;  2NVQ C;  4FM9 A;  4BXX C;  3GTL A;  3GTG C;  5IYC C;  4A3B C;  4KMA A;  1O24 A;  1USO A;  4A3E K;  5M3M K;  4KN4 A;  4BBS K;  5CJ9 A;  4XLP A;  3OEP A;  3AQP A;  1ZXO A;  3FKI K;  1K83 K;  5C44 K;  1WIH A;  1Y1W K;  1Y1V K;  2R7Z A;  5JFE A;  5EGH A;  4G0W A;  4C3I C;  4BBR C;  4XLN A;  1X31 C;  4DDQ A;  1WCM A;  1XXA A;  3GSI A;  3PO3 K;  3HOX K;  4OIO A;  2R93 K;  3GTP K;  2PA8 D;  3FOF A;  4X6A K;  4P5A A;  2XCO A;  5M3F K;  3GTO C;  2O5J A;  3BP8 C;  3GTM A;  3S1Q C;  2A68 A;  4GTF A;  3HKZ L;  2A69 A;  3GTL K;  1F7U A;  3NUH A;  1R9T A;  3VA7 A;  5D4D A;  3HOU K;  2RGR A;  1IQ0 A;  3L4J A;  3S1M K;  1IS1 A;  2VUM A;  1O25 A;  3ORE A;  5HL8 A;  4GTE A;  1VRQ C;  1USM A;  3S1N C;  1F9N A;  1WQF A;  4G0V A;  1O29 A;  1BGW A;  4Y7N C;  2Y3P A;  2R7Z K;  4YG2 A;  4O2D A;  3HOZ C;  3N0B A;  3T01 A;  1WCM K;  2WAQ L;  2JA6 A;  5IOR A;  3PO2 K;  1SMY A;  2V6U A;  3GTM K;  3S17 K;  1C0A A;  3Q3Q A;  4JK1 A;  3AH5 A;  4C3I K;  5TJ3 A;  1R9T K;  4A3E C;  3FHZ A;  3GTK A;  4NOI A;  3WOD A;  2WB1 L;  1J6X A;  2E2I A;  4QIW D;  3GEE A;  2W7V A;  4KC6 A;  4G7Z A;  5M5X K;  2VUM K;  4BBS C;  4BY7 K;  5IOT A;  4OIN A;  3FKI C;  5IOS A;  1K83 C;  3V4G A;  1WOR A;  1Y1V C;  2KWA A;  1O2A A;  3GIR A;  3PO3 C;  5IOQ A;  1EFW A;  2P8T A;  3GTP C;  5TMF A;  3N0C A;  4X6A C;  2JA6 K;  5EGE A;  4A3J C;  3DXJ A;  4P5B A;  1IBA A;  1TWA C;  2JA5 C;  4KM8 A;  4A3M K;  3HOU C;  2ZUF A;  3GTK K;  4KAW X;  5L46 A;  2E2I K;  3S14 K;  4PAA A;  1G51 A;  2PMZ L;  1KQ4 A;  4AYB L;  3HOW K;  2E2J K;  4Q4Z A;  1WQH A;  4YFX A;  5E68 A;  2R7Z C;  1TWA A;  1VH2 A;  2JA5 A;  4C3H K;  4KMH A;  2R92 A;  2NVY A;  5C4J K;  4LK0 A;  1WCM C;  3A8K A;  1I50 A;  4XSX A;  4Y52 K;  3PO2 C;  1YCL A;  4MQ9 A;  3CQZ A;  5TMC A;  1YNJ A;  4GT9 A;  3GTM C;  4GTD A;  2YU9 C;  3S17 C;  5IP7 K;  3LPX A;  2XCQ A;  3G4A A;  2GSO A;  1TWH A;  4XCH A;  1WOS A;  4ZH4 A;  1R9T C;  2GAH C;  4YFN A;  1DD5 A;  4A93 K;  2VUM C;  1UV7 A;  3I4N K;  4BY7 C;  2EBB A;  4A3F C;  1XZP B;  4A3I K;  4A3J K;  2A6H A;  2YU9 A;  3TFJ A;  3HOV K;  2RH6 A;  3M4O C;  2Y0S D;  1TWA K;  5IP9 K;  4KM9 A;  2JH3 A;  4KB2 A;  2JA5 K;  2R92 K;  2NVY K;  1TWC A;  3S1R C;  3AD8 C;  4KAS A;  1VGX A; 
#chains in the Genus database with same CATH homology
 1O2F B;  3BP3 A;  1IBA A;  3IPJ A;  3BP8 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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