3BP9A

Structure of b-tropic mlv capsid n-terminal domain
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
131
structure length
131
Chain Sequence
PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
molecule keywords Gag protein
publication title Structure of B-MLV capsid amino-terminal domain reveals key features of viral tropism, gag assembly and core formation
pubmed doi rcsb
source organism Murine leukemia virus
total genus 39
structure length 131
sequence length 131
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, X, Y
ec nomenclature
pdb deposition date 2007-12-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.375.10 Mainly Alpha Orthogonal Bundle Human Immunodeficiency Virus Type 1 Capsid Protein Human Immunodeficiency Virus Type 1 Capsid Protein 3bp9A00
1QRJA 2PWMA 4XFZA 2X82A 1M9EC 1GWPA 2XGVA 4XROA 1D1DA 1M9XC 2WLVB 4PH0A 1G03A 4INBA 1AFVA 4U0DA 2EIAA 2XGYA 4U0BA 2GOLB 3BP9A 1M9CC 4DGEC 4J93A 1EIAA 2WLVA 5HGOA 2M8LA 4XRQA 3H4EA 3NTEA 5JPAA 1AK4C 2KGFA 5HGNA 2M8NA 4XFXA 4LQWC 4E91A 4U0CA 1P7NA 1EM9A 2GONA 1U7KA 2M8PA 1E6JP 3H47A 1M9YC 2PWOA 4WYMA 2XGUA 1L6NA 5HGMA 4XFYA 4U0FA 4U0AA 4B4NA 4QNBA 2V4XA 1M9DC 2X83A 2XDEA 4PH3A 4PH2A 4E92A 2Y4ZA 4HTWA 5HGKA 2JPRA 3P05A 4DGAC 4U0EA 2PXRC 1M9FC 2X2DD 5HGLA 3MGEA 4NX4C 2LF4A
chains in the Genus database with same CATH superfamily
1QRJA 2PWMA 4XFZA 2X82A 1M9EC 1GWPA 2XGVA 4XROA 1D1DA 1M9XC 2WLVB 4PH0A 1G03A 4INBA 1AFVA 4U0DA 2EIAA 2XGYA 4U0BA 2GOLB 3BP9A 1M9CC 4DGEC 4J93A 1EIAA 2WLVA 5HGOA 2M8LA 4XRQA 3H4EA 3NTEA 5JPAA 1AK4C 2KGFA 5HGNA 2M8NA 4XFXA 4LQWC 4E91A 4U0CA 1P7NA 1EM9A 2GONA 1U7KA 2M8PA 1E6JP 3H47A 1M9YC 2PWOA 4WYMA 2XGUA 1L6NA 5HGMA 4XFYA 4U0FA 4U0AA 4B4NA 4QNBA 2V4XA 1M9DC 2X83A 2XDEA 4PH3A 4PH2A 4E92A 2Y4ZA 4HTWA 5HGKA 2JPRA 3P05A 4DGAC 4U0EA 2PXRC 1M9FC 2X2DD 5HGLA 3MGEA 4NX4C 2LF4A
chains in the Genus database with same CATH topology
1QRJA 2PWMA 4XFZA 2X82A 1M9EC 1GWPA 2XGVA 4XROA 1D1DA 1M9XC 2WLVB 4PH0A 1G03A 4INBA 1AFVA 4U0DA 2EIAA 2XGYA 4U0BA 2GOLB 3BP9A 1M9CC 4DGEC 4J93A 1EIAA 2WLVA 5HGOA 2M8LA 4XRQA 3H4EA 3NTEA 5JPAA 1AK4C 2KGFA 5HGNA 2M8NA 4XFXA 4LQWC 4E91A 4U0CA 1P7NA 1EM9A 2GONA 1U7KA 2M8PA 1E6JP 3H47A 1M9YC 2PWOA 4WYMA 2XGUA 1L6NA 5HGMA 4XFYA 4U0FA 4U0AA 4B4NA 4QNBA 2V4XA 1M9DC 2X83A 2XDEA 4PH3A 4PH2A 4E92A 2Y4ZA 4HTWA 5HGKA 2JPRA 3P05A 4DGAC 4U0EA 2PXRC 1M9FC 2X2DD 5HGLA 3MGEA 4NX4C 2LF4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QRJ A;  2PWM A;  4XFZ A;  2X82 A;  1M9E C;  1GWP A;  2XGV A;  4XRO A;  1D1D A;  1M9X C;  2WLV B;  4PH0 A;  1G03 A;  4INB A;  1AFV A;  4U0D A;  2EIA A;  2XGY A;  4U0B A;  2GOL B;  3BP9 A;  1M9C C;  4DGE C;  4J93 A;  1EIA A;  2WLV A;  5HGO A;  2M8L A;  4XRQ A;  3H4E A;  3NTE A;  5JPA A;  1AK4 C;  2KGF A;  5HGN A;  2M8N A;  4XFX A;  4LQW C;  4E91 A;  4U0C A;  1P7N A;  1EM9 A;  2GON A;  1U7K A;  2M8P A;  1E6J P;  3H47 A;  1M9Y C;  2PWO A;  4WYM A;  2XGU A;  1L6N A;  5HGM A;  4XFY A;  4U0F A;  4U0A A;  4B4N A;  4QNB A;  2V4X A;  1M9D C;  2X83 A;  2XDE A;  4PH3 A;  4PH2 A;  4E92 A;  2Y4Z A;  4HTW A;  5HGK A;  2JPR A;  3P05 A;  4DGA C;  4U0E A;  2PXR C;  1M9F C;  2X2D D;  5HGL A;  3MGE A;  4NX4 C;  2LF4 A; 
#chains in the Genus database with same CATH topology
 1QRJ A;  2PWM A;  4XFZ A;  2X82 A;  1M9E C;  1GWP A;  2XGV A;  4XRO A;  1D1D A;  1M9X C;  2WLV B;  4PH0 A;  1G03 A;  4INB A;  1AFV A;  4U0D A;  2EIA A;  2XGY A;  4U0B A;  2GOL B;  3BP9 A;  1M9C C;  4DGE C;  4J93 A;  1EIA A;  2WLV A;  5HGO A;  2M8L A;  4XRQ A;  3H4E A;  3NTE A;  5JPA A;  1AK4 C;  2KGF A;  5HGN A;  2M8N A;  4XFX A;  4LQW C;  4E91 A;  4U0C A;  1P7N A;  1EM9 A;  2GON A;  1U7K A;  2M8P A;  1E6J P;  3H47 A;  1M9Y C;  2PWO A;  4WYM A;  2XGU A;  1L6N A;  5HGM A;  4XFY A;  4U0F A;  4U0A A;  4B4N A;  4QNB A;  2V4X A;  1M9D C;  2X83 A;  2XDE A;  4PH3 A;  4PH2 A;  4E92 A;  2Y4Z A;  4HTW A;  5HGK A;  2JPR A;  3P05 A;  4DGA C;  4U0E A;  2PXR C;  1M9F C;  2X2D D;  5HGL A;  3MGE A;  4NX4 C;  2LF4 A; 
#chains in the Genus database with same CATH homology
 1QRJ A;  2PWM A;  4XFZ A;  2X82 A;  1M9E C;  1GWP A;  2XGV A;  4XRO A;  1D1D A;  1M9X C;  2WLV B;  4PH0 A;  1G03 A;  4INB A;  1AFV A;  4U0D A;  2EIA A;  2XGY A;  4U0B A;  2GOL B;  3BP9 A;  1M9C C;  4DGE C;  4J93 A;  1EIA A;  2WLV A;  5HGO A;  2M8L A;  4XRQ A;  3H4E A;  3NTE A;  5JPA A;  1AK4 C;  2KGF A;  5HGN A;  2M8N A;  4XFX A;  4LQW C;  4E91 A;  4U0C A;  1P7N A;  1EM9 A;  2GON A;  1U7K A;  2M8P A;  1E6J P;  3H47 A;  1M9Y C;  2PWO A;  4WYM A;  2XGU A;  1L6N A;  5HGM A;  4XFY A;  4U0F A;  4U0A A;  4B4N A;  4QNB A;  2V4X A;  1M9D C;  2X83 A;  2XDE A;  4PH3 A;  4PH2 A;  4E92 A;  2Y4Z A;  4HTW A;  5HGK A;  2JPR A;  3P05 A;  4DGA C;  4U0E A;  2PXR C;  1M9F C;  2X2D D;  5HGL A;  3MGE A;  4NX4 C;  2LF4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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