3BQ4A

Crystal structure of ad35 fiber knob
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
192
structure length
192
Chain Sequence
INTLWTGINPPPNCQIVENTNTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKTANIQLRLYFDSSGNLLTEESDLKIPLKNKSSTATSETVASSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLFPLNISIMLNSRMISSNVAYAIQFEWNLNASESPESNIATLTTSPFFFSYITEDD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
molecule keywords Fiber
publication title Conservation of fiber structure and CD46 usage by subgroup B2 adenoviruses
pubmed doi rcsb
source organism Human adenovirus 35
total genus 26
structure length 192
sequence length 192
chains with identical sequence B, D, E, F, G
ec nomenclature
pdb deposition date 2007-12-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00541 Adeno_knob Adenoviral fibre protein (knob domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.90.10 Mainly Beta Sandwich Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) Adenovirus pIV-related, attachment domain 3bq4A00
3O8EA 4WYJA 4ZDGA 4XL8A 2WBWA 1UXAA 1QHVA 4LIYA 3F0YA 2WGTA 2BZUA 3EXVA 2J12A 1UXBA 1UXEA 2QLKA 2WBVA 4K6TA 3L89A 3QNDA 2J2JA 1NOBA 2J1KC 3BQ4A 3N0IA 4K6UA 1P6AA 1KACA 4K6WA 1KNBA 2WGUA 4K6VA 4XQAA 1P69A 3L88A 1QIUA 2BZVA 2W9LC 3CNCA 4XQBA 4ATZA 2O39A 1H7ZA 3EXWA 2WSTA
chains in the Genus database with same CATH superfamily
3O8EA 5MHSA 4WYJA 2OJ5A 4GU3A 2BT8A 4ZDGA 4XL8A 2WBWA 4D62A 1UXAA 1QHVA 2VTWA 4XC5A 4LIYA 3F0YA 2WGTA 2BZUA 1KKEA 2IUMA 3EXVA 2J12A 2BT7A 4ODBA 1UXBA 1UXEA 2QLKA 2WBVA 4K6TA 3ZPFA 4D63A 3L89A 4GU4A 2OJ6A 3QNDA 3ZPEA 2J2JA 1NOBA 2J1KC 3BQ4A 3N0IA 2JJLA 4K6UA 1P6AA 3EOYA 1KACA 4K6WA 1KNBA 2WGUA 4K6VA 2VRSA 4XQAA 1P69A 3L88A 1QIUA 2BZVA 2W9LC 3CNCA 2BSFA 4XQBA 4ATZA 2IUNA 2O39A 4CW8A 3S6XA 1H7ZA 3EXWA 2WSTA
chains in the Genus database with same CATH topology
3O8EA 4WYJA 4ZDGA 4XL8A 2WBWA 1UXAA 1QHVA 4LIYA 3F0YA 2WGTA 2BZUA 3EXVA 2J12A 1UXBA 1UXEA 2QLKA 2WBVA 4K6TA 3L89A 3QNDA 2J2JA 1NOBA 2J1KC 3BQ4A 3N0IA 4K6UA 1P6AA 1KACA 4K6WA 1KNBA 2WGUA 4K6VA 4XQAA 1P69A 3L88A 1QIUA 2BZVA 2W9LC 3CNCA 4XQBA 4ATZA 2O39A 1H7ZA 3EXWA 2WSTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3O8E A;  4WYJ A;  4ZDG A;  4XL8 A;  2WBW A;  1UXA A;  1QHV A;  4LIY A;  3F0Y A;  2WGT A;  2BZU A;  3EXV A;  2J12 A;  1UXB A;  1UXE A;  2QLK A;  2WBV A;  4K6T A;  3L89 A;  3QND A;  2J2J A;  1NOB A;  2J1K C;  3BQ4 A;  3N0I A;  4K6U A;  1P6A A;  1KAC A;  4K6W A;  1KNB A;  2WGU A;  4K6V A;  4XQA A;  1P69 A;  3L88 A;  1QIU A;  2BZV A;  2W9L C;  3CNC A;  4XQB A;  4ATZ A;  2O39 A;  1H7Z A;  3EXW A;  2WST A; 
#chains in the Genus database with same CATH topology
 3O8E A;  5MHS A;  4WYJ A;  2OJ5 A;  4GU3 A;  2BT8 A;  4ZDG A;  4XL8 A;  2WBW A;  4D62 A;  1UXA A;  1QHV A;  2VTW A;  4XC5 A;  4LIY A;  3F0Y A;  2WGT A;  2BZU A;  1KKE A;  2IUM A;  3EXV A;  2J12 A;  2BT7 A;  4ODB A;  1UXB A;  1UXE A;  2QLK A;  2WBV A;  4K6T A;  3ZPF A;  4D63 A;  3L89 A;  4GU4 A;  2OJ6 A;  3QND A;  3ZPE A;  2J2J A;  1NOB A;  2J1K C;  3BQ4 A;  3N0I A;  2JJL A;  4K6U A;  1P6A A;  3EOY A;  1KAC A;  4K6W A;  1KNB A;  2WGU A;  4K6V A;  2VRS A;  4XQA A;  1P69 A;  3L88 A;  1QIU A;  2BZV A;  2W9L C;  3CNC A;  2BSF A;  4XQB A;  4ATZ A;  2IUN A;  2O39 A;  4CW8 A;  3S6X A;  1H7Z A;  3EXW A;  2WST A; 
#chains in the Genus database with same CATH homology
 3O8E A;  4WYJ A;  4ZDG A;  4XL8 A;  2WBW A;  1UXA A;  1QHV A;  4LIY A;  3F0Y A;  2WGT A;  2BZU A;  3EXV A;  2J12 A;  1UXB A;  1UXE A;  2QLK A;  2WBV A;  4K6T A;  3L89 A;  3QND A;  2J2J A;  1NOB A;  2J1K C;  3BQ4 A;  3N0I A;  4K6U A;  1P6A A;  1KAC A;  4K6W A;  1KNB A;  2WGU A;  4K6V A;  4XQA A;  1P69 A;  3L88 A;  1QIU A;  2BZV A;  2W9L C;  3CNC A;  4XQB A;  4ATZ A;  2O39 A;  1H7Z A;  3EXW A;  2WST A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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