3BQBA

Hexagonal kristal form of 2-keto-3-deoxyarabinonate dehydratase
Total Genus 78
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
291
structure length
282
Chain Sequence
MKLFRVVKRGYYISYAILDNSTIIRLDEDPIKALMRYSENKEVLGDRVTGIDYQSLLKSFQINDIRITKPIDPPEVWGSGISYENVAKILGKTIYEKVYDAVRPEIFFKATPNRCVGHGEAIAVRSDSEWTLPEPELAVVLDSNGKILGYTIMDDVSARDLEAENPLYLPQSKIYAGCCAFGPVIVTSDEIKNPYSLDITLKIVREGRVFFEGSVNTNKMRRKIEEQIQYLIRDNPIPDGTILTTGTAIVPGRDKGLKDEDIVEITISNIGTLITPVKKRRK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Putative uncharacterized protein
publication title Structural insight into substrate binding and catalysis of a novel 2-keto-3-deoxy-D-arabinonate dehydratase illustrates common mechanistic features of the FAH superfamily
pubmed doi rcsb
source organism Sulfolobus solfataricus
molecule tags Lyase
total genus 78
structure length 282
sequence length 291
chains with identical sequence X, Y, Z
ec nomenclature ec 4.2.1.141: 2-dehydro-3-deoxy-D-arabinonate dehydratase.
pdb deposition date 2007-12-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01557 FAA_hydrolase Fumarylacetoacetate (FAA) hydrolase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.330.40 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 3bqbA01
3.90.850.10 Alpha Beta Alpha-Beta Complex Fumarylacetoacetate hydrolase; domain 2 Fumarylacetoacetase-like, C-terminal domain 3bqbA02
4DBFA 2HZYA 5D2JA 5D2GA 1NR9A 5D2KA 1NKQA 2Q18X 1SAWA 3QDFA 1GTTA 4QKUA 4DBHA 3LZKA 3V77A 1WZOA 3R6OA 5D2IA 5D2HA 2EB5A 1HYOA 4PFZA 2EB4A 1QCOA 3S52A 1I7OA 4MAQA 2Q1DX 2DFUA 2Q19X 2WQTA 2Q1CX 5D2FA 1QQJA 1QCNA 3BQBA 2EB6A 1SV6A 3RR6A 2Q1AX
chains in the Genus database with same CATH superfamily
2JV2A 2YVLA 2HZYA 5CD1A 1NR9A 2PJHB 2Q18X 1I9GA 4DBHA 2QQRA 1WZOA 2B25A 2EB5A 1QDNA 5FTMA 2GF7A 4UC4A 5B6CA 3FPTA 5D6WA 2WQTA 2YUJA 1QQJA 2MM2A 1QCNA 4KDLA 1CR5A 1WLFA 5EPPA 4DBFA 1ZC1A 3ZJVA 5C1BA 1NKQA 3HU3A 3LHDA 4KDIA 1GTTA 4QKUA 2XDPA 3ZGZA 3FPUA 1CZ5A 4CQNA 3ZJTA 3S52A 3HU1A 5GLFA 2Q19X 4ARCA 3QC8A 3QQ7A 5DYGA 5D2FA 3HU2A 3BQBA 5DYIA 1SV6A 5FTNA 3RR6A 2LW6A 2Q1AX 2KY9A 5D2JA 1O54A 1SAWA 3QDFA 2QQSA 3ZJUA 5D6YA 3MB5A 4KODA 5D2IA 3R6OA 5EQJB 4PFZA 4AS1A 1I7OA 1QCSA 2Q1DX 2DFUA 3QWZA 3TIWA 5CCXA 5FTKA 3CF2A 2MM0A 4FIBA 5D2KA 4AQ7A 1E32A 3FPRA 2PWYA 5D2GA 5FTLA 3QQ8A 5FTJA 3LZKA 3V77A 1CZ4A 5CCBA 5D2HA 1HYOA 4KLNA 2EB4A 4RV0A 1QCOA 4MAQA 1S3SA 2Q1CX 4KO8A 5D6XA 2EB6A 3LGAA 4ARIA 2GFAA 5C18A 5ERGB 1R7RA
chains in the Genus database with same CATH topology
2JV2A 2YVLA 2HZYA 5CD1A 1NR9A 2PJHB 2Q18X 1I9GA 4DBHA 2QQRA 1WZOA 2B25A 2EB5A 1QDNA 5FTMA 2GF7A 4UC4A 5B6CA 3FPTA 5D6WA 2WQTA 2YUJA 1QQJA 2MM2A 1QCNA 4KDLA 1CR5A 1WLFA 5EPPA 4DBFA 1ZC1A 3ZJVA 5C1BA 1NKQA 3HU3A 3LHDA 4KDIA 1GTTA 4QKUA 2XDPA 3ZGZA 3FPUA 1CZ5A 4CQNA 3ZJTA 3S52A 3HU1A 5GLFA 2Q19X 4ARCA 3QC8A 3QQ7A 5DYGA 5D2FA 3HU2A 3BQBA 5DYIA 1SV6A 5FTNA 3RR6A 2LW6A 2Q1AX 2KY9A 5D2JA 1O54A 1SAWA 3QDFA 2QQSA 3ZJUA 5D6YA 3MB5A 4KODA 5D2IA 3R6OA 5EQJB 4PFZA 4AS1A 1I7OA 1QCSA 2Q1DX 2DFUA 3QWZA 3TIWA 5CCXA 5FTKA 3CF2A 2MM0A 4FIBA 5D2KA 4AQ7A 1E32A 3FPRA 2PWYA 5D2GA 5FTLA 3QQ8A 5FTJA 3LZKA 3V77A 1CZ4A 5CCBA 5D2HA 1HYOA 4KLNA 2EB4A 4RV0A 1QCOA 4MAQA 1S3SA 2Q1CX 4KO8A 5D6XA 2EB6A 3LGAA 4ARIA 2GFAA 5C18A 5ERGB 1R7RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DBF A;  2HZY A;  5D2J A;  5D2G A;  1NR9 A;  5D2K A;  1NKQ A;  2Q18 X;  1SAW A;  3QDF A;  1GTT A;  4QKU A;  4DBH A;  3LZK A;  3V77 A;  1WZO A;  3R6O A;  5D2I A;  5D2H A;  2EB5 A;  1HYO A;  4PFZ A;  2EB4 A;  1QCO A;  3S52 A;  1I7O A;  4MAQ A;  2Q1D X;  2DFU A;  2Q19 X;  2WQT A;  2Q1C X;  5D2F A;  1QQJ A;  1QCN A;  3BQB A;  2EB6 A;  1SV6 A;  3RR6 A;  2Q1A X; 
#chains in the Genus database with same CATH topology
 2JV2 A;  2YVL A;  2HZY A;  5CD1 A;  1NR9 A;  2PJH B;  2Q18 X;  1I9G A;  4DBH A;  2QQR A;  1WZO A;  2B25 A;  2EB5 A;  1QDN A;  5FTM A;  2GF7 A;  4UC4 A;  5B6C A;  3FPT A;  5D6W A;  2WQT A;  2YUJ A;  1QQJ A;  2MM2 A;  1QCN A;  4KDL A;  1CR5 A;  1WLF A;  5EPP A;  4DBF A;  1ZC1 A;  3ZJV A;  5C1B A;  1NKQ A;  3HU3 A;  3LHD A;  4KDI A;  1GTT A;  4QKU A;  2XDP A;  3ZGZ A;  3FPU A;  1CZ5 A;  4CQN A;  3ZJT A;  3S52 A;  3HU1 A;  5GLF A;  2Q19 X;  4ARC A;  3QC8 A;  3QQ7 A;  5DYG A;  5D2F A;  3HU2 A;  3BQB A;  5DYI A;  1SV6 A;  5FTN A;  3RR6 A;  2LW6 A;  2Q1A X;  2KY9 A;  5D2J A;  1O54 A;  1SAW A;  3QDF A;  2QQS A;  3ZJU A;  5D6Y A;  3MB5 A;  4KOD A;  5D2I A;  3R6O A;  5EQJ B;  4PFZ A;  4AS1 A;  1I7O A;  1QCS A;  2Q1D X;  2DFU A;  3QWZ A;  3TIW A;  5CCX A;  5FTK A;  3CF2 A;  2MM0 A;  4FIB A;  5D2K A;  4AQ7 A;  1E32 A;  3FPR A;  2PWY A;  5D2G A;  5FTL A;  3QQ8 A;  5FTJ A;  3LZK A;  3V77 A;  1CZ4 A;  5CCB A;  5D2H A;  1HYO A;  4KLN A;  2EB4 A;  4RV0 A;  1QCO A;  4MAQ A;  1S3S A;  2Q1C X;  4KO8 A;  5D6X A;  2EB6 A;  3LGA A;  4ARI A;  2GFA A;  5C18 A;  5ERG B;  1R7R A; 
#chains in the Genus database with same CATH homology
 2JV2 A;  2YVL A;  2HZY A;  5CD1 A;  1NR9 A;  2PJH B;  2Q18 X;  1I9G A;  4DBH A;  2QQR A;  1WZO A;  2B25 A;  2EB5 A;  1QDN A;  5FTM A;  2GF7 A;  4UC4 A;  5B6C A;  3FPT A;  5D6W A;  2WQT A;  2YUJ A;  1QQJ A;  2MM2 A;  1QCN A;  4KDL A;  1CR5 A;  1WLF A;  5EPP A;  4DBF A;  1ZC1 A;  3ZJV A;  5C1B A;  1NKQ A;  3HU3 A;  3LHD A;  4KDI A;  1GTT A;  4QKU A;  2XDP A;  3ZGZ A;  3FPU A;  1CZ5 A;  4CQN A;  3ZJT A;  3S52 A;  3HU1 A;  5GLF A;  2Q19 X;  4ARC A;  3QC8 A;  3QQ7 A;  5DYG A;  5D2F A;  3HU2 A;  3BQB A;  5DYI A;  1SV6 A;  5FTN A;  3RR6 A;  2LW6 A;  2Q1A X;  2KY9 A;  5D2J A;  1O54 A;  1SAW A;  3QDF A;  2QQS A;  3ZJU A;  5D6Y A;  3MB5 A;  4KOD A;  5D2I A;  3R6O A;  5EQJ B;  4PFZ A;  4AS1 A;  1I7O A;  1QCS A;  2Q1D X;  2DFU A;  3QWZ A;  3TIW A;  5CCX A;  5FTK A;  3CF2 A;  2MM0 A;  4FIB A;  5D2K A;  4AQ7 A;  1E32 A;  3FPR A;  2PWY A;  5D2G A;  5FTL A;  3QQ8 A;  5FTJ A;  3LZK A;  3V77 A;  1CZ4 A;  5CCB A;  5D2H A;  1HYO A;  4KLN A;  2EB4 A;  4RV0 A;  1QCO A;  4MAQ A;  1S3S A;  2Q1C X;  4KO8 A;  5D6X A;  2EB6 A;  3LGA A;  4ARI A;  2GFA A;  5C18 A;  5ERG B;  1R7R A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...