3BQBA

Hexagonal kristal form of 2-keto-3-deoxyarabinonate dehydratase
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
291
structure length
282
Chain Sequence
MKLFRVVKRGYYISYAILDNSTIIRLDEDPIKALMRYSENKEVLGDRVTGIDYQSLLKSFQINDIRITKPIDPPEVWGSGISYENVAKILGKTIYEKVYDAVRPEIFFKATPNRCVGHGEAIAVRSDSEWTLPEPELAVVLDSNGKILGYTIMDDVSARDLEAENPLYLPQSKIYAGCCAFGPVIVTSDEIKNPYSLDITLKIVREGRVFFEGSVNTNKMRRKIEEQIQYLIRDNPIPDGTILTTGTAIVPGRDKGLKDEDIVEITISNIGTLITPVKKRRK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural insight into substrate binding and catalysis of a novel 2-keto-3-deoxy-D-arabinonate dehydratase illustrates common mechanistic features of the FAH superfamily
pubmed doi rcsb
source organism Sulfolobus solfataricus
molecule tags Lyase
molecule keywords Putative uncharacterized protein
total genus 78
structure length 282
sequence length 291
chains with identical sequence X, Y, Z
ec nomenclature ec 4.2.1.141: 2-dehydro-3-deoxy-D-arabinonate dehydratase.
pdb deposition date 2007-12-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01557 FAA_hydrolase Fumarylacetoacetate (FAA) hydrolase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.330.40 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 3bqbA01
3.90.850.10 Alpha Beta Alpha-Beta Complex Fumarylacetoacetate hydrolase; domain 2 Fumarylacetoacetase-like, C-terminal domain 3bqbA02
1QCNA 3LZKA 2EB4A 4DBFA 1GTTA 1NR9A 4QKUA 3RR6A 3R6OA 1I7OA 1WZOA 5D2FA 1SAWA 5D2HA 3BQBA 2HZYA 3S52A 4DBHA 4PFZA 2Q1AX 1HYOA 4MAQA 1QQJA 2DFUA 3V77A 1NKQA 2WQTA 2Q19X 3QDFA 5D2KA 2EB5A 2Q18X 1SV6A 2Q1CX 2Q1DX 2EB6A 5D2IA 1QCOA 5D2GA 5D2JA
chains in the Genus database with same CATH superfamily
1E32A 3LZKA 4DBFA 3HU3A 1ZC1A 4KLNA 2YVLA 3QWZA 5EQJB 5D2FA 5D2HA 3ZJTA 2HZYA 2XDPA 4DBHA 5CCBA 2QQSA 2Q1AX 1HYOA 2DFUA 5FTMA 3V77A 1NKQA 2Q19X 3QDFA 2EB5A 1SV6A 5DYIA 4CQNA 1QCSA 2LW6A 5CCXA 3QQ8A 1CR5A 2EB4A 2GF7A 3HU2A 3QC8A 1NR9A 4QKUA 5D6XA 3RR6A 3LGAA 2YUJA 3R6OA 2MM0A 1SAWA 5GLFA 1CZ4A 2GFAA 5FTNA 3ZJVA 1QQJA 1S3SA 1WLFA 3CF2A 4ARCA 1R7RA 2Q18X 1CZ5A 2KY9A 3ZJUA 2PJHB 5FTJA 2EB6A 5D2IA 2B25A 5D2GA 5ERGB 1QCNA 3MB5A 2PWYA 1GTTA 3TIWA 3QQ7A 5D6WA 3S52A 4FIBA 5CD1A 4PFZA 4MAQA 4KDLA 5DYGA 3FPUA 4AS1A 3ZGZA 1QDNA 5EPPA 2Q1CX 4KODA 2Q1DX 4AQ7A 5D2JA 1O54A 2MM2A 4KO8A 5B6CA 4UC4A 1I7OA 1WZOA 3BQBA 5C1BA 2JV2A 4KDIA 3FPRA 2QQRA 3FPTA 4RV0A 4ARIA 5FTKA 3HU1A 2WQTA 3LHDA 5D2KA 1I9GA 5FTLA 5D6YA 1QCOA 5C18A
chains in the Genus database with same CATH topology
1E32A 3LZKA 4DBFA 3HU3A 1ZC1A 4KLNA 2YVLA 3QWZA 5EQJB 5D2FA 5D2HA 3ZJTA 2HZYA 2XDPA 4DBHA 5CCBA 2QQSA 2Q1AX 1HYOA 2DFUA 5FTMA 3V77A 1NKQA 2Q19X 3QDFA 2EB5A 1SV6A 5DYIA 4CQNA 1QCSA 2LW6A 5CCXA 3QQ8A 1CR5A 2EB4A 2GF7A 3HU2A 3QC8A 1NR9A 4QKUA 5D6XA 3RR6A 3LGAA 2YUJA 3R6OA 2MM0A 1SAWA 5GLFA 1CZ4A 2GFAA 5FTNA 3ZJVA 1QQJA 1S3SA 1WLFA 3CF2A 4ARCA 1R7RA 2Q18X 1CZ5A 2KY9A 3ZJUA 2PJHB 5FTJA 2EB6A 5D2IA 2B25A 5D2GA 5ERGB 1QCNA 3MB5A 2PWYA 1GTTA 3TIWA 3QQ7A 5D6WA 3S52A 4FIBA 5CD1A 4PFZA 4MAQA 4KDLA 5DYGA 3FPUA 4AS1A 3ZGZA 1QDNA 5EPPA 2Q1CX 4KODA 2Q1DX 4AQ7A 5D2JA 1O54A 2MM2A 4KO8A 5B6CA 4UC4A 1I7OA 1WZOA 3BQBA 5C1BA 2JV2A 4KDIA 3FPRA 2QQRA 3FPTA 4RV0A 4ARIA 5FTKA 3HU1A 2WQTA 3LHDA 5D2KA 1I9GA 5FTLA 5D6YA 1QCOA 5C18A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QCN A;  3LZK A;  2EB4 A;  4DBF A;  1GTT A;  1NR9 A;  4QKU A;  3RR6 A;  3R6O A;  1I7O A;  1WZO A;  5D2F A;  1SAW A;  5D2H A;  3BQB A;  2HZY A;  3S52 A;  4DBH A;  4PFZ A;  2Q1A X;  1HYO A;  4MAQ A;  1QQJ A;  2DFU A;  3V77 A;  1NKQ A;  2WQT A;  2Q19 X;  3QDF A;  5D2K A;  2EB5 A;  2Q18 X;  1SV6 A;  2Q1C X;  2Q1D X;  2EB6 A;  5D2I A;  1QCO A;  5D2G A;  5D2J A; 
#chains in the Genus database with same CATH topology
 1E32 A;  3LZK A;  4DBF A;  3HU3 A;  1ZC1 A;  4KLN A;  2YVL A;  3QWZ A;  5EQJ B;  5D2F A;  5D2H A;  3ZJT A;  2HZY A;  2XDP A;  4DBH A;  5CCB A;  2QQS A;  2Q1A X;  1HYO A;  2DFU A;  5FTM A;  3V77 A;  1NKQ A;  2Q19 X;  3QDF A;  2EB5 A;  1SV6 A;  5DYI A;  4CQN A;  1QCS A;  2LW6 A;  5CCX A;  3QQ8 A;  1CR5 A;  2EB4 A;  2GF7 A;  3HU2 A;  3QC8 A;  1NR9 A;  4QKU A;  5D6X A;  3RR6 A;  3LGA A;  2YUJ A;  3R6O A;  2MM0 A;  1SAW A;  5GLF A;  1CZ4 A;  2GFA A;  5FTN A;  3ZJV A;  1QQJ A;  1S3S A;  1WLF A;  3CF2 A;  4ARC A;  1R7R A;  2Q18 X;  1CZ5 A;  2KY9 A;  3ZJU A;  2PJH B;  5FTJ A;  2EB6 A;  5D2I A;  2B25 A;  5D2G A;  5ERG B;  1QCN A;  3MB5 A;  2PWY A;  1GTT A;  3TIW A;  3QQ7 A;  5D6W A;  3S52 A;  4FIB A;  5CD1 A;  4PFZ A;  4MAQ A;  4KDL A;  5DYG A;  3FPU A;  4AS1 A;  3ZGZ A;  1QDN A;  5EPP A;  2Q1C X;  4KOD A;  2Q1D X;  4AQ7 A;  5D2J A;  1O54 A;  2MM2 A;  4KO8 A;  5B6C A;  4UC4 A;  1I7O A;  1WZO A;  3BQB A;  5C1B A;  2JV2 A;  4KDI A;  3FPR A;  2QQR A;  3FPT A;  4RV0 A;  4ARI A;  5FTK A;  3HU1 A;  2WQT A;  3LHD A;  5D2K A;  1I9G A;  5FTL A;  5D6Y A;  1QCO A;  5C18 A; 
#chains in the Genus database with same CATH homology
 1E32 A;  3LZK A;  4DBF A;  3HU3 A;  1ZC1 A;  4KLN A;  2YVL A;  3QWZ A;  5EQJ B;  5D2F A;  5D2H A;  3ZJT A;  2HZY A;  2XDP A;  4DBH A;  5CCB A;  2QQS A;  2Q1A X;  1HYO A;  2DFU A;  5FTM A;  3V77 A;  1NKQ A;  2Q19 X;  3QDF A;  2EB5 A;  1SV6 A;  5DYI A;  4CQN A;  1QCS A;  2LW6 A;  5CCX A;  3QQ8 A;  1CR5 A;  2EB4 A;  2GF7 A;  3HU2 A;  3QC8 A;  1NR9 A;  4QKU A;  5D6X A;  3RR6 A;  3LGA A;  2YUJ A;  3R6O A;  2MM0 A;  1SAW A;  5GLF A;  1CZ4 A;  2GFA A;  5FTN A;  3ZJV A;  1QQJ A;  1S3S A;  1WLF A;  3CF2 A;  4ARC A;  1R7R A;  2Q18 X;  1CZ5 A;  2KY9 A;  3ZJU A;  2PJH B;  5FTJ A;  2EB6 A;  5D2I A;  2B25 A;  5D2G A;  5ERG B;  1QCN A;  3MB5 A;  2PWY A;  1GTT A;  3TIW A;  3QQ7 A;  5D6W A;  3S52 A;  4FIB A;  5CD1 A;  4PFZ A;  4MAQ A;  4KDL A;  5DYG A;  3FPU A;  4AS1 A;  3ZGZ A;  1QDN A;  5EPP A;  2Q1C X;  4KOD A;  2Q1D X;  4AQ7 A;  5D2J A;  1O54 A;  2MM2 A;  4KO8 A;  5B6C A;  4UC4 A;  1I7O A;  1WZO A;  3BQB A;  5C1B A;  2JV2 A;  4KDI A;  3FPR A;  2QQR A;  3FPT A;  4RV0 A;  4ARI A;  5FTK A;  3HU1 A;  2WQT A;  3LHD A;  5D2K A;  1I9G A;  5FTL A;  5D6Y A;  1QCO A;  5C18 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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