3BQBA

Hexagonal kristal form of 2-keto-3-deoxyarabinonate dehydratase
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
291
structure length
282
Chain Sequence
b'MKLFRVVKRGYYISYAILDNSTIIRLDEDPIKALMRYSENKEVLGDRVTGIDYQSLLKSFQINDIRITKPIDPPEVWGSGISYENVAKILGKTIYEKVYDAVRPEIFFKATPNRCVGHGEAIAVRSDSEWTLPEPELAVVLDSNGKILGYTIMDDVSARDLEAENPLYLPQSKIYAGCCAFGPVIVTSDEIKNPYSLDITLKIVREGRVFFEGSVNTNKMRRKIEEQIQYLIRDNPIPDGTILTTGTAIVPGRDKGLKDEDIVEITISNIGTLITPVKKRRK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Putative uncharacterized protein
publication title Structural insight into substrate binding and catalysis of a novel 2-keto-3-deoxy-D-arabinonate dehydratase illustrates common mechanistic features of the FAH superfamily
pubmed doi rcsb
source organism Sulfolobus solfataricus
molecule tags Lyase
total genus 78
structure length 282
sequence length 291
chains with identical sequence X, Y, Z
ec nomenclature ec 4.2.1.141: 2-dehydro-3-deoxy-D-arabinonate dehydratase.
pdb deposition date 2007-12-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01557 FAA_hydrolase Fumarylacetoacetate (FAA) hydrolase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.330.40 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 3bqbA01
3.90.850.10 Alpha Beta Alpha-Beta Complex Fumarylacetoacetate hydrolase; domain 2 Fumarylacetoacetase-like, C-terminal domain 3bqbA02
4PFZA 4DBFA 2EB5A 1NR9A 1NKQA 5D2JA 4DBHA 2Q1DX 5D2GA 2EB6A 2HZYA 1QCNA 2Q1AX 2Q1CX 1HYOA 1SAWA 3QDFA 3BQBA 2DFUA 3V77A 3LZKA 4MAQA 5D2IA 4QKUA 5D2HA 5D2FA 1GTTA 1QCOA 2Q19X 3RR6A 2Q18X 1I7OA 1WZOA 3R6OA 5D2KA 3S52A 1SV6A 2WQTA 2EB4A 1QQJA
chains in the Genus database with same CATH superfamily
4DBFA 1ZC1A 5D2JA 2QQSA 5B6CA 2EB6A 1QCNA 2Q1AX 4KDIA 5D6XA 5GLFA 1SAWA 3V77A 5D2IA 1CZ5A 2XDPA 5D2HA 5D2FA 1QCSA 2GFAA 1CZ4A 1QCOA 2PWYA 5D6WA 3HU1A 4FIBA 1WZOA 1O54A 3ZJUA 4AS1A 2EB5A 1NR9A 1NKQA 5DYGA 2HZYA 3QQ7A 2Q1CX 3QQ8A 2KY9A 3FPUA 1HYOA 3LGAA 5CCXA 4KO8A 3FPTA 5C1BA 4AQ7A 3QWZA 3QC8A 3LZKA 4MAQA 1QDNA 5CCBA 5FTJA 2YVLA 2Q18X 4UC4A 3CF2A 3S52A 2JV2A 3LHDA 4KLNA 2QQRA 1QQJA 5FTKA 5EPPA 1WLFA 5D2GA 1E32A 5EQJB 2B25A 3ZGZA 3MB5A 4KDLA 3ZJTA 5FTNA 3QDFA 3BQBA 2DFUA 5ERGB 2PJHB 1S3SA 3HU3A 2MM0A 2Q19X 3RR6A 5FTLA 1I9GA 4RV0A 4ARIA 2MM2A 1R7RA 3FPRA 4ARCA 2WQTA 5CD1A 5FTMA 4PFZA 2YUJA 4DBHA 2Q1DX 3ZJVA 4KODA 2GF7A 3TIWA 4CQNA 4QKUA 5DYIA 3HU2A 2LW6A 1GTTA 1I7OA 5C18A 5D6YA 1CR5A 3R6OA 5D2KA 1SV6A 2EB4A
chains in the Genus database with same CATH topology
4DBFA 1ZC1A 5D2JA 2QQSA 5B6CA 2EB6A 1QCNA 2Q1AX 4KDIA 5D6XA 5GLFA 1SAWA 3V77A 5D2IA 1CZ5A 2XDPA 5D2HA 5D2FA 1QCSA 2GFAA 1CZ4A 1QCOA 2PWYA 5D6WA 3HU1A 4FIBA 1WZOA 1O54A 3ZJUA 4AS1A 2EB5A 1NR9A 1NKQA 5DYGA 2HZYA 3QQ7A 2Q1CX 3QQ8A 2KY9A 3FPUA 1HYOA 3LGAA 5CCXA 4KO8A 3FPTA 5C1BA 4AQ7A 3QWZA 3QC8A 3LZKA 4MAQA 1QDNA 5CCBA 5FTJA 2YVLA 2Q18X 4UC4A 3CF2A 3S52A 2JV2A 3LHDA 4KLNA 2QQRA 1QQJA 5FTKA 5EPPA 1WLFA 5D2GA 1E32A 5EQJB 2B25A 3ZGZA 3MB5A 4KDLA 3ZJTA 5FTNA 3QDFA 3BQBA 2DFUA 5ERGB 2PJHB 1S3SA 3HU3A 2MM0A 2Q19X 3RR6A 5FTLA 1I9GA 4RV0A 4ARIA 2MM2A 1R7RA 3FPRA 4ARCA 2WQTA 5CD1A 5FTMA 4PFZA 2YUJA 4DBHA 2Q1DX 3ZJVA 4KODA 2GF7A 3TIWA 4CQNA 4QKUA 5DYIA 3HU2A 2LW6A 1GTTA 1I7OA 5C18A 5D6YA 1CR5A 3R6OA 5D2KA 1SV6A 2EB4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PFZ A;  4DBF A;  2EB5 A;  1NR9 A;  1NKQ A;  5D2J A;  4DBH A;  2Q1D X;  5D2G A;  2EB6 A;  2HZY A;  1QCN A;  2Q1A X;  2Q1C X;  1HYO A;  1SAW A;  3QDF A;  3BQB A;  2DFU A;  3V77 A;  3LZK A;  4MAQ A;  5D2I A;  4QKU A;  5D2H A;  5D2F A;  1GTT A;  1QCO A;  2Q19 X;  3RR6 A;  2Q18 X;  1I7O A;  1WZO A;  3R6O A;  5D2K A;  3S52 A;  1SV6 A;  2WQT A;  2EB4 A;  1QQJ A; 
#chains in the Genus database with same CATH topology
 4DBF A;  1ZC1 A;  5D2J A;  2QQS A;  5B6C A;  2EB6 A;  1QCN A;  2Q1A X;  4KDI A;  5D6X A;  5GLF A;  1SAW A;  3V77 A;  5D2I A;  1CZ5 A;  2XDP A;  5D2H A;  5D2F A;  1QCS A;  2GFA A;  1CZ4 A;  1QCO A;  2PWY A;  5D6W A;  3HU1 A;  4FIB A;  1WZO A;  1O54 A;  3ZJU A;  4AS1 A;  2EB5 A;  1NR9 A;  1NKQ A;  5DYG A;  2HZY A;  3QQ7 A;  2Q1C X;  3QQ8 A;  2KY9 A;  3FPU A;  1HYO A;  3LGA A;  5CCX A;  4KO8 A;  3FPT A;  5C1B A;  4AQ7 A;  3QWZ A;  3QC8 A;  3LZK A;  4MAQ A;  1QDN A;  5CCB A;  5FTJ A;  2YVL A;  2Q18 X;  4UC4 A;  3CF2 A;  3S52 A;  2JV2 A;  3LHD A;  4KLN A;  2QQR A;  1QQJ A;  5FTK A;  5EPP A;  1WLF A;  5D2G A;  1E32 A;  5EQJ B;  2B25 A;  3ZGZ A;  3MB5 A;  4KDL A;  3ZJT A;  5FTN A;  3QDF A;  3BQB A;  2DFU A;  5ERG B;  2PJH B;  1S3S A;  3HU3 A;  2MM0 A;  2Q19 X;  3RR6 A;  5FTL A;  1I9G A;  4RV0 A;  4ARI A;  2MM2 A;  1R7R A;  3FPR A;  4ARC A;  2WQT A;  5CD1 A;  5FTM A;  4PFZ A;  2YUJ A;  4DBH A;  2Q1D X;  3ZJV A;  4KOD A;  2GF7 A;  3TIW A;  4CQN A;  4QKU A;  5DYI A;  3HU2 A;  2LW6 A;  1GTT A;  1I7O A;  5C18 A;  5D6Y A;  1CR5 A;  3R6O A;  5D2K A;  1SV6 A;  2EB4 A; 
#chains in the Genus database with same CATH homology
 4DBF A;  1ZC1 A;  5D2J A;  2QQS A;  5B6C A;  2EB6 A;  1QCN A;  2Q1A X;  4KDI A;  5D6X A;  5GLF A;  1SAW A;  3V77 A;  5D2I A;  1CZ5 A;  2XDP A;  5D2H A;  5D2F A;  1QCS A;  2GFA A;  1CZ4 A;  1QCO A;  2PWY A;  5D6W A;  3HU1 A;  4FIB A;  1WZO A;  1O54 A;  3ZJU A;  4AS1 A;  2EB5 A;  1NR9 A;  1NKQ A;  5DYG A;  2HZY A;  3QQ7 A;  2Q1C X;  3QQ8 A;  2KY9 A;  3FPU A;  1HYO A;  3LGA A;  5CCX A;  4KO8 A;  3FPT A;  5C1B A;  4AQ7 A;  3QWZ A;  3QC8 A;  3LZK A;  4MAQ A;  1QDN A;  5CCB A;  5FTJ A;  2YVL A;  2Q18 X;  4UC4 A;  3CF2 A;  3S52 A;  2JV2 A;  3LHD A;  4KLN A;  2QQR A;  1QQJ A;  5FTK A;  5EPP A;  1WLF A;  5D2G A;  1E32 A;  5EQJ B;  2B25 A;  3ZGZ A;  3MB5 A;  4KDL A;  3ZJT A;  5FTN A;  3QDF A;  3BQB A;  2DFU A;  5ERG B;  2PJH B;  1S3S A;  3HU3 A;  2MM0 A;  2Q19 X;  3RR6 A;  5FTL A;  1I9G A;  4RV0 A;  4ARI A;  2MM2 A;  1R7R A;  3FPR A;  4ARC A;  2WQT A;  5CD1 A;  5FTM A;  4PFZ A;  2YUJ A;  4DBH A;  2Q1D X;  3ZJV A;  4KOD A;  2GF7 A;  3TIW A;  4CQN A;  4QKU A;  5DYI A;  3HU2 A;  2LW6 A;  1GTT A;  1I7O A;  5C18 A;  5D6Y A;  1CR5 A;  3R6O A;  5D2K A;  1SV6 A;  2EB4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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