3BRZA

Crystal structure of the pseudomonas putida toluene transporter todx
Total Genus 90
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
90
sequence length
433
structure length
404
Chain Sequence
TQVFDLEGYGAISRAMGGTSSSYYTGNAALISNPATLSFAPDGNQFELGLDVVTTDIKVHGAEAKSSTPYVGPQLSYVAQLDDWRFGAGLFVSSGLGTEYGSKSFLSQTENGIQTSFDNSSRLIVLRAPIGFSYQATSKLTFGASVDLVWTSLNLELLLPSSQVGALTAQGNLSGGLVPSLAGFVGTGGAAHFSLSAGGAVDAVGWGGRLGLTYKLTDNTVLGAMYNFKTSVGDLEGKATLSAISGDGAVLPLDGDIRVKNFEMPASLTLGLAHQFNERWVVAADIKRAYWGDVMDSMNVAFISQLGGIDVALPHRYQDITVASIGTAYKYNNDLTLRAGYSYAQLILPVIPAYLKRHVTFGGEYDFDKDSRINLAISFGLRERVMLRQSHSQINAVVSYSKNF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords TodX
publication title Outer-membrane transport of aromatic hydrocarbons as a first step in biodegradation.
pubmed doi rcsb
source organism Pseudomonas putida
total genus 90
structure length 404
sequence length 433
ec nomenclature
pdb deposition date 2007-12-21
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.60 Mainly Beta Beta Barrel Porin Outer membrane protein transport protein (OMPP1/FadL/TodX) 3brzA00
3PGRA 3PGUA 1T1LA 2R8AA 3BRYA 3DWOX 3DWNA 3PF1A 3BS0A 2R4PA 3PGSA 1T16A 2R4LA 2R88A 2R89A 2R4NA 3BRZA 2R4OA
chains in the Genus database with same CATH superfamily
4FT6A 3SZDA 2Y0LA 2O4VA 2R8AA 3HOEA 4N74A 3HW9A 5G3AA 4FMSA 4U9CA 5ADXL 2Y0KA 3AAEA 1QJ9A 3AA1A 1ORMA 4AZLA 3A0BO 3SY9A 5IYUA 2ERVA 2OMFA 2XE3A 4RLBA 1HXTA 2M06A 1P4TA 2QTKA 1MM4A 4O3XB 4AFKA 4AUIA 5B66O 2XG6A 5GV0A 3UPGA 3A2SX 5H2FO 5G39A 5G26A 2MHLA 4GCQA 4KR4A 4LSFA 2N2LA 5E79O 4K3CA 5D5DA 2M07A 3SZVA 4AYNA 3T24A 2JMMA 4N58A 3KVDD 3AA7A 3VE1A 4D65A 1GFPA 2XE2A 2Y7SA 2XMXA 3EMNX 3JTYA 1PRNA 5T5FA 2XE5A 4C00A 4D5UA 4N59A 2Y2XA 5AFUL 1E54A 2F1CX 1YS5A 5KAIO 3RBHA 2XTQA 2KC0A 4JFBA 4AYEC 2R4NA 3AAAB 4O49A 4RLCA 2AXTO 1GFOA 4RL9A 5KAFO 4Z3TA 3QRCA 3WU2O 1S5LO 2K0LA 2KDYA 3PF1A 3WI5A 3C5OA 2F1VA 3HOLA 3PGSA 4C4VB 2WJRA 4KRAA 3K19A 2IWVA 4UB8O 5DL7A 1OSMA 4F4BA 1ZHXA 1HXXA 2GE4A 5TISO 2X9KA 3LK2B 5PRNA 4JCHA 1MPFA 4RJXA 3LK3A 4AKRB 4K3BA 3POXA 5ADXK 1HXUA 1ZHTA 4PUXA 4XNKA 1GFQA 4O3WA 3PQSA 3TZGA 3PGUA 1BXWA 4B61A 1H6S1 1THQA 4CTDA 1ZHZA 4FSPA 4FESA 3AA1B 5GTHO 3DZMA 3BS0A 2N2MA 4GCPA 4O4XA 4FQEA 4G75A 4FZMA 3VY8X 1IZNB 2ZLDA 3VE2A 8PRNA 3NSGA 5DL6A 1GFNA 3A0HO 3LK42 3HWBA 2R89A 3PQUA 1BT9A 3AAAA 5AFUK 2KZ7B 3GP6A 3NJTA 2ZFGA 4FSOA 3LK41 4GCSA 2KXPB 3AA6B 3VY9X 1Q9GA 3AA0B 5JDPA 3AA7B 4XNLA 1PHOA 2R88A 4AYMC 2JQYA 4C69X 2YNKA 4C4VA 3QRAA 4RJWA 4FRXA 3FYXA 4AYID 3VZTX 2W80C 3BRYA 1QJPA 3POUA 4G76A 2Y0HA 3T0SA 2FGRA 3DA3A 2X27X 1MM5A 3LK2A 2PRNA 2XTRA 4FOZA 2F1TA 2K4TA 3VZUX 3POQA 2PORA 4GF4A 3AAEB 3WI4A 2R4PA 2ODJA 2XE1A 2R4OA 1OPFA 3UU2A 4O3ZA 1T1LA 4LSEA 3VZWX 4AKMA 1G90A 4GHBA 4PJ0O 3DWNA 4KR8A 1GFMA 2FGQX 2MNHA 4FZNA 4N75A 1T16A 3SY7A 3UAQA 2R4LA 5B5EO 7PRNA 1Q9FA 3LK3B 3SYSA 4E1SA 4FUVA 3JCUO 1IZNA 6PRNA 1ZHWA 3DWOX 2YPVA 2J1NA 5GTIO 4D64A 5G38A 3DA4A 3PGRA 5DL8A 2KZ7A 2WVPA 2LFUA 3KZIO 3PRNA 4PR7A 2KXPA 2W81C 3AA6A 3G7GA 1ZHYA 2LHFA 3AA0A 4IL6O 4AYDC 4FZLA 4E1TA 2WJQA 3BRZA 4O4UA 4LSHA 2J4UP 3SYBA 5FVNA 5DL5A 4LSIA 4FRTA 4UB6O 4AKRA 4BUMX 3PORA 2IWWA 3V8UA 3O0EA 5EE2A 3T20A 1BH3A 4QQ1A 1QJ8A 4O3YA
chains in the Genus database with same CATH topology
3PGRA 3PGUA 1T1LA 2R8AA 3BRYA 3DWOX 3DWNA 3PF1A 3BS0A 2R4PA 3PGSA 1T16A 2R4LA 2R88A 2R89A 2R4NA 3BRZA 2R4OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PGR A;  3PGU A;  1T1L A;  2R8A A;  3BRY A;  3DWO X;  3DWN A;  3PF1 A;  3BS0 A;  2R4P A;  3PGS A;  1T16 A;  2R4L A;  2R88 A;  2R89 A;  2R4N A;  3BRZ A;  2R4O A; 
#chains in the Genus database with same CATH topology
 4FT6 A;  3SZD A;  2Y0L A;  2O4V A;  2R8A A;  3HOE A;  4N74 A;  3HW9 A;  5G3A A;  4FMS A;  4U9C A;  5ADX L;  2Y0K A;  3AAE A;  1QJ9 A;  3AA1 A;  1ORM A;  4AZL A;  3A0B O;  3SY9 A;  5IYU A;  2ERV A;  2OMF A;  2XE3 A;  4RLB A;  1HXT A;  2M06 A;  1P4T A;  2QTK A;  1MM4 A;  4O3X B;  4AFK A;  4AUI A;  5B66 O;  2XG6 A;  5GV0 A;  3UPG A;  3A2S X;  5H2F O;  5G39 A;  5G26 A;  2MHL A;  4GCQ A;  4KR4 A;  4LSF A;  2N2L A;  5E79 O;  4K3C A;  5D5D A;  2M07 A;  3SZV A;  4AYN A;  3T24 A;  2JMM A;  4N58 A;  3KVD D;  3AA7 A;  3VE1 A;  4D65 A;  1GFP A;  2XE2 A;  2Y7S A;  2XMX A;  3EMN X;  3JTY A;  1PRN A;  5T5F A;  2XE5 A;  4C00 A;  4D5U A;  4N59 A;  2Y2X A;  5AFU L;  1E54 A;  2F1C X;  1YS5 A;  5KAI O;  3RBH A;  2XTQ A;  2KC0 A;  4JFB A;  4AYE C;  2R4N A;  3AAA B;  4O49 A;  4RLC A;  2AXT O;  1GFO A;  4RL9 A;  5KAF O;  4Z3T A;  3QRC A;  3WU2 O;  1S5L O;  2K0L A;  2KDY A;  3PF1 A;  3WI5 A;  3C5O A;  2F1V A;  3HOL A;  3PGS A;  4C4V B;  2WJR A;  4KRA A;  3K19 A;  2IWV A;  4UB8 O;  5DL7 A;  1OSM A;  4F4B A;  1ZHX A;  1HXX A;  2GE4 A;  5TIS O;  2X9K A;  3LK2 B;  5PRN A;  4JCH A;  1MPF A;  4RJX A;  3LK3 A;  4AKR B;  4K3B A;  3POX A;  5ADX K;  1HXU A;  1ZHT A;  4PUX A;  4XNK A;  1GFQ A;  4O3W A;  3PQS A;  3TZG A;  3PGU A;  1BXW A;  4B61 A;  1H6S 1;  1THQ A;  4CTD A;  1ZHZ A;  4FSP A;  4FES A;  3AA1 B;  5GTH O;  3DZM A;  3BS0 A;  2N2M A;  4GCP A;  4O4X A;  4FQE A;  4G75 A;  4FZM A;  3VY8 X;  1IZN B;  2ZLD A;  3VE2 A;  8PRN A;  3NSG A;  5DL6 A;  1GFN A;  3A0H O;  3LK4 2;  3HWB A;  2R89 A;  3PQU A;  1BT9 A;  3AAA A;  5AFU K;  2KZ7 B;  3GP6 A;  3NJT A;  2ZFG A;  4FSO A;  3LK4 1;  4GCS A;  2KXP B;  3AA6 B;  3VY9 X;  1Q9G A;  3AA0 B;  5JDP A;  3AA7 B;  4XNL A;  1PHO A;  2R88 A;  4AYM C;  2JQY A;  4C69 X;  2YNK A;  4C4V A;  3QRA A;  4RJW A;  4FRX A;  3FYX A;  4AYI D;  3VZT X;  2W80 C;  3BRY A;  1QJP A;  3POU A;  4G76 A;  2Y0H A;  3T0S A;  2FGR A;  3DA3 A;  2X27 X;  1MM5 A;  3LK2 A;  2PRN A;  2XTR A;  4FOZ A;  2F1T A;  2K4T A;  3VZU X;  3POQ A;  2POR A;  4GF4 A;  3AAE B;  3WI4 A;  2R4P A;  2ODJ A;  2XE1 A;  2R4O A;  1OPF A;  3UU2 A;  4O3Z A;  1T1L A;  4LSE A;  3VZW X;  4AKM A;  1G90 A;  4GHB A;  4PJ0 O;  3DWN A;  4KR8 A;  1GFM A;  2FGQ X;  2MNH A;  4FZN A;  4N75 A;  1T16 A;  3SY7 A;  3UAQ A;  2R4L A;  5B5E O;  7PRN A;  1Q9F A;  3LK3 B;  3SYS A;  4E1S A;  4FUV A;  3JCU O;  1IZN A;  6PRN A;  1ZHW A;  3DWO X;  2YPV A;  2J1N A;  5GTI O;  4D64 A;  5G38 A;  3DA4 A;  3PGR A;  5DL8 A;  2KZ7 A;  2WVP A;  2LFU A;  3KZI O;  3PRN A;  4PR7 A;  2KXP A;  2W81 C;  3AA6 A;  3G7G A;  1ZHY A;  2LHF A;  3AA0 A;  4IL6 O;  4AYD C;  4FZL A;  4E1T A;  2WJQ A;  3BRZ A;  4O4U A;  4LSH A;  2J4U P;  3SYB A;  5FVN A;  5DL5 A;  4LSI A;  4FRT A;  4UB6 O;  4AKR A;  4BUM X;  3POR A;  2IWW A;  3V8U A;  3O0E A;  5EE2 A;  3T20 A;  1BH3 A;  4QQ1 A;  1QJ8 A;  4O3Y A; 
#chains in the Genus database with same CATH homology
 3PGR A;  3PGU A;  1T1L A;  2R8A A;  3BRY A;  3DWO X;  3DWN A;  3PF1 A;  3BS0 A;  2R4P A;  3PGS A;  1T16 A;  2R4L A;  2R88 A;  2R89 A;  2R4N A;  3BRZ A;  2R4O A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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