3BYJA

Crystal structure of b. subtilis levansucrase mutant d86a
Total Genus 138
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
138
sequence length
440
structure length
440
Chain Sequence
QKPYKETYGISHITRHDMLQIPEQQKNEKYQVPEFDSSTIKNISSAKGLDVWASWPLQNADGTVANYHGYHIVFALAGDPKNADDTSIYMFYQKVGETSIDSWKNAGRVFKDSDKFDANDSILKDQTQEWSGSATFTSDGKIRLFYTDFSGKHYGKQTLTTAQVNVSASDSSLNINGVEDYKSIFDGDGKTYQNVQQFIDEGNYSSGDNHTLRDPHYVEDKGHKYLVFEANTGTEDGYQGEESLFNKAYYGKSTSFFRQESQKLLQSDKKRTAELANGALGMIELNDDYTLKKVMKPLIASNTVTDEIERANVFKMNGKWYLFTDSRGSKMTIDGITSNDIYMLGYVSNSLTGPYKPLNKTGLVLKMDLDPNDVTFTYSHFAVPQAKGNNVVITSYMTNRGFYADKQSTFAPSFLLNIKGKKTSVVKDSILEQGQLTVNK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords Levansucrase
publication title Donor substrate recognition in the raffinose-bound E342A mutant of fructosyltransferase Bacillus subtilis levansucrase
rcsb
source organism Bacillus subtilis
total genus 138
structure length 440
sequence length 440
ec nomenclature ec 2.4.1.10: Levansucrase.
pdb deposition date 2008-01-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02435 Glyco_hydro_68 Levansucrase/Invertase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.115.10.20 Mainly Beta 5 Propeller Tachylectin-2; Chain A Glycosyl hydrolase domain; family 43 3byjA01
1VKDA 5JOYA 4FFHA 3KF5A 1Y9MA 2QQVA 3R4ZA 5FK7A 2X8SA 2QQWA 2EXJA 3WASA 3C2UA 2XQRA 3OM4A 3U75A 1WL7A 3VSSA 4NOVA 3ZXJA 5GLPA 4EQVA 3NQHA 5GLQA 4UDIA 3VSFA 3RWKX 1Y7BA 3D5ZA 3PIJA 3LV4A 4AK6A 4MLGA 2B4WA 3WPZA 4U6BA 3AKGA 4KC7A 3WATA 1UYPA 2VDTA 2X8FA 3QEDA 4N2RA 4UDKA 5GLLA 5C0PA 3TAWA 3WAUA 2EXKA 4KCAA 4PVAA 3P2NA 3WMZA 1ST8A 2ADDA 4N4BA 4QQSA 3U14A 3K1UA 2YFSA 5FKBA 3QEFA 3UGGA 1W2TA 2YFTA 2OXBA 5GLRA 1UV4A 5AY9A 3ZXKA 4KMIA 2YFRA 2QQUA 3WN2A 3QZ4A 3VT1A 4PVIA 3SC7X 3WPVA 5JOWA 4UDGA 3VT2A 5FMDA 3PIGA 5FMBA 3UGHA 3R4YA 3WN1A 5JOXA 3VSRA 3BYKA 1PT2A 5JOZA 3BYLA 1GYDB 4O8NA 3D61A 3KSTA 4O8PA 3WPUA 4U6DA 3LDRA 3AKFA 1YRZA 3C7OA 5A8DA 4N2ZA 3OM7A 3C7HA 5AYEA 2EXHA 5GLMA 5AYDA 3BYNA 3LEMA 4ONZA 2X8TA 2EXIA 3R67A 5B6TA 2AEYA 3OM2A 3OM6A 5A8CA 3LIHA 5GLNA 3AKIA 4AK7A 5FK8A 3VSZA 3LF7A 5FMCA 3LFIA 1YIFA 3AKHA 4UDJA 4UDKE 5A7VA 3BYJA 5FIXA 5FKCA 3WN0A 4FFIA 4KC8A 4KCBA 5GLKA 5A7VB 3WMYA 1W18A 2AC1A 3QEEA 3VT0A 4O8OA 1Y4WA 3CU9A 3D60A 5GLOA 4N1IA 3KF3A 3QC2A 1GYEB 3WPYA 3C7GA 4FFGA 3OM5A 5FLWA 3LIGA 3D5YA 1OYGA 1Y9GA 3C7EA 4D47A 3C7FA 5B6SA 4AK5A 3UGFA 2AEZA 1YI7A 3LDKA 5ANNA 3ZXLA 4COTA 2ADEA 1GYHA 4FFFA 5AYCA
chains in the Genus database with same CATH superfamily
1VKDA 5JOYA 4FFHA 3KF5A 1Y9MA 2QQVA 3R4ZA 5FK7A 2X8SA 2QQWA 2EXJA 3WASA 3C2UA 2XQRA 3OM4A 3U75A 1WL7A 3VSSA 4NOVA 3ZXJA 5GLPA 4EQVA 3NQHA 5GLQA 4UDIA 3VSFA 3RWKX 1Y7BA 3D5ZA 3PIJA 3LV4A 4AK6A 4MLGA 2B4WA 3WPZA 4U6BA 3AKGA 4KC7A 3WATA 1UYPA 2VDTA 2X8FA 3QEDA 4N2RA 4UDKA 5GLLA 5C0PA 3TAWA 3WAUA 2EXKA 4KCAA 5C2MA 4PVAA 3P2NA 3WMZA 1ST8A 2ADDA 4N4BA 4QQSA 3U14A 3K1UA 2YFSA 5FKBA 3QEFA 3UGGA 1W2TA 2YFTA 2OXBA 5GLRA 1UV4A 5AY9A 3ZXKA 4KMIA 2YFRA 2QQUA 3WN2A 3QZ4A 3VT1A 4PVIA 3SC7X 3WPVA 5JOWA 4UDGA 3VT2A 5FMDA 3PIGA 5FMBA 3UGHA 3R4YA 3WN1A 5JOXA 3VSRA 3BYKA 1PT2A 5JOZA 3BYLA 1GYDB 4O8NA 3D61A 3KSTA 4O8PA 3WPUA 4U6DA 3LDRA 3AKFA 1YRZA 3C7OA 5A8DA 4N2ZA 3OM7A 3C7HA 5AYEA 2EXHA 5GLMA 5AYDA 3BYNA 3LEMA 4ONZA 2X8TA 2EXIA 3R67A 5B6TA 2AEYA 3OM2A 3OM6A 5A8CA 3LIHA 5GLNA 3AKIA 4AK7A 5FK8A 3VSZA 3LF7A 5FMCA 3LFIA 1YIFA 3AKHA 1TL2A 4UDJA 4UDKE 5A7VA 3BYJA 5FIXA 5FKCA 3WN0A 4FFIA 4KC8A 4KCBA 5GLKA 5A7VB 3WMYA 1W18A 2AC1A 3QEEA 3VT0A 4O8OA 1Y4WA 3CU9A 3D60A 5GLOA 4N1IA 3KF3A 3QC2A 1GYEB 3WPYA 3C7GA 4FFGA 3OM5A 5FLWA 3LIGA 3D5YA 1OYGA 1Y9GA 3C7EA 4D47A 3C7FA 5B6SA 4AK5A 3UGFA 2AEZA 1YI7A 3LDKA 5ANNA 3ZXLA 4COTA 2ADEA 1GYHA 4FFFA 5AYCA
chains in the Genus database with same CATH topology
1VKDA 5JOYA 4FFHA 3KF5A 1Y9MA 2QQVA 3R4ZA 5FK7A 2X8SA 2QQWA 2EXJA 3WASA 3C2UA 2XQRA 3OM4A 3U75A 1WL7A 3VSSA 4NOVA 3ZXJA 5GLPA 4EQVA 3NQHA 5GLQA 4UDIA 3VSFA 3RWKX 1Y7BA 3D5ZA 3PIJA 3LV4A 4AK6A 4MLGA 2B4WA 3WPZA 4U6BA 3AKGA 4KC7A 3WATA 1UYPA 2VDTA 2X8FA 3QEDA 4N2RA 4UDKA 5GLLA 5C0PA 3TAWA 3WAUA 2EXKA 4KCAA 4PVAA 3P2NA 3WMZA 1ST8A 2ADDA 4N4BA 4QQSA 3U14A 3K1UA 2YFSA 5FKBA 3QEFA 3UGGA 1W2TA 2YFTA 2OXBA 5GLRA 1UV4A 5AY9A 3ZXKA 4KMIA 2YFRA 2QQUA 3WN2A 3QZ4A 3VT1A 4PVIA 3SC7X 3WPVA 5JOWA 4UDGA 3VT2A 5FMDA 3PIGA 5FMBA 3UGHA 3R4YA 3WN1A 5JOXA 3VSRA 3BYKA 1PT2A 5JOZA 3BYLA 1GYDB 4O8NA 3D61A 3KSTA 4O8PA 3WPUA 4U6DA 3LDRA 3AKFA 1YRZA 3C7OA 5A8DA 4N2ZA 3OM7A 3C7HA 5AYEA 2EXHA 5GLMA 5AYDA 3BYNA 3LEMA 4ONZA 2X8TA 2EXIA 3R67A 5B6TA 2AEYA 3OM2A 3OM6A 5A8CA 3LIHA 5GLNA 3AKIA 4AK7A 5FK8A 3VSZA 3LF7A 5FMCA 3LFIA 1YIFA 3AKHA 4UDJA 4UDKE 5A7VA 3BYJA 5FIXA 5FKCA 3WN0A 4FFIA 4KC8A 4KCBA 5GLKA 5A7VB 3WMYA 1W18A 2AC1A 3QEEA 3VT0A 4O8OA 1Y4WA 3CU9A 3D60A 5GLOA 4N1IA 3KF3A 3QC2A 1GYEB 3WPYA 3C7GA 4FFGA 3OM5A 5FLWA 3LIGA 3D5YA 1OYGA 1Y9GA 3C7EA 4D47A 3C7FA 5B6SA 4AK5A 3UGFA 2AEZA 1YI7A 3LDKA 5ANNA 3ZXLA 4COTA 2ADEA 1GYHA 4FFFA 5AYCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VKD A;  5JOY A;  4FFH A;  3KF5 A;  1Y9M A;  2QQV A;  3R4Z A;  5FK7 A;  2X8S A;  2QQW A;  2EXJ A;  3WAS A;  3C2U A;  2XQR A;  3OM4 A;  3U75 A;  1WL7 A;  3VSS A;  4NOV A;  3ZXJ A;  5GLP A;  4EQV A;  3NQH A;  5GLQ A;  4UDI A;  3VSF A;  3RWK X;  1Y7B A;  3D5Z A;  3PIJ A;  3LV4 A;  4AK6 A;  4MLG A;  2B4W A;  3WPZ A;  4U6B A;  3AKG A;  4KC7 A;  3WAT A;  1UYP A;  2VDT A;  2X8F A;  3QED A;  4N2R A;  4UDK A;  5GLL A;  5C0P A;  3TAW A;  3WAU A;  2EXK A;  4KCA A;  4PVA A;  3P2N A;  3WMZ A;  1ST8 A;  2ADD A;  4N4B A;  4QQS A;  3U14 A;  3K1U A;  2YFS A;  5FKB A;  3QEF A;  3UGG A;  1W2T A;  2YFT A;  2OXB A;  5GLR A;  1UV4 A;  5AY9 A;  3ZXK A;  4KMI A;  2YFR A;  2QQU A;  3WN2 A;  3QZ4 A;  3VT1 A;  4PVI A;  3SC7 X;  3WPV A;  5JOW A;  4UDG A;  3VT2 A;  5FMD A;  3PIG A;  5FMB A;  3UGH A;  3R4Y A;  3WN1 A;  5JOX A;  3VSR A;  3BYK A;  1PT2 A;  5JOZ A;  3BYL A;  1GYD B;  4O8N A;  3D61 A;  3KST A;  4O8P A;  3WPU A;  4U6D A;  3LDR A;  3AKF A;  1YRZ A;  3C7O A;  5A8D A;  4N2Z A;  3OM7 A;  3C7H A;  5AYE A;  2EXH A;  5GLM A;  5AYD A;  3BYN A;  3LEM A;  4ONZ A;  2X8T A;  2EXI A;  3R67 A;  5B6T A;  2AEY A;  3OM2 A;  3OM6 A;  5A8C A;  3LIH A;  5GLN A;  3AKI A;  4AK7 A;  5FK8 A;  3VSZ A;  3LF7 A;  5FMC A;  3LFI A;  1YIF A;  3AKH A;  4UDJ A;  4UDK E;  5A7V A;  3BYJ A;  5FIX A;  5FKC A;  3WN0 A;  4FFI A;  4KC8 A;  4KCB A;  5GLK A;  5A7V B;  3WMY A;  1W18 A;  2AC1 A;  3QEE A;  3VT0 A;  4O8O A;  1Y4W A;  3CU9 A;  3D60 A;  5GLO A;  4N1I A;  3KF3 A;  3QC2 A;  1GYE B;  3WPY A;  3C7G A;  4FFG A;  3OM5 A;  5FLW A;  3LIG A;  3D5Y A;  1OYG A;  1Y9G A;  3C7E A;  4D47 A;  3C7F A;  5B6S A;  4AK5 A;  3UGF A;  2AEZ A;  1YI7 A;  3LDK A;  5ANN A;  3ZXL A;  4COT A;  2ADE A;  1GYH A;  4FFF A;  5AYC A; 
#chains in the Genus database with same CATH topology
 1VKD A;  5JOY A;  4FFH A;  3KF5 A;  1Y9M A;  2QQV A;  3R4Z A;  5FK7 A;  2X8S A;  2QQW A;  2EXJ A;  3WAS A;  3C2U A;  2XQR A;  3OM4 A;  3U75 A;  1WL7 A;  3VSS A;  4NOV A;  3ZXJ A;  5GLP A;  4EQV A;  3NQH A;  5GLQ A;  4UDI A;  3VSF A;  3RWK X;  1Y7B A;  3D5Z A;  3PIJ A;  3LV4 A;  4AK6 A;  4MLG A;  2B4W A;  3WPZ A;  4U6B A;  3AKG A;  4KC7 A;  3WAT A;  1UYP A;  2VDT A;  2X8F A;  3QED A;  4N2R A;  4UDK A;  5GLL A;  5C0P A;  3TAW A;  3WAU A;  2EXK A;  4KCA A;  5C2M A;  4PVA A;  3P2N A;  3WMZ A;  1ST8 A;  2ADD A;  4N4B A;  4QQS A;  3U14 A;  3K1U A;  2YFS A;  5FKB A;  3QEF A;  3UGG A;  1W2T A;  2YFT A;  2OXB A;  5GLR A;  1UV4 A;  5AY9 A;  3ZXK A;  4KMI A;  2YFR A;  2QQU A;  3WN2 A;  3QZ4 A;  3VT1 A;  4PVI A;  3SC7 X;  3WPV A;  5JOW A;  4UDG A;  3VT2 A;  5FMD A;  3PIG A;  5FMB A;  3UGH A;  3R4Y A;  3WN1 A;  5JOX A;  3VSR A;  3BYK A;  1PT2 A;  5JOZ A;  3BYL A;  1GYD B;  4O8N A;  3D61 A;  3KST A;  4O8P A;  3WPU A;  4U6D A;  3LDR A;  3AKF A;  1YRZ A;  3C7O A;  5A8D A;  4N2Z A;  3OM7 A;  3C7H A;  5AYE A;  2EXH A;  5GLM A;  5AYD A;  3BYN A;  3LEM A;  4ONZ A;  2X8T A;  2EXI A;  3R67 A;  5B6T A;  2AEY A;  3OM2 A;  3OM6 A;  5A8C A;  3LIH A;  5GLN A;  3AKI A;  4AK7 A;  5FK8 A;  3VSZ A;  3LF7 A;  5FMC A;  3LFI A;  1YIF A;  3AKH A;  1TL2 A;  4UDJ A;  4UDK E;  5A7V A;  3BYJ A;  5FIX A;  5FKC A;  3WN0 A;  4FFI A;  4KC8 A;  4KCB A;  5GLK A;  5A7V B;  3WMY A;  1W18 A;  2AC1 A;  3QEE A;  3VT0 A;  4O8O A;  1Y4W A;  3CU9 A;  3D60 A;  5GLO A;  4N1I A;  3KF3 A;  3QC2 A;  1GYE B;  3WPY A;  3C7G A;  4FFG A;  3OM5 A;  5FLW A;  3LIG A;  3D5Y A;  1OYG A;  1Y9G A;  3C7E A;  4D47 A;  3C7F A;  5B6S A;  4AK5 A;  3UGF A;  2AEZ A;  1YI7 A;  3LDK A;  5ANN A;  3ZXL A;  4COT A;  2ADE A;  1GYH A;  4FFF A;  5AYC A; 
#chains in the Genus database with same CATH homology
 1VKD A;  5JOY A;  4FFH A;  3KF5 A;  1Y9M A;  2QQV A;  3R4Z A;  5FK7 A;  2X8S A;  2QQW A;  2EXJ A;  3WAS A;  3C2U A;  2XQR A;  3OM4 A;  3U75 A;  1WL7 A;  3VSS A;  4NOV A;  3ZXJ A;  5GLP A;  4EQV A;  3NQH A;  5GLQ A;  4UDI A;  3VSF A;  3RWK X;  1Y7B A;  3D5Z A;  3PIJ A;  3LV4 A;  4AK6 A;  4MLG A;  2B4W A;  3WPZ A;  4U6B A;  3AKG A;  4KC7 A;  3WAT A;  1UYP A;  2VDT A;  2X8F A;  3QED A;  4N2R A;  4UDK A;  5GLL A;  5C0P A;  3TAW A;  3WAU A;  2EXK A;  4KCA A;  4PVA A;  3P2N A;  3WMZ A;  1ST8 A;  2ADD A;  4N4B A;  4QQS A;  3U14 A;  3K1U A;  2YFS A;  5FKB A;  3QEF A;  3UGG A;  1W2T A;  2YFT A;  2OXB A;  5GLR A;  1UV4 A;  5AY9 A;  3ZXK A;  4KMI A;  2YFR A;  2QQU A;  3WN2 A;  3QZ4 A;  3VT1 A;  4PVI A;  3SC7 X;  3WPV A;  5JOW A;  4UDG A;  3VT2 A;  5FMD A;  3PIG A;  5FMB A;  3UGH A;  3R4Y A;  3WN1 A;  5JOX A;  3VSR A;  3BYK A;  1PT2 A;  5JOZ A;  3BYL A;  1GYD B;  4O8N A;  3D61 A;  3KST A;  4O8P A;  3WPU A;  4U6D A;  3LDR A;  3AKF A;  1YRZ A;  3C7O A;  5A8D A;  4N2Z A;  3OM7 A;  3C7H A;  5AYE A;  2EXH A;  5GLM A;  5AYD A;  3BYN A;  3LEM A;  4ONZ A;  2X8T A;  2EXI A;  3R67 A;  5B6T A;  2AEY A;  3OM2 A;  3OM6 A;  5A8C A;  3LIH A;  5GLN A;  3AKI A;  4AK7 A;  5FK8 A;  3VSZ A;  3LF7 A;  5FMC A;  3LFI A;  1YIF A;  3AKH A;  4UDJ A;  4UDK E;  5A7V A;  3BYJ A;  5FIX A;  5FKC A;  3WN0 A;  4FFI A;  4KC8 A;  4KCB A;  5GLK A;  5A7V B;  3WMY A;  1W18 A;  2AC1 A;  3QEE A;  3VT0 A;  4O8O A;  1Y4W A;  3CU9 A;  3D60 A;  5GLO A;  4N1I A;  3KF3 A;  3QC2 A;  1GYE B;  3WPY A;  3C7G A;  4FFG A;  3OM5 A;  5FLW A;  3LIG A;  3D5Y A;  1OYG A;  1Y9G A;  3C7E A;  4D47 A;  3C7F A;  5B6S A;  4AK5 A;  3UGF A;  2AEZ A;  1YI7 A;  3LDK A;  5ANN A;  3ZXL A;  4COT A;  2ADE A;  1GYH A;  4FFF A;  5AYC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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