3BZMA

Crystal structure of open form of menaquinone-specific isochorismate synthase, menf
Total Genus 143
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
143
sequence length
429
structure length
429
Chain Sequence
MQSLTTALENLLRHLSQEIPATPGIRVIDIPFPLKDAFDALSWLASQQTYPQFYWQQRNGDEEAVVLGAITRFTSLDQAQRFLRQHPEHADLRIWGLNAFDPSQGNLLLPRLEWRRCGGKATLRLTLFSESSLQHDAIQAKEFIATLVSIKPLPGLHLTTTREQHWPDKTGWTQLIELATKTIAEGELDKVVLARATDLHFASPVNAAAMMAASRRLNLNCYHFYMAFDGENAFLGSSPERLWRRRDKALRTEALAGTVANNPDDKQAQQLGEWLMADDKNQRENMLVVEDICQRLQADTQTLDVLPPQVLRLRKVQHLRRCIWTSLNKADDVICLHQLQPTAAVAGLPRDLARQFIARHEPFTREWYAGSAGYLSLQQSEFCVSLRSAKISGNVVRLYAGAGIVRGSDPEQEWQEIDNKAAGLRTLLQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of isochorismate synthase in complex with magnesium.
pubmed doi rcsb
molecule tags Isomerase
source organism Escherichia coli
molecule keywords Menaquinone-specific isochorismate synthase
total genus 143
structure length 429
sequence length 429
ec nomenclature ec 5.4.4.2: Isochorismate synthase.
pdb deposition date 2008-01-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00425 Chorismate_bind chorismate binding enzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.120.10 Alpha Beta 4-Layer Sandwich Anthranilate synthase Anthranilate synthase 3bzmA00
1I1QA 2I6YA 2FN0A 3HWOA 5JY4B 5JZDA 5JY8A 3ST6A 1K0GA 2FN1A 2G5FA 5KCKA 3R74A 5JXZA 3BZMA 2EUAA 3RV7A 5CWAA 3RV8A 3BZNA 1K0EA 3H9MA 1I7QA 3OS6A 1I7SA 4GRHA 3R75A 3VEHA 3RV9A 5JY9A 3GSEA 1QDLA 5JY4A 3LOGA 3RV6A 3R76A
chains in the Genus database with same CATH superfamily
1I1QA 2I6YA 2FN0A 3HWOA 5JY4B 5JZDA 5JY8A 3ST6A 1K0GA 2FN1A 2G5FA 5KCKA 3R74A 5JXZA 3BZMA 2EUAA 3RV7A 5CWAA 3RV8A 3BZNA 1K0EA 3H9MA 1I7QA 3OS6A 1I7SA 4GRHA 3R75A 3VEHA 3RV9A 5JY9A 3GSEA 1QDLA 5JY4A 3LOGA 3RV6A 3R76A
chains in the Genus database with same CATH topology
1I1QA 2I6YA 2FN0A 3HWOA 5JY4B 5JZDA 5JY8A 3ST6A 1K0GA 2FN1A 2G5FA 5KCKA 3R74A 5JXZA 3BZMA 2EUAA 3RV7A 5CWAA 3RV8A 3BZNA 1K0EA 3H9MA 1I7QA 3OS6A 1I7SA 4GRHA 3R75A 3VEHA 3RV9A 5JY9A 3GSEA 1QDLA 5JY4A 3LOGA 3RV6A 3R76A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1I1Q A;  2I6Y A;  2FN0 A;  3HWO A;  5JY4 B;  5JZD A;  5JY8 A;  3ST6 A;  1K0G A;  2FN1 A;  2G5F A;  5KCK A;  3R74 A;  5JXZ A;  3BZM A;  2EUA A;  3RV7 A;  5CWA A;  3RV8 A;  3BZN A;  1K0E A;  3H9M A;  1I7Q A;  3OS6 A;  1I7S A;  4GRH A;  3R75 A;  3VEH A;  3RV9 A;  5JY9 A;  3GSE A;  1QDL A;  5JY4 A;  3LOG A;  3RV6 A;  3R76 A; 
#chains in the Genus database with same CATH topology
 1I1Q A;  2I6Y A;  2FN0 A;  3HWO A;  5JY4 B;  5JZD A;  5JY8 A;  3ST6 A;  1K0G A;  2FN1 A;  2G5F A;  5KCK A;  3R74 A;  5JXZ A;  3BZM A;  2EUA A;  3RV7 A;  5CWA A;  3RV8 A;  3BZN A;  1K0E A;  3H9M A;  1I7Q A;  3OS6 A;  1I7S A;  4GRH A;  3R75 A;  3VEH A;  3RV9 A;  5JY9 A;  3GSE A;  1QDL A;  5JY4 A;  3LOG A;  3RV6 A;  3R76 A; 
#chains in the Genus database with same CATH homology
 1I1Q A;  2I6Y A;  2FN0 A;  3HWO A;  5JY4 B;  5JZD A;  5JY8 A;  3ST6 A;  1K0G A;  2FN1 A;  2G5F A;  5KCK A;  3R74 A;  5JXZ A;  3BZM A;  2EUA A;  3RV7 A;  5CWA A;  3RV8 A;  3BZN A;  1K0E A;  3H9M A;  1I7Q A;  3OS6 A;  1I7S A;  4GRH A;  3R75 A;  3VEH A;  3RV9 A;  5JY9 A;  3GSE A;  1QDL A;  5JY4 A;  3LOG A;  3RV6 A;  3R76 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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