3BZNA

Crystal structure of open form of menaquinone-specific isochorismate synthase, menf
Total Genus 143
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
143
sequence length
430
structure length
430
Chain Sequence
MQSLTTALENLLRHLSQEIPATPGIRVIDIPFPLKDAFDALSWLASQQTYPQFYWQQRNGDEEAVVLGAITRFTSLDQAQRFLRQHPEHADLRIWGLNAFDPSQGNLLLPRLEWRRCGGKATLRLTLFSESSLQHDAIQAKEFIATLVSIKPLPGLHLTTTREQHWPDKTGWTQLIELATKTIAEGELDKVVLARATDLHFASPVNAAAMMAASRRLNLNCYHFYMAFDGENAFLGSSPERLWRRRDKALRTEALAGTVANNPDDKQAQQLGEWLMADDKNQRENMLVVEDICQRLQADTQTLDVLPPQVLRLRKVQHLRRCIWTSLNKADDVICLHQLQPTAAVAGLPRDLARQFIARHEPFTREWYAGSAGYLSLQQSEFCVSLRSAKISGNVVRLYAGAGIVRGSDPEQEWQEIDNKAAGLRTLLQM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase
molecule keywords Menaquinone-specific isochorismate synthase
publication title Structure of isochorismate synthase in complex with magnesium.
pubmed doi rcsb
source organism Escherichia coli
total genus 143
structure length 430
sequence length 430
ec nomenclature ec 5.4.4.2: Isochorismate synthase.
pdb deposition date 2008-01-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00425 Chorismate_bind chorismate binding enzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.120.10 Alpha Beta 4-Layer Sandwich Anthranilate synthase Anthranilate synthase 3bznA00
5JY4A 1I7SA 1I1QA 4GRHA 5JZDA 2FN0A 5JY4B 3R75A 3BZMA 3R76A 3H9MA 3BZNA 3GSEA 2EUAA 3R74A 5JY9A 3RV9A 3HWOA 3RV6A 2FN1A 5JXZA 2I6YA 2G5FA 3RV8A 3VEHA 3ST6A 3LOGA 1K0GA 5KCKA 1I7QA 5JY8A 1K0EA 5CWAA 1QDLA 3RV7A 3OS6A
chains in the Genus database with same CATH superfamily
5JY4A 1I7SA 1I1QA 4GRHA 5JZDA 2FN0A 5JY4B 3R75A 3BZMA 3R76A 3H9MA 3BZNA 3GSEA 2EUAA 3R74A 5JY9A 3RV9A 3HWOA 3RV6A 2FN1A 5JXZA 2I6YA 2G5FA 3RV8A 3VEHA 3ST6A 3LOGA 1K0GA 5KCKA 1I7QA 5JY8A 1K0EA 5CWAA 1QDLA 3RV7A 3OS6A
chains in the Genus database with same CATH topology
5JY4A 1I7SA 1I1QA 4GRHA 5JZDA 2FN0A 5JY4B 3R75A 3BZMA 3R76A 3H9MA 3BZNA 3GSEA 2EUAA 3R74A 5JY9A 3RV9A 3HWOA 3RV6A 2FN1A 5JXZA 2I6YA 2G5FA 3RV8A 3VEHA 3ST6A 3LOGA 1K0GA 5KCKA 1I7QA 5JY8A 1K0EA 5CWAA 1QDLA 3RV7A 3OS6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5JY4 A;  1I7S A;  1I1Q A;  4GRH A;  5JZD A;  2FN0 A;  5JY4 B;  3R75 A;  3BZM A;  3R76 A;  3H9M A;  3BZN A;  3GSE A;  2EUA A;  3R74 A;  5JY9 A;  3RV9 A;  3HWO A;  3RV6 A;  2FN1 A;  5JXZ A;  2I6Y A;  2G5F A;  3RV8 A;  3VEH A;  3ST6 A;  3LOG A;  1K0G A;  5KCK A;  1I7Q A;  5JY8 A;  1K0E A;  5CWA A;  1QDL A;  3RV7 A;  3OS6 A; 
#chains in the Genus database with same CATH topology
 5JY4 A;  1I7S A;  1I1Q A;  4GRH A;  5JZD A;  2FN0 A;  5JY4 B;  3R75 A;  3BZM A;  3R76 A;  3H9M A;  3BZN A;  3GSE A;  2EUA A;  3R74 A;  5JY9 A;  3RV9 A;  3HWO A;  3RV6 A;  2FN1 A;  5JXZ A;  2I6Y A;  2G5F A;  3RV8 A;  3VEH A;  3ST6 A;  3LOG A;  1K0G A;  5KCK A;  1I7Q A;  5JY8 A;  1K0E A;  5CWA A;  1QDL A;  3RV7 A;  3OS6 A; 
#chains in the Genus database with same CATH homology
 5JY4 A;  1I7S A;  1I1Q A;  4GRH A;  5JZD A;  2FN0 A;  5JY4 B;  3R75 A;  3BZM A;  3R76 A;  3H9M A;  3BZN A;  3GSE A;  2EUA A;  3R74 A;  5JY9 A;  3RV9 A;  3HWO A;  3RV6 A;  2FN1 A;  5JXZ A;  2I6Y A;  2G5F A;  3RV8 A;  3VEH A;  3ST6 A;  3LOG A;  1K0G A;  5KCK A;  1I7Q A;  5JY8 A;  1K0E A;  5CWA A;  1QDL A;  3RV7 A;  3OS6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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