3C05A

Crystal structure of acostatin from agkistrodon contortrix contortrix
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
59
structure length
59
Chain Sequence
NPCCDAATCKLTPGSQCAEGLCCDQCKFIKAGKICRRARGDNPDYRCTGQSGDCPRKHF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Blood clotting/antitumor protein
molecule keywords Disintegrin acostatin alpha
publication title Crystal structure of acostatin, a dimeric disintegrin from southern copperhead (Agkistrodon contortrix contortrix) at 1.7 A resolution
pubmed doi rcsb
total genus 10
structure length 59
sequence length 59
chains with identical sequence C
ec nomenclature
pdb deposition date 2008-01-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.70.10 Few Secondary Structures Irregular Echistatin Disintegrin domain 3c05A00
2M7HA 3G5CA 2W9VA 1Q7JA 2MP51 1L3XA 4R5RA 2ECHA 1RO3A 3C05B 2W9UA 2M7FA 1J2LA 1Z1XA 3UCIA 2W9OA 3C05A 1RMRA 2PJFA 1MPZA 1TEJB 1FVLA 1N4YA 2M75A 2PJIA 2LJVA 2PJGA 2W9WA 1Q7IA 4M4CA 1TEJA 4R5UA 2MOP1 4RQGA
chains in the Genus database with same CATH superfamily
2M7HA 3G5CA 2W9VA 1Q7JA 2MP51 1L3XA 4R5RA 2ECHA 1RO3A 3C05B 2W9UA 2M7FA 1J2LA 1Z1XA 3UCIA 2W9OA 3C05A 1RMRA 2PJFA 1MPZA 1TEJB 1FVLA 1N4YA 2M75A 2PJIA 2LJVA 2PJGA 2W9WA 1Q7IA 4M4CA 1TEJA 4R5UA 2MOP1 4RQGA
chains in the Genus database with same CATH topology
2M7HA 3G5CA 2W9VA 1Q7JA 2MP51 1L3XA 4R5RA 2ECHA 1RO3A 3C05B 2W9UA 2M7FA 1J2LA 1Z1XA 3UCIA 2W9OA 3C05A 1RMRA 2PJFA 1MPZA 1TEJB 1FVLA 1N4YA 2M75A 2PJIA 2LJVA 2PJGA 2W9WA 1Q7IA 4M4CA 1TEJA 4R5UA 2MOP1 4RQGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2M7H A;  3G5C A;  2W9V A;  1Q7J A;  2MP5 1;  1L3X A;  4R5R A;  2ECH A;  1RO3 A;  3C05 B;  2W9U A;  2M7F A;  1J2L A;  1Z1X A;  3UCI A;  2W9O A;  3C05 A;  1RMR A;  2PJF A;  1MPZ A;  1TEJ B;  1FVL A;  1N4Y A;  2M75 A;  2PJI A;  2LJV A;  2PJG A;  2W9W A;  1Q7I A;  4M4C A;  1TEJ A;  4R5U A;  2MOP 1;  4RQG A; 
#chains in the Genus database with same CATH topology
 2M7H A;  3G5C A;  2W9V A;  1Q7J A;  2MP5 1;  1L3X A;  4R5R A;  2ECH A;  1RO3 A;  3C05 B;  2W9U A;  2M7F A;  1J2L A;  1Z1X A;  3UCI A;  2W9O A;  3C05 A;  1RMR A;  2PJF A;  1MPZ A;  1TEJ B;  1FVL A;  1N4Y A;  2M75 A;  2PJI A;  2LJV A;  2PJG A;  2W9W A;  1Q7I A;  4M4C A;  1TEJ A;  4R5U A;  2MOP 1;  4RQG A; 
#chains in the Genus database with same CATH homology
 2M7H A;  3G5C A;  2W9V A;  1Q7J A;  2MP5 1;  1L3X A;  4R5R A;  2ECH A;  1RO3 A;  3C05 B;  2W9U A;  2M7F A;  1J2L A;  1Z1X A;  3UCI A;  2W9O A;  3C05 A;  1RMR A;  2PJF A;  1MPZ A;  1TEJ B;  1FVL A;  1N4Y A;  2M75 A;  2PJI A;  2LJV A;  2PJG A;  2W9W A;  1Q7I A;  4M4C A;  1TEJ A;  4R5U A;  2MOP 1;  4RQG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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