3C05B

Crystal structure of acostatin from agkistrodon contortrix contortrix
Total Genus 9
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
59
structure length
59
Chain Sequence
ANPCCDAATCKLTTGSQCADGLCCDQCKFMKEGTVCRRARGDDLDDYCNGISAGCPRNP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Blood clotting/antitumor protein
molecule keywords Disintegrin acostatin alpha
publication title Crystal structure of acostatin, a dimeric disintegrin from southern copperhead (Agkistrodon contortrix contortrix) at 1.7 A resolution
pubmed doi rcsb
total genus 9
structure length 59
sequence length 59
chains with identical sequence D
ec nomenclature
pdb deposition date 2008-01-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.70.10 Few Secondary Structures Irregular Echistatin Disintegrin domain 3c05B00
2ECHA 1RMRA 4M4CA 1MPZA 1TEJB 3G5CA 2PJIA 2M7HA 2M75A 2W9OA 1RO3A 1TEJA 2W9VA 2LJVA 1Q7JA 2W9WA 1Z1XA 1Q7IA 3C05B 3C05A 2PJFA 3UCIA 1J2LA 2W9UA 2M7FA 1FVLA 1N4YA 4RQGA 4R5UA 4R5RA 2MOP1 2MP51 2PJGA 1L3XA
chains in the Genus database with same CATH superfamily
2ECHA 1RMRA 4M4CA 1MPZA 1TEJB 3G5CA 2PJIA 2M7HA 2M75A 2W9OA 1RO3A 1TEJA 2W9VA 2LJVA 1Q7JA 2W9WA 1Z1XA 1Q7IA 3C05B 3C05A 2PJFA 3UCIA 1J2LA 2W9UA 2M7FA 1FVLA 1N4YA 4RQGA 4R5UA 4R5RA 2MOP1 2MP51 2PJGA 1L3XA
chains in the Genus database with same CATH topology
2ECHA 1RMRA 4M4CA 1MPZA 1TEJB 3G5CA 2PJIA 2M7HA 2M75A 2W9OA 1RO3A 1TEJA 2W9VA 2LJVA 1Q7JA 2W9WA 1Z1XA 1Q7IA 3C05B 3C05A 2PJFA 3UCIA 1J2LA 2W9UA 2M7FA 1FVLA 1N4YA 4RQGA 4R5UA 4R5RA 2MOP1 2MP51 2PJGA 1L3XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ECH A;  1RMR A;  4M4C A;  1MPZ A;  1TEJ B;  3G5C A;  2PJI A;  2M7H A;  2M75 A;  2W9O A;  1RO3 A;  1TEJ A;  2W9V A;  2LJV A;  1Q7J A;  2W9W A;  1Z1X A;  1Q7I A;  3C05 B;  3C05 A;  2PJF A;  3UCI A;  1J2L A;  2W9U A;  2M7F A;  1FVL A;  1N4Y A;  4RQG A;  4R5U A;  4R5R A;  2MOP 1;  2MP5 1;  2PJG A;  1L3X A; 
#chains in the Genus database with same CATH topology
 2ECH A;  1RMR A;  4M4C A;  1MPZ A;  1TEJ B;  3G5C A;  2PJI A;  2M7H A;  2M75 A;  2W9O A;  1RO3 A;  1TEJ A;  2W9V A;  2LJV A;  1Q7J A;  2W9W A;  1Z1X A;  1Q7I A;  3C05 B;  3C05 A;  2PJF A;  3UCI A;  1J2L A;  2W9U A;  2M7F A;  1FVL A;  1N4Y A;  4RQG A;  4R5U A;  4R5R A;  2MOP 1;  2MP5 1;  2PJG A;  1L3X A; 
#chains in the Genus database with same CATH homology
 2ECH A;  1RMR A;  4M4C A;  1MPZ A;  1TEJ B;  3G5C A;  2PJI A;  2M7H A;  2M75 A;  2W9O A;  1RO3 A;  1TEJ A;  2W9V A;  2LJV A;  1Q7J A;  2W9W A;  1Z1X A;  1Q7I A;  3C05 B;  3C05 A;  2PJF A;  3UCI A;  1J2L A;  2W9U A;  2M7F A;  1FVL A;  1N4Y A;  4RQG A;  4R5U A;  4R5R A;  2MOP 1;  2MP5 1;  2PJG A;  1L3X A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...