3C0ZA

Crystal structure of catalytic domain of human histone deacetylase hdac7 in complex with saha
Total Genus 136
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
136
sequence length
386
structure length
383
Chain Sequence
TLPFTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNLNAIRSLEAVIRVHSKYWGCMQR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Histone deacetylase 7a
publication title Human HDAC7 harbors a class IIa histone deacetylase-specific zinc binding motif and cryptic deacetylase activity.
pubmed doi rcsb
source organism Homo sapiens
total genus 136
structure length 383
sequence length 386
chains with identical sequence B, C
ec nomenclature ec 3.5.1.98: Histone deacetylase.
pdb deposition date 2008-01-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00850 Hist_deacetyl Histone deacetylase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Histone deacetylase domain 3c0zA00
4ZUNA 5DC5A 4QA0A 1C3SA 5G12A 4QA3A 5FCWA 5THVA 3RQDA 3SFHA 1T67A 4BZ8A 4BKXB 5G1BA 5G1AA 4ZURA 4ZUMA 5LI3A 5BWZA 5DC6A 2VQWG 5EEMA 5A2SA 4BZ7A 3EZTA 3C10A 5DC8A 4LXZA 3F06A 4RN0A 5G11A 5G17A 2VQMA 4ZUOA 3MZ7A 5G0IA 2VCGA 3C0ZA 4RN2A 5EFJD 3F07A 5EF8A 3ZNRA 4BZ6A 4CBTA 5DC7A 5EEIA 5IX0A 3Q9FA 3MZ6A 3MZ4A 3ZNSA 4QA6A 2V5XA 4ZUQA 3EZPA 4RN1A 4QA1A 3MENA 5G10A 5ICNB 5D1BA 4LY1A 5EENA 3Q9CA 5G3WA 5JI5A 5EEFA 5G0YA 5G1CA 4BZ5A 5FUEA 3EWFA 1ZZ1A 4QA5A 5G0JA 5THSA 3Q9EA 3EW8A 4CQFA 3MZ3A 4QA7A 5EFBD 3F0RA 5EFNA 3C0YA 5EEKA 5D1CA 2V5WA 4QA2A 2VQQA 1ZZ0A 5EFHA 1T69A 1W22A 4QA4A 5EFGA 3Q9BA 5G13A 4A69A 2GH6A 1ZZ3A 3MAXA 2VQOA 5THTA 5THUA 4CBYA 5G0HA 1T64A 4ZUPA 2VQVA 3SFFA 1C3PA 4BZ9A 1VKGA 5EF7A 5IWGA 5EFKB 1C3RA 5G0GA 5D1DA 5G0XA 2VQJA
chains in the Genus database with same CATH superfamily
4ZUNA 5DC5A 1TBLA 4QA0A 1C3SA 2A0MA 4HZEA 5G12A 4QA3A 5FCWA 1GQ7A 4MYFA 3MFVA 5THVA 3RQDA 1HQHA 3LHLA 1WOIA 3NIPA 3SFHA 1T67A 4BZ8A 4BKXB 5G1BA 4Q40A 5G1AA 4Q42A 4ZURA 3E8QA 3GN0A 4ZUMA 5LI3A 4IU4A 1WOHA 4GWDA 5BWZA 4IE2A 5DC6A 4IU5A 4GSZA 2VQWG 5EEMA 3SJTA 4Q41A 2EF4A 5A2SA 4BZ7A 3EZTA 4Q3QA 3C10A 5DC8A 4LXZA 3F06A 1P8RA 4FCIA 4IXVA 3NIQA 4RN0A 1HQ5A 5G11A 1D3VA 5G17A 3GMZA 4Q3SA 2VQMA 1P8PA 4ZUOA 3MZ7A 5G0IA 3F80A 2VCGA 3C0ZA 4RHJA 4IU0A 4RN2A 5EFJD 4IE1A 3F07A 3SKKA 3NIOA 1HQXA 3THHA 2PLLA 4RHQA 1GQ6A 5EF8A 4GWCA 4RLAA 1T4RA 4Q3TA 4I06A 1CEVA 3ZNRA 5DC7A 4BZ6A 4CBTA 5EEIA 5HJAA 5IX0A 1R1OA 3Q9FA 1P8NA 3MZ6A 4MXRA 3MZ4A 2PHOA 3ZNSA 4QA6A 2V5XA 4ZUQA 3EZPA 4RN1A 4QA1A 3M1RA 3MENA 5G10A 1PQ3A 5D1BA 4HWWA 5ICNB 3E6KA 3LP7A 1T5FA 4LY1A 5EENA 1ZPEA 3Q9CA 1TA1A 5HJ9A 5G3WA 3KV2A 4IE3A 5JI5A 4Q3RC 5EEFA 4IXUA 5G0YA 4HXQA 5G1CA 3THJA 1T4SA 3THEA 4BZ5A 3DJ8A 1P8OA 1ZPGA 1ZZ1A 3EWFA 5FUEA 4QA5A 5G0JA 5THSA 3Q9EA 1T5GA 3EW8A 4CQFA 3MZ3A 4QA7A 5EFBD 3F0RA 5EFNA 3C0YA 3MMRA 5EEKA 4RHIA 3TH7A 4G3HA 5D1CA 1T4TA 1WVAA 1WVBA 2V5WA 2ZAVA 4QA2A 4RHLA 4RHMA 2VQQA 5CEVA 2EF5A 1ZZ0A 5EFHA 1T69A 3RLAA 3E8ZA 1W22A 1P8SA 1RLAA 4QA4A 4RHKA 3SL0A 1HQGA 3E9BA 5EFGA 1P8MA 3Q9BA 5G13A 1HQFA 4A69A 4CEVA 3MJLA 3SL1A 2GH6A 1ZZ3A 3MAXA 2VQOA 4Q3RA 4MYLA 4GSVA 5THTA 4FCKA 2AEBA 2PHAA 5THUA 4CBYA 1TBJA 4Q3PA 4DZ4A 1P8QA 5G0HA 1TBHA 3PZLA 1T64A 2EIVA 1T4PA 4MYNA 4ZUPA 4ITYA 4MYKA 1XFKA 2VQVA 2CEVA 3CEVA 3SFFA 1C3PA 5RLAA 4BZ9A 1VKGA 4IU1A 5EF7A 5EFKB 5IWGA 1C3RA 2RLAA 5G0GA 5D1DA 4GSMA 3LP4A 2VQJA 3MFWA 4Q3UA 5G0XA 3E6VA 3TF3A 4Q3VA 1WOGA
chains in the Genus database with same CATH topology
4ZUNA 5DC5A 4QA0A 1C3SA 5G12A 4QA3A 5FCWA 5THVA 3RQDA 3SFHA 1T67A 4BZ8A 4BKXB 5G1BA 5G1AA 4ZURA 4ZUMA 5LI3A 5BWZA 5DC6A 2VQWG 5EEMA 5A2SA 4BZ7A 3EZTA 3C10A 5DC8A 4LXZA 3F06A 4RN0A 5G11A 5G17A 2VQMA 4ZUOA 3MZ7A 5G0IA 2VCGA 3C0ZA 4RN2A 5EFJD 3F07A 5EF8A 3ZNRA 4BZ6A 4CBTA 5DC7A 5EEIA 5IX0A 3Q9FA 3MZ6A 3MZ4A 3ZNSA 4QA6A 2V5XA 4ZUQA 3EZPA 4RN1A 4QA1A 3MENA 5G10A 5ICNB 5D1BA 4LY1A 5EENA 3Q9CA 5G3WA 5JI5A 5EEFA 5G0YA 5G1CA 4BZ5A 5FUEA 3EWFA 1ZZ1A 4QA5A 5G0JA 5THSA 3Q9EA 3EW8A 4CQFA 3MZ3A 4QA7A 5EFBD 3F0RA 5EFNA 3C0YA 5EEKA 5D1CA 2V5WA 4QA2A 2VQQA 1ZZ0A 5EFHA 1T69A 1W22A 4QA4A 5EFGA 3Q9BA 5G13A 4A69A 2GH6A 1ZZ3A 3MAXA 2VQOA 5THTA 5THUA 4CBYA 5G0HA 1T64A 4ZUPA 2VQVA 3SFFA 1C3PA 4BZ9A 1VKGA 5EF7A 5IWGA 5EFKB 1C3RA 5G0GA 5D1DA 5G0XA 2VQJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZUN A;  5DC5 A;  4QA0 A;  1C3S A;  5G12 A;  4QA3 A;  5FCW A;  5THV A;  3RQD A;  3SFH A;  1T67 A;  4BZ8 A;  4BKX B;  5G1B A;  5G1A A;  4ZUR A;  4ZUM A;  5LI3 A;  5BWZ A;  5DC6 A;  2VQW G;  5EEM A;  5A2S A;  4BZ7 A;  3EZT A;  3C10 A;  5DC8 A;  4LXZ A;  3F06 A;  4RN0 A;  5G11 A;  5G17 A;  2VQM A;  4ZUO A;  3MZ7 A;  5G0I A;  2VCG A;  3C0Z A;  4RN2 A;  5EFJ D;  3F07 A;  5EF8 A;  3ZNR A;  4BZ6 A;  4CBT A;  5DC7 A;  5EEI A;  5IX0 A;  3Q9F A;  3MZ6 A;  3MZ4 A;  3ZNS A;  4QA6 A;  2V5X A;  4ZUQ A;  3EZP A;  4RN1 A;  4QA1 A;  3MEN A;  5G10 A;  5ICN B;  5D1B A;  4LY1 A;  5EEN A;  3Q9C A;  5G3W A;  5JI5 A;  5EEF A;  5G0Y A;  5G1C A;  4BZ5 A;  5FUE A;  3EWF A;  1ZZ1 A;  4QA5 A;  5G0J A;  5THS A;  3Q9E A;  3EW8 A;  4CQF A;  3MZ3 A;  4QA7 A;  5EFB D;  3F0R A;  5EFN A;  3C0Y A;  5EEK A;  5D1C A;  2V5W A;  4QA2 A;  2VQQ A;  1ZZ0 A;  5EFH A;  1T69 A;  1W22 A;  4QA4 A;  5EFG A;  3Q9B A;  5G13 A;  4A69 A;  2GH6 A;  1ZZ3 A;  3MAX A;  2VQO A;  5THT A;  5THU A;  4CBY A;  5G0H A;  1T64 A;  4ZUP A;  2VQV A;  3SFF A;  1C3P A;  4BZ9 A;  1VKG A;  5EF7 A;  5IWG A;  5EFK B;  1C3R A;  5G0G A;  5D1D A;  5G0X A;  2VQJ A; 
#chains in the Genus database with same CATH topology
 4ZUN A;  5DC5 A;  1TBL A;  4QA0 A;  1C3S A;  2A0M A;  4HZE A;  5G12 A;  4QA3 A;  5FCW A;  1GQ7 A;  4MYF A;  3MFV A;  5THV A;  3RQD A;  1HQH A;  3LHL A;  1WOI A;  3NIP A;  3SFH A;  1T67 A;  4BZ8 A;  4BKX B;  5G1B A;  4Q40 A;  5G1A A;  4Q42 A;  4ZUR A;  3E8Q A;  3GN0 A;  4ZUM A;  5LI3 A;  4IU4 A;  1WOH A;  4GWD A;  5BWZ A;  4IE2 A;  5DC6 A;  4IU5 A;  4GSZ A;  2VQW G;  5EEM A;  3SJT A;  4Q41 A;  2EF4 A;  5A2S A;  4BZ7 A;  3EZT A;  4Q3Q A;  3C10 A;  5DC8 A;  4LXZ A;  3F06 A;  1P8R A;  4FCI A;  4IXV A;  3NIQ A;  4RN0 A;  1HQ5 A;  5G11 A;  1D3V A;  5G17 A;  3GMZ A;  4Q3S A;  2VQM A;  1P8P A;  4ZUO A;  3MZ7 A;  5G0I A;  3F80 A;  2VCG A;  3C0Z A;  4RHJ A;  4IU0 A;  4RN2 A;  5EFJ D;  4IE1 A;  3F07 A;  3SKK A;  3NIO A;  1HQX A;  3THH A;  2PLL A;  4RHQ A;  1GQ6 A;  5EF8 A;  4GWC A;  4RLA A;  1T4R A;  4Q3T A;  4I06 A;  1CEV A;  3ZNR A;  5DC7 A;  4BZ6 A;  4CBT A;  5EEI A;  5HJA A;  5IX0 A;  1R1O A;  3Q9F A;  1P8N A;  3MZ6 A;  4MXR A;  3MZ4 A;  2PHO A;  3ZNS A;  4QA6 A;  2V5X A;  4ZUQ A;  3EZP A;  4RN1 A;  4QA1 A;  3M1R A;  3MEN A;  5G10 A;  1PQ3 A;  5D1B A;  4HWW A;  5ICN B;  3E6K A;  3LP7 A;  1T5F A;  4LY1 A;  5EEN A;  1ZPE A;  3Q9C A;  1TA1 A;  5HJ9 A;  5G3W A;  3KV2 A;  4IE3 A;  5JI5 A;  4Q3R C;  5EEF A;  4IXU A;  5G0Y A;  4HXQ A;  5G1C A;  3THJ A;  1T4S A;  3THE A;  4BZ5 A;  3DJ8 A;  1P8O A;  1ZPG A;  1ZZ1 A;  3EWF A;  5FUE A;  4QA5 A;  5G0J A;  5THS A;  3Q9E A;  1T5G A;  3EW8 A;  4CQF A;  3MZ3 A;  4QA7 A;  5EFB D;  3F0R A;  5EFN A;  3C0Y A;  3MMR A;  5EEK A;  4RHI A;  3TH7 A;  4G3H A;  5D1C A;  1T4T A;  1WVA A;  1WVB A;  2V5W A;  2ZAV A;  4QA2 A;  4RHL A;  4RHM A;  2VQQ A;  5CEV A;  2EF5 A;  1ZZ0 A;  5EFH A;  1T69 A;  3RLA A;  3E8Z A;  1W22 A;  1P8S A;  1RLA A;  4QA4 A;  4RHK A;  3SL0 A;  1HQG A;  3E9B A;  5EFG A;  1P8M A;  3Q9B A;  5G13 A;  1HQF A;  4A69 A;  4CEV A;  3MJL A;  3SL1 A;  2GH6 A;  1ZZ3 A;  3MAX A;  2VQO A;  4Q3R A;  4MYL A;  4GSV A;  5THT A;  4FCK A;  2AEB A;  2PHA A;  5THU A;  4CBY A;  1TBJ A;  4Q3P A;  4DZ4 A;  1P8Q A;  5G0H A;  1TBH A;  3PZL A;  1T64 A;  2EIV A;  1T4P A;  4MYN A;  4ZUP A;  4ITY A;  4MYK A;  1XFK A;  2VQV A;  2CEV A;  3CEV A;  3SFF A;  1C3P A;  5RLA A;  4BZ9 A;  1VKG A;  4IU1 A;  5EF7 A;  5EFK B;  5IWG A;  1C3R A;  2RLA A;  5G0G A;  5D1D A;  4GSM A;  3LP4 A;  2VQJ A;  3MFW A;  4Q3U A;  5G0X A;  3E6V A;  3TF3 A;  4Q3V A;  1WOG A; 
#chains in the Genus database with same CATH homology
 4ZUN A;  5DC5 A;  4QA0 A;  1C3S A;  5G12 A;  4QA3 A;  5FCW A;  5THV A;  3RQD A;  3SFH A;  1T67 A;  4BZ8 A;  4BKX B;  5G1B A;  5G1A A;  4ZUR A;  4ZUM A;  5LI3 A;  5BWZ A;  5DC6 A;  2VQW G;  5EEM A;  5A2S A;  4BZ7 A;  3EZT A;  3C10 A;  5DC8 A;  4LXZ A;  3F06 A;  4RN0 A;  5G11 A;  5G17 A;  2VQM A;  4ZUO A;  3MZ7 A;  5G0I A;  2VCG A;  3C0Z A;  4RN2 A;  5EFJ D;  3F07 A;  5EF8 A;  3ZNR A;  4BZ6 A;  4CBT A;  5DC7 A;  5EEI A;  5IX0 A;  3Q9F A;  3MZ6 A;  3MZ4 A;  3ZNS A;  4QA6 A;  2V5X A;  4ZUQ A;  3EZP A;  4RN1 A;  4QA1 A;  3MEN A;  5G10 A;  5ICN B;  5D1B A;  4LY1 A;  5EEN A;  3Q9C A;  5G3W A;  5JI5 A;  5EEF A;  5G0Y A;  5G1C A;  4BZ5 A;  5FUE A;  3EWF A;  1ZZ1 A;  4QA5 A;  5G0J A;  5THS A;  3Q9E A;  3EW8 A;  4CQF A;  3MZ3 A;  4QA7 A;  5EFB D;  3F0R A;  5EFN A;  3C0Y A;  5EEK A;  5D1C A;  2V5W A;  4QA2 A;  2VQQ A;  1ZZ0 A;  5EFH A;  1T69 A;  1W22 A;  4QA4 A;  5EFG A;  3Q9B A;  5G13 A;  4A69 A;  2GH6 A;  1ZZ3 A;  3MAX A;  2VQO A;  5THT A;  5THU A;  4CBY A;  5G0H A;  1T64 A;  4ZUP A;  2VQV A;  3SFF A;  1C3P A;  4BZ9 A;  1VKG A;  5EF7 A;  5IWG A;  5EFK B;  1C3R A;  5G0G A;  5D1D A;  5G0X A;  2VQJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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