3C59A

Crystal structure of the ligand-bound glucagon-like peptide-1 receptor extracellular domain
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
103
structure length
103
Chain Sequence
TVSLWETVQKWREYRRQCQRSLTEDPPPATDLFCNRTFDEYACWPDGEPGSFVNVSCPWYLPWASSVPQGHVYRFCTAEGLWLQKDNSSLPWRDLSECEESKR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein/signaling protein
molecule keywords Glucagon-like peptide 1 receptor
publication title Crystal Structure of the Ligand-bound Glucagon-like Peptide-1 Receptor Extracellular Domain
pubmed doi rcsb
source organism Homo sapiens
total genus 22
structure length 103
sequence length 103
ec nomenclature
pdb deposition date 2008-01-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02793 HRM Hormone receptor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.1240.10 Few Secondary Structures Irregular Hormone receptor fold GPCR, family 2, extracellular hormone receptor domain 3c59A00
3L2JA 3AQFB 2JNDA 3EHUA 1U34A 4ERSA 4HJ0A 3N7PA 2L27A 3H3GA 4DLQA 2JNCA 4DLOA 4LF3C 2XDGA 3EHTA 3IOLA 4ZGMA 3C59A 3C5TA 3EHSA 5II0A 2QKHA 3C4MA 3N7SA 3N7RA 2JODA
chains in the Genus database with same CATH superfamily
3L2JA 3AQFB 2JNDA 3EHUA 1U34A 4ERSA 4HJ0A 3N7PA 2L27A 3H3GA 4DLQA 2JNCA 4DLOA 4LF3C 2XDGA 3EHTA 3IOLA 4ZGMA 3C59A 3C5TA 3EHSA 5II0A 2QKHA 3C4MA 3N7SA 3N7RA 2JODA
chains in the Genus database with same CATH topology
3L2JA 3AQFB 2JNDA 3EHUA 1U34A 4ERSA 4HJ0A 3N7PA 2L27A 3H3GA 4DLQA 2JNCA 4DLOA 4LF3C 2XDGA 3EHTA 3IOLA 4ZGMA 3C59A 3C5TA 3EHSA 5II0A 2QKHA 3C4MA 3N7SA 3N7RA 2JODA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3L2J A;  3AQF B;  2JND A;  3EHU A;  1U34 A;  4ERS A;  4HJ0 A;  3N7P A;  2L27 A;  3H3G A;  4DLQ A;  2JNC A;  4DLO A;  4LF3 C;  2XDG A;  3EHT A;  3IOL A;  4ZGM A;  3C59 A;  3C5T A;  3EHS A;  5II0 A;  2QKH A;  3C4M A;  3N7S A;  3N7R A;  2JOD A; 
#chains in the Genus database with same CATH topology
 3L2J A;  3AQF B;  2JND A;  3EHU A;  1U34 A;  4ERS A;  4HJ0 A;  3N7P A;  2L27 A;  3H3G A;  4DLQ A;  2JNC A;  4DLO A;  4LF3 C;  2XDG A;  3EHT A;  3IOL A;  4ZGM A;  3C59 A;  3C5T A;  3EHS A;  5II0 A;  2QKH A;  3C4M A;  3N7S A;  3N7R A;  2JOD A; 
#chains in the Genus database with same CATH homology
 3L2J A;  3AQF B;  2JND A;  3EHU A;  1U34 A;  4ERS A;  4HJ0 A;  3N7P A;  2L27 A;  3H3G A;  4DLQ A;  2JNC A;  4DLO A;  4LF3 C;  2XDG A;  3EHT A;  3IOL A;  4ZGM A;  3C59 A;  3C5T A;  3EHS A;  5II0 A;  2QKH A;  3C4M A;  3N7S A;  3N7R A;  2JOD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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