3C6EC

Crystal structure of the precursor membrane protein- envelope protein heterodimer from the dengue 2 virus at neutral ph
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
81
structure length
81
Chain Sequence
FHLTTRNGEPHMIVSRQEKGKSLLFKTEDGVNMCTLMAMDLGELCEDTITYKCPLLRQNEPEDIDCWCNSTSTWVTYGTCT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
molecule keywords Envelope protein E
publication title The flavivirus precursor membrane-envelope protein complex: structure and maturation.
pubmed doi rcsb
source organism Dengue virus 2 thailand/16681/84
total genus 14
structure length 81
sequence length 81
ec nomenclature
pdb deposition date 2008-02-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF01570 Flavi_propep Flavivirus polyprotein propeptide
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.260.50 Mainly Beta Sandwich HSP40/DNAj peptide-binding domain HSP40/DNAj peptide-binding domain 3c6eC00
3C5XC 3C6EC
chains in the Genus database with same CATH superfamily
1NLTA 3LA0A 3TJ8A 3TJ9A 2JVMA 3AGXA 2JZ8A 3NXZA 1C3GA 3TJAA 3I38A 3AGZA 1GMVA 2Q2GA 2JRRA 3LZ8A 4L3KA 1GMUA 1XAOA 4J80A 1EB0A 3AKOB 3C5XC 2B26A 3NY0A 3C6EC 1EARA 1GMWA 3AGYA 2QLDA 1GMWD 2ODXA 3L9ZA
chains in the Genus database with same CATH topology
3AKOB 3C6EC 3C5XC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3C5X C;  3C6E C; 
#chains in the Genus database with same CATH topology
 1NLT A;  3LA0 A;  3TJ8 A;  3TJ9 A;  2JVM A;  3AGX A;  2JZ8 A;  3NXZ A;  1C3G A;  3TJA A;  3I38 A;  3AGZ A;  1GMV A;  2Q2G A;  2JRR A;  3LZ8 A;  4L3K A;  1GMU A;  1XAO A;  4J80 A;  1EB0 A;  3AKO B;  3C5X C;  2B26 A;  3NY0 A;  3C6E C;  1EAR A;  1GMW A;  3AGY A;  2QLD A;  1GMW D;  2ODX A;  3L9Z A; 
#chains in the Genus database with same CATH homology
 3AKO B;  3C6E C;  3C5X C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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