3C79A

Crystal structure of aplysia californica achbp in complex with the neonicotinoid imidacloprid
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
211
structure length
211
Chain Sequence
DKLHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Choline-binding protein
molecule keywords Soluble acetylcholine receptor
publication title Atomic interactions of neonicotinoid agonists with AChBP: molecular recognition of the distinctive electronegative pharmacophore.
pubmed doi rcsb
source organism Aplysia californica
total genus 51
structure length 211
sequence length 211
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2008-02-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 3c79A00
3UU4A 3UUBA 5BRXA 2BYPA 4HQPA 5BW2A 4TNWA 5J5HA 4ZR6A 5TVCA 3WTHA 3JAFA 4IREA 4UM3P 4NZBA 4ZK4A 3RQWA 3RQUA 4A98A 3TLTA 2BR8A 2BG9B 5FJVA 3LSVA 2ZJVA 2BG9A 3TLVA 2Y57A 4AFTA 2WNLA 4HFHA 4UXUA 3UQ4A 2BYSA 2W8GA 3GUAA 2W8FA 5HCMA 5SYOA 3SIOA 3UU6A 4HFDA 4QH4A 3UQ7A 2XQ8A 5HEJA 4AFGA 3SQ6A 3EAMA 3WTOA 5KE4A 5AFHA 4DBMA 4ZJSA 1I9BA 3SH1A 4ZK1A 3WTLA 4QH5A 2XYSA 5JMEA 4BFQA 5BP0A 4QAAA 5J5IA 4QABA 5J5FA 4TWHA 5HCJA 2BG9C 2X00D 3ZDHA 3ZDGA 2XQ7A 5AFMB 2BYQA 4ILCA 3UU3A 3WTIA 5AFMA 3WTNA 4HFIA 2XZ5A 3RIAA 2Y7YA 4UM1A 5J0ZA 4B5DA 4UM3S 3WTKA 2YMEA 2VL0A 5HEHA 2QC1B 4ZRUA 2Y56A 2XQAA 2XNTA 3U8MA 2XQ9A 2ZJUA 4Z90A 4ZZCA 5IUXA 1UX2A 2PGZA 1UV6A 3U8NA 4AFHA 2XNVA 2C9TA 5HEOA 3RHWA 3TLSA 5KZUA 2XQ3A 3RIFA 3WTJA 3C84A 3PMZA 4ZZBA 3EHZA 2XQ5A 2BG9E 2PH9A 4QH1A 3T4MA 4LMKA 3JADA 5AFLA 4COFA 5CFBA 5HEUA 2BR7A 2YKSA 1UW6A 4FRRA 5AFNA 4EZ1A 5LXBA 4TNVA 4ZJTA 2WNCA 2YMDA 2WZYA 3RI5A 2XNUA 5AFKA 4XK9A 3P4WA 5LG3A 2YN6A 4HFEA 4WV9A 4BQTA 2Y54A 2WNJA 5CO5A 5HEGA 4LMJA 2YOEA 3IGQA 3JAEA 3U8LA 2Y58A 3WTMA 4D01A 4ALXA 5J5GA 4A97A 3TLWA 4IL9A 3U8JA 2XQ6A 2BJ0A 4IL4A 4HFCA 4QACA 4TWFA 2UZ6A 3EI0A 5L4HA 2XQ4A 4XHEA 4ILAA 3ZKRA 3SQ9A 4UY2A 3C79A 4F8HA 5AFJA 5AINA 2XYTA 4Z91A 4PIRA 3WIPA 3P50A 3UU8A 3U8KA 3TLUA 2BYNA 5L47A 2WN9A 4NPPA 2X00A 4TWDA 4UM3A 5L4EA 4X5TA 3UU5A 2XZ6A 3PEOA 4HFBA 2BYRA 4LMLA 4ILBA
chains in the Genus database with same CATH superfamily
3UU4A 3UUBA 5BRXA 2BYPA 4HQPA 5BW2A 4TNWA 5J5HA 4ZR6A 5TVCA 3WTHA 3JAFA 4IREA 4UM3P 4NZBA 4ZK4A 3RQWA 3RQUA 4A98A 3TLTA 2BR8A 2BG9B 5FJVA 3LSVA 2ZJVA 2BG9A 3TLVA 2Y57A 4AFTA 2WNLA 4HFHA 4UXUA 3UQ4A 2BYSA 2W8GA 3GUAA 2W8FA 5HCMA 5SYOA 3SIOA 3UU6A 4HFDA 4QH4A 3UQ7A 2XQ8A 5HEJA 4AFGA 3SQ6A 3EAMA 3WTOA 5KE4A 5AFHA 4DBMA 4ZJSA 1I9BA 3SH1A 4ZK1A 3WTLA 4QH5A 2XYSA 5JMEA 4BFQA 5BP0A 4QAAA 5J5IA 4QABA 5J5FA 4TWHA 5HCJA 2BG9C 2X00D 3ZDHA 3ZDGA 2XQ7A 5AFMB 2BYQA 4ILCA 3UU3A 3WTIA 5AFMA 3WTNA 4HFIA 2XZ5A 3RIAA 2Y7YA 4UM1A 5J0ZA 4B5DA 4UM3S 3WTKA 2YMEA 2VL0A 5HEHA 2QC1B 4ZRUA 2Y56A 2XQAA 2XNTA 3U8MA 2XQ9A 2ZJUA 4Z90A 4ZZCA 5IUXA 1UX2A 2PGZA 1UV6A 3U8NA 4AFHA 2XNVA 2C9TA 5HEOA 3RHWA 3TLSA 5KZUA 2XQ3A 3RIFA 3WTJA 3C84A 3PMZA 4ZZBA 3EHZA 2XQ5A 2BG9E 2PH9A 4QH1A 3T4MA 4LMKA 3JADA 5AFLA 4COFA 5CFBA 5HEUA 2BR7A 2YKSA 1UW6A 4FRRA 5AFNA 4EZ1A 5LXBA 4TNVA 4ZJTA 2WNCA 2YMDA 2WZYA 3RI5A 2XNUA 5AFKA 4XK9A 3P4WA 5LG3A 2YN6A 4HFEA 4WV9A 4BQTA 2Y54A 2WNJA 5CO5A 5HEGA 4LMJA 2YOEA 3IGQA 3JAEA 3U8LA 2Y58A 3WTMA 4D01A 4ALXA 5J5GA 4A97A 3TLWA 4IL9A 3U8JA 2XQ6A 2BJ0A 4IL4A 4HFCA 4QACA 4TWFA 2UZ6A 3EI0A 5L4HA 2XQ4A 4XHEA 4ILAA 3ZKRA 3SQ9A 4UY2A 3C79A 4F8HA 5AFJA 5AINA 2XYTA 4Z91A 4PIRA 3WIPA 3P50A 3UU8A 3U8KA 3TLUA 2BYNA 5L47A 2WN9A 4NPPA 2X00A 4TWDA 4UM3A 5L4EA 4X5TA 3UU5A 2XZ6A 3PEOA 4HFBA 2BYRA 4LMLA 4ILBA
chains in the Genus database with same CATH topology
3UU4A 3UUBA 5BRXA 2BYPA 4HQPA 5BW2A 4TNWA 5J5HA 4ZR6A 5TVCA 3WTHA 3JAFA 4IREA 4UM3P 4NZBA 4ZK4A 3RQWA 3RQUA 4A98A 3TLTA 2BR8A 2BG9B 5FJVA 3LSVA 2ZJVA 2BG9A 3TLVA 2Y57A 4AFTA 2WNLA 4HFHA 4UXUA 3UQ4A 2BYSA 2W8GA 3GUAA 2W8FA 5HCMA 5SYOA 3SIOA 3UU6A 4HFDA 4QH4A 3UQ7A 2XQ8A 5HEJA 4AFGA 3SQ6A 3EAMA 3WTOA 5KE4A 5AFHA 4DBMA 4ZJSA 1I9BA 3SH1A 4ZK1A 3WTLA 4QH5A 2XYSA 5JMEA 4BFQA 5BP0A 4QAAA 5J5IA 4QABA 5J5FA 4TWHA 5HCJA 2BG9C 2X00D 3ZDHA 3ZDGA 2XQ7A 5AFMB 2BYQA 4ILCA 3UU3A 3WTIA 5AFMA 3WTNA 4HFIA 2XZ5A 3RIAA 2Y7YA 4UM1A 5J0ZA 4B5DA 4UM3S 3WTKA 2YMEA 2VL0A 5HEHA 2QC1B 4ZRUA 2Y56A 2XQAA 2XNTA 3U8MA 2XQ9A 2ZJUA 4Z90A 4ZZCA 5IUXA 1UX2A 2PGZA 1UV6A 3U8NA 4AFHA 2XNVA 2C9TA 5HEOA 3RHWA 3TLSA 5KZUA 2XQ3A 3RIFA 3WTJA 3C84A 3PMZA 4ZZBA 3EHZA 2XQ5A 2BG9E 2PH9A 4QH1A 3T4MA 4LMKA 3JADA 5AFLA 4COFA 5CFBA 5HEUA 2BR7A 2YKSA 1UW6A 4FRRA 5AFNA 4EZ1A 5LXBA 4TNVA 4ZJTA 2WNCA 2YMDA 2WZYA 3RI5A 2XNUA 5AFKA 4XK9A 3P4WA 5LG3A 2YN6A 4HFEA 4WV9A 4BQTA 2Y54A 2WNJA 5CO5A 5HEGA 4LMJA 2YOEA 3IGQA 3JAEA 3U8LA 2Y58A 3WTMA 4D01A 4ALXA 5J5GA 4A97A 3TLWA 4IL9A 3U8JA 2XQ6A 2BJ0A 4IL4A 4HFCA 4QACA 4TWFA 2UZ6A 3EI0A 5L4HA 2XQ4A 4XHEA 4ILAA 3ZKRA 3SQ9A 4UY2A 3C79A 4F8HA 5AFJA 5AINA 2XYTA 4Z91A 4PIRA 3WIPA 3P50A 3UU8A 3U8KA 3TLUA 2BYNA 5L47A 2WN9A 4NPPA 2X00A 4TWDA 4UM3A 5L4EA 4X5TA 3UU5A 2XZ6A 3PEOA 4HFBA 2BYRA 4LMLA 4ILBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3UU4 A;  3UUB A;  5BRX A;  2BYP A;  4HQP A;  5BW2 A;  4TNW A;  5J5H A;  4ZR6 A;  5TVC A;  3WTH A;  3JAF A;  4IRE A;  4UM3 P;  4NZB A;  4ZK4 A;  3RQW A;  3RQU A;  4A98 A;  3TLT A;  2BR8 A;  2BG9 B;  5FJV A;  3LSV A;  2ZJV A;  2BG9 A;  3TLV A;  2Y57 A;  4AFT A;  2WNL A;  4HFH A;  4UXU A;  3UQ4 A;  2BYS A;  2W8G A;  3GUA A;  2W8F A;  5HCM A;  5SYO A;  3SIO A;  3UU6 A;  4HFD A;  4QH4 A;  3UQ7 A;  2XQ8 A;  5HEJ A;  4AFG A;  3SQ6 A;  3EAM A;  3WTO A;  5KE4 A;  5AFH A;  4DBM A;  4ZJS A;  1I9B A;  3SH1 A;  4ZK1 A;  3WTL A;  4QH5 A;  2XYS A;  5JME A;  4BFQ A;  5BP0 A;  4QAA A;  5J5I A;  4QAB A;  5J5F A;  4TWH A;  5HCJ A;  2BG9 C;  2X00 D;  3ZDH A;  3ZDG A;  2XQ7 A;  5AFM B;  2BYQ A;  4ILC A;  3UU3 A;  3WTI A;  5AFM A;  3WTN A;  4HFI A;  2XZ5 A;  3RIA A;  2Y7Y A;  4UM1 A;  5J0Z A;  4B5D A;  4UM3 S;  3WTK A;  2YME A;  2VL0 A;  5HEH A;  2QC1 B;  4ZRU A;  2Y56 A;  2XQA A;  2XNT A;  3U8M A;  2XQ9 A;  2ZJU A;  4Z90 A;  4ZZC A;  5IUX A;  1UX2 A;  2PGZ A;  1UV6 A;  3U8N A;  4AFH A;  2XNV A;  2C9T A;  5HEO A;  3RHW A;  3TLS A;  5KZU A;  2XQ3 A;  3RIF A;  3WTJ A;  3C84 A;  3PMZ A;  4ZZB A;  3EHZ A;  2XQ5 A;  2BG9 E;  2PH9 A;  4QH1 A;  3T4M A;  4LMK A;  3JAD A;  5AFL A;  4COF A;  5CFB A;  5HEU A;  2BR7 A;  2YKS A;  1UW6 A;  4FRR A;  5AFN A;  4EZ1 A;  5LXB A;  4TNV A;  4ZJT A;  2WNC A;  2YMD A;  2WZY A;  3RI5 A;  2XNU A;  5AFK A;  4XK9 A;  3P4W A;  5LG3 A;  2YN6 A;  4HFE A;  4WV9 A;  4BQT A;  2Y54 A;  2WNJ A;  5CO5 A;  5HEG A;  4LMJ A;  2YOE A;  3IGQ A;  3JAE A;  3U8L A;  2Y58 A;  3WTM A;  4D01 A;  4ALX A;  5J5G A;  4A97 A;  3TLW A;  4IL9 A;  3U8J A;  2XQ6 A;  2BJ0 A;  4IL4 A;  4HFC A;  4QAC A;  4TWF A;  2UZ6 A;  3EI0 A;  5L4H A;  2XQ4 A;  4XHE A;  4ILA A;  3ZKR A;  3SQ9 A;  4UY2 A;  3C79 A;  4F8H A;  5AFJ A;  5AIN A;  2XYT A;  4Z91 A;  4PIR A;  3WIP A;  3P50 A;  3UU8 A;  3U8K A;  3TLU A;  2BYN A;  5L47 A;  2WN9 A;  4NPP A;  2X00 A;  4TWD A;  4UM3 A;  5L4E A;  4X5T A;  3UU5 A;  2XZ6 A;  3PEO A;  4HFB A;  2BYR A;  4LML A;  4ILB A; 
#chains in the Genus database with same CATH topology
 3UU4 A;  3UUB A;  5BRX A;  2BYP A;  4HQP A;  5BW2 A;  4TNW A;  5J5H A;  4ZR6 A;  5TVC A;  3WTH A;  3JAF A;  4IRE A;  4UM3 P;  4NZB A;  4ZK4 A;  3RQW A;  3RQU A;  4A98 A;  3TLT A;  2BR8 A;  2BG9 B;  5FJV A;  3LSV A;  2ZJV A;  2BG9 A;  3TLV A;  2Y57 A;  4AFT A;  2WNL A;  4HFH A;  4UXU A;  3UQ4 A;  2BYS A;  2W8G A;  3GUA A;  2W8F A;  5HCM A;  5SYO A;  3SIO A;  3UU6 A;  4HFD A;  4QH4 A;  3UQ7 A;  2XQ8 A;  5HEJ A;  4AFG A;  3SQ6 A;  3EAM A;  3WTO A;  5KE4 A;  5AFH A;  4DBM A;  4ZJS A;  1I9B A;  3SH1 A;  4ZK1 A;  3WTL A;  4QH5 A;  2XYS A;  5JME A;  4BFQ A;  5BP0 A;  4QAA A;  5J5I A;  4QAB A;  5J5F A;  4TWH A;  5HCJ A;  2BG9 C;  2X00 D;  3ZDH A;  3ZDG A;  2XQ7 A;  5AFM B;  2BYQ A;  4ILC A;  3UU3 A;  3WTI A;  5AFM A;  3WTN A;  4HFI A;  2XZ5 A;  3RIA A;  2Y7Y A;  4UM1 A;  5J0Z A;  4B5D A;  4UM3 S;  3WTK A;  2YME A;  2VL0 A;  5HEH A;  2QC1 B;  4ZRU A;  2Y56 A;  2XQA A;  2XNT A;  3U8M A;  2XQ9 A;  2ZJU A;  4Z90 A;  4ZZC A;  5IUX A;  1UX2 A;  2PGZ A;  1UV6 A;  3U8N A;  4AFH A;  2XNV A;  2C9T A;  5HEO A;  3RHW A;  3TLS A;  5KZU A;  2XQ3 A;  3RIF A;  3WTJ A;  3C84 A;  3PMZ A;  4ZZB A;  3EHZ A;  2XQ5 A;  2BG9 E;  2PH9 A;  4QH1 A;  3T4M A;  4LMK A;  3JAD A;  5AFL A;  4COF A;  5CFB A;  5HEU A;  2BR7 A;  2YKS A;  1UW6 A;  4FRR A;  5AFN A;  4EZ1 A;  5LXB A;  4TNV A;  4ZJT A;  2WNC A;  2YMD A;  2WZY A;  3RI5 A;  2XNU A;  5AFK A;  4XK9 A;  3P4W A;  5LG3 A;  2YN6 A;  4HFE A;  4WV9 A;  4BQT A;  2Y54 A;  2WNJ A;  5CO5 A;  5HEG A;  4LMJ A;  2YOE A;  3IGQ A;  3JAE A;  3U8L A;  2Y58 A;  3WTM A;  4D01 A;  4ALX A;  5J5G A;  4A97 A;  3TLW A;  4IL9 A;  3U8J A;  2XQ6 A;  2BJ0 A;  4IL4 A;  4HFC A;  4QAC A;  4TWF A;  2UZ6 A;  3EI0 A;  5L4H A;  2XQ4 A;  4XHE A;  4ILA A;  3ZKR A;  3SQ9 A;  4UY2 A;  3C79 A;  4F8H A;  5AFJ A;  5AIN A;  2XYT A;  4Z91 A;  4PIR A;  3WIP A;  3P50 A;  3UU8 A;  3U8K A;  3TLU A;  2BYN A;  5L47 A;  2WN9 A;  4NPP A;  2X00 A;  4TWD A;  4UM3 A;  5L4E A;  4X5T A;  3UU5 A;  2XZ6 A;  3PEO A;  4HFB A;  2BYR A;  4LML A;  4ILB A; 
#chains in the Genus database with same CATH homology
 3UU4 A;  3UUB A;  5BRX A;  2BYP A;  4HQP A;  5BW2 A;  4TNW A;  5J5H A;  4ZR6 A;  5TVC A;  3WTH A;  3JAF A;  4IRE A;  4UM3 P;  4NZB A;  4ZK4 A;  3RQW A;  3RQU A;  4A98 A;  3TLT A;  2BR8 A;  2BG9 B;  5FJV A;  3LSV A;  2ZJV A;  2BG9 A;  3TLV A;  2Y57 A;  4AFT A;  2WNL A;  4HFH A;  4UXU A;  3UQ4 A;  2BYS A;  2W8G A;  3GUA A;  2W8F A;  5HCM A;  5SYO A;  3SIO A;  3UU6 A;  4HFD A;  4QH4 A;  3UQ7 A;  2XQ8 A;  5HEJ A;  4AFG A;  3SQ6 A;  3EAM A;  3WTO A;  5KE4 A;  5AFH A;  4DBM A;  4ZJS A;  1I9B A;  3SH1 A;  4ZK1 A;  3WTL A;  4QH5 A;  2XYS A;  5JME A;  4BFQ A;  5BP0 A;  4QAA A;  5J5I A;  4QAB A;  5J5F A;  4TWH A;  5HCJ A;  2BG9 C;  2X00 D;  3ZDH A;  3ZDG A;  2XQ7 A;  5AFM B;  2BYQ A;  4ILC A;  3UU3 A;  3WTI A;  5AFM A;  3WTN A;  4HFI A;  2XZ5 A;  3RIA A;  2Y7Y A;  4UM1 A;  5J0Z A;  4B5D A;  4UM3 S;  3WTK A;  2YME A;  2VL0 A;  5HEH A;  2QC1 B;  4ZRU A;  2Y56 A;  2XQA A;  2XNT A;  3U8M A;  2XQ9 A;  2ZJU A;  4Z90 A;  4ZZC A;  5IUX A;  1UX2 A;  2PGZ A;  1UV6 A;  3U8N A;  4AFH A;  2XNV A;  2C9T A;  5HEO A;  3RHW A;  3TLS A;  5KZU A;  2XQ3 A;  3RIF A;  3WTJ A;  3C84 A;  3PMZ A;  4ZZB A;  3EHZ A;  2XQ5 A;  2BG9 E;  2PH9 A;  4QH1 A;  3T4M A;  4LMK A;  3JAD A;  5AFL A;  4COF A;  5CFB A;  5HEU A;  2BR7 A;  2YKS A;  1UW6 A;  4FRR A;  5AFN A;  4EZ1 A;  5LXB A;  4TNV A;  4ZJT A;  2WNC A;  2YMD A;  2WZY A;  3RI5 A;  2XNU A;  5AFK A;  4XK9 A;  3P4W A;  5LG3 A;  2YN6 A;  4HFE A;  4WV9 A;  4BQT A;  2Y54 A;  2WNJ A;  5CO5 A;  5HEG A;  4LMJ A;  2YOE A;  3IGQ A;  3JAE A;  3U8L A;  2Y58 A;  3WTM A;  4D01 A;  4ALX A;  5J5G A;  4A97 A;  3TLW A;  4IL9 A;  3U8J A;  2XQ6 A;  2BJ0 A;  4IL4 A;  4HFC A;  4QAC A;  4TWF A;  2UZ6 A;  3EI0 A;  5L4H A;  2XQ4 A;  4XHE A;  4ILA A;  3ZKR A;  3SQ9 A;  4UY2 A;  3C79 A;  4F8H A;  5AFJ A;  5AIN A;  2XYT A;  4Z91 A;  4PIR A;  3WIP A;  3P50 A;  3UU8 A;  3U8K A;  3TLU A;  2BYN A;  5L47 A;  2WN9 A;  4NPP A;  2X00 A;  4TWD A;  4UM3 A;  5L4E A;  4X5T A;  3UU5 A;  2XZ6 A;  3PEO A;  4HFB A;  2BYR A;  4LML A;  4ILB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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