3C7XA

Hemopexin-like domain of matrix metalloproteinase 14
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
196
structure length
196
Chain Sequence
PNICDGNFDTVAMLRGEMFVFKERWFWRVRNNQVMDGYPMPIGQFWRGLPASINTAYERKDGKFVFFKGDKHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRGNKYYRFNEELRAVDSEYPKNIKVWEGIPESPRGSFMGSDEVFTYFYKGNKYWKFNNQKLKVEPGYPKSALRDWMGCPSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title The dimer interface of the membrane type 1 matrix metalloproteinase hemopexin domain: crystal structure and biological functions
pubmed doi rcsb
molecule tags Hydrolase
source organism Homo sapiens
molecule keywords Matrix metalloproteinase-14
total genus 41
structure length 196
sequence length 196
ec nomenclature ec 3.4.24.80: Membrane-type matrix metalloproteinase-1.
pdb deposition date 2008-02-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00045 Hemopexin Hemopexin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.110.10.10 Mainly Beta 4 Propeller Hemopexin Hemopexin-like domain 3c7xA00
1RTGA 1CK7A 1QHUA 3LP9A 3S18A 4FU4A 4LL2A 3BA0A 4OEIA 4AUOA 1SU3A 1GENA 2MQSA 4YEHA 1GXDA 1FBLA 1QJSA 4G0DA 1HXNA 4RT6B 2CLTA 3V6NA 1ITVA 3C7XA 4FVLA 2JXYA 3OYOA 4HSDA 1PEXA
chains in the Genus database with same CATH superfamily
1RTGA 1CK7A 1QHUA 3LP9A 3S18A 4FU4A 4LL2A 3BA0A 4OEIA 4AUOA 1SU3A 1GENA 2MQSA 4YEHA 1GXDA 1FBLA 1QJSA 4G0DA 1HXNA 4RT6B 2CLTA 3V6NA 1ITVA 3C7XA 4FVLA 2JXYA 3OYOA 4HSDA 1PEXA
chains in the Genus database with same CATH topology
1RTGA 1CK7A 1QHUA 3LP9A 3S18A 4FU4A 4LL2A 3BA0A 4OEIA 4AUOA 1SU3A 1GENA 2MQSA 4YEHA 1GXDA 1FBLA 1QJSA 4G0DA 1HXNA 4RT6B 2CLTA 3V6NA 1ITVA 3C7XA 4FVLA 2JXYA 3OYOA 4HSDA 1PEXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RTG A;  1CK7 A;  1QHU A;  3LP9 A;  3S18 A;  4FU4 A;  4LL2 A;  3BA0 A;  4OEI A;  4AUO A;  1SU3 A;  1GEN A;  2MQS A;  4YEH A;  1GXD A;  1FBL A;  1QJS A;  4G0D A;  1HXN A;  4RT6 B;  2CLT A;  3V6N A;  1ITV A;  3C7X A;  4FVL A;  2JXY A;  3OYO A;  4HSD A;  1PEX A; 
#chains in the Genus database with same CATH topology
 1RTG A;  1CK7 A;  1QHU A;  3LP9 A;  3S18 A;  4FU4 A;  4LL2 A;  3BA0 A;  4OEI A;  4AUO A;  1SU3 A;  1GEN A;  2MQS A;  4YEH A;  1GXD A;  1FBL A;  1QJS A;  4G0D A;  1HXN A;  4RT6 B;  2CLT A;  3V6N A;  1ITV A;  3C7X A;  4FVL A;  2JXY A;  3OYO A;  4HSD A;  1PEX A; 
#chains in the Genus database with same CATH homology
 1RTG A;  1CK7 A;  1QHU A;  3LP9 A;  3S18 A;  4FU4 A;  4LL2 A;  3BA0 A;  4OEI A;  4AUO A;  1SU3 A;  1GEN A;  2MQS A;  4YEH A;  1GXD A;  1FBL A;  1QJS A;  4G0D A;  1HXN A;  4RT6 B;  2CLT A;  3V6N A;  1ITV A;  3C7X A;  4FVL A;  2JXY A;  3OYO A;  4HSD A;  1PEX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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