3C88A

Crystal structure of the catalytic domain of botulinum neurotoxin serotype a with inhibitory peptide rrgc
Total Genus 137
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
137
sequence length
422
structure length
422
Chain Sequence
PFVNKQFNYKDPVNGVDIAYIKIPNAGQMQPVKAFKIHNKIWVIPERDTFTNPEEGDLNPPPEAKQVPVSYYDSTYLSTDNEKDNYLKGVTKLFERIYSTDLGRMLLTSIVRGIPFWGGSTIDTELKVIDTNCINVIQPDGSYRSEELNLVIIGPSADIIQFECKSFGHEVLNLTRNGYGSTQYIRFSPDFTFGFEESLEVDTNPLLGAGKFATDPAVTLAHELIHAGHRLYGIAINPNRVFKVNTNAYYEMSGLEVSFEELRTFGGHDAKFIDSLQENEFRLYYYNKFKDIASTLNKAKSIVGTTASLQYMKNVFKEKYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAVFKINIVPKVNYTIYDGFNLRNTNLAANFNGQNTEINNMNFTKLKNFTGLF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase/hydrolase inhibitor
molecule keywords Botulinum neurotoxin A light chain
publication title Structure- and Substrate-based Inhibitor Design for Clostridium botulinum Neurotoxin Serotype A
pubmed doi rcsb
source organism Clostridium botulinum
total genus 137
structure length 422
sequence length 422
ec nomenclature ec 3.4.24.69: Bontoxilysin.
pdb deposition date 2008-02-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1240.10 Alpha Beta Alpha-Beta Complex Zincin-like Metalloproteases ("zincins"), catalytic domain like 3c88A00
3FFZA 5BQNA 3V0AB 3C89A 3C8AA 3ZURA 1T3CA 2NZ9A 4J1LA 3BTAA 4ZKTB 2G7PA 1S0CA 2A8AA 2ISEA 1S0BA 1ZL6A 1G9DA 3DSEA 4EJ5A 2G7KA 1G9BA 2NYYA 1F82A 3DDBA 3V0AA 3NF3A 1S0GA 1ZL5A 1E1HA 1S0FA 4KTXA 2FPQA 3ZUSA 1G9CA 2QN0A 3DEBA 3DS9A 4KUFA 2ISHA 4KS6A 3DDAA 2A97A 2XHLA 3ZUQA 3C8BA 3QW7A 1ZB7A 1S0DA 3QIXA 3BONA 3FIEA 1EPWA 3V0BA 3QJ0A 1S0EA 4ELCA 2W2DA 3BOKA 3V0BB 1YVGA 1I1EA 1F31A 1T3AA 1ZKWA 3QIYA 1XTGA 3VUOA 2IMAA 2ISGA 2ETFA 1ZKXA 1G9AA 3D3XA 2NP0A 1ZN3A 3QIZA 2G7NA 2IMBA 4ZJXA 3QW8A 1XTFA 2G7QA 3C88A 2IMCA 3FIIA 5BQMA 4EL4A 3QW5A 3QW6A 3K3QB 1Z7HA 2ILPA 3BOOA 3BWIA 4HEVA
chains in the Genus database with same CATH superfamily
4AW6A 3FFZA 5BQNA 3V0AB 3CQBA 3C89A 3C8AA 3ZURA 1T3CA 2NZ9A 4J1LA 3BTAA 4ZKTB 2G7PA 1S0CA 2A8AA 2ISEA 1S0BA 1ZL6A 1G9DA 3DSEA 4EJ5A 2G7KA 1G9BA 2NYYA 1F82A 3DDBA 3V0AA 4JIXA 3NF3A 1S0GA 1ZL5A 1E1HA 1S0FA 4KTXA 2FPQA 3ZUSA 1G9CA 2QN0A 3DEBA 3DS9A 4KUFA 2ISHA 4KS6A 3DDAA 2A97A 2XHLA 3ZUQA 3C8BA 3QW7A 1ZB7A 1S0DA 3QIXA 3BONA 3FIEA 1EPWA 4JIUA 3QJ0A 3V0BA 1S0EA 4ELCA 2W2DA 3BOKA 3V0BB 1YVGA 1I1EA 1F31A 1T3AA 1ZKWA 4IL3A 3QIYA 1XTGA 3VUOA 2IMAA 2ISGA 3E11A 2ETFA 1ZKXA 1G9AA 3D3XA 2NP0A 1ZN3A 2YPTA 3QIZA 2G7NA 2IMBA 4ZJXA 3QW8A 4QHFA 1XTFA 2G7QA 3C88A 2IMCA 3FIIA 5BQMA 4EL4A 3QW5A 3QW6A 3K3QB 1Z7HA 2ILPA 3BOOA 2EJQA 3BWIA 4HEVA
chains in the Genus database with same CATH topology
3FFZA 5BQNA 3V0AB 3C89A 3C8AA 3ZURA 1T3CA 2NZ9A 4J1LA 3BTAA 4ZKTB 2G7PA 1S0CA 2A8AA 2ISEA 1S0BA 1ZL6A 1G9DA 3DSEA 4EJ5A 2G7KA 1G9BA 2NYYA 1F82A 3DDBA 3V0AA 3NF3A 1S0GA 1ZL5A 1E1HA 1S0FA 4KTXA 2FPQA 3ZUSA 1G9CA 2QN0A 3DEBA 3DS9A 4KUFA 2ISHA 4KS6A 3DDAA 2A97A 2XHLA 3ZUQA 3C8BA 3QW7A 1ZB7A 1S0DA 3QIXA 3BONA 3FIEA 1EPWA 3V0BA 3QJ0A 1S0EA 4ELCA 2W2DA 3BOKA 3V0BB 1YVGA 1I1EA 1F31A 1T3AA 1ZKWA 3QIYA 1XTGA 3VUOA 2IMAA 2ISGA 2ETFA 1ZKXA 1G9AA 3D3XA 2NP0A 1ZN3A 3QIZA 2G7NA 2IMBA 4ZJXA 3QW8A 1XTFA 2G7QA 3C88A 2IMCA 3FIIA 5BQMA 4EL4A 3QW5A 3QW6A 3K3QB 1Z7HA 2ILPA 3BOOA 3BWIA 4HEVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FFZ A;  5BQN A;  3V0A B;  3C89 A;  3C8A A;  3ZUR A;  1T3C A;  2NZ9 A;  4J1L A;  3BTA A;  4ZKT B;  2G7P A;  1S0C A;  2A8A A;  2ISE A;  1S0B A;  1ZL6 A;  1G9D A;  3DSE A;  4EJ5 A;  2G7K A;  1G9B A;  2NYY A;  1F82 A;  3DDB A;  3V0A A;  3NF3 A;  1S0G A;  1ZL5 A;  1E1H A;  1S0F A;  4KTX A;  2FPQ A;  3ZUS A;  1G9C A;  2QN0 A;  3DEB A;  3DS9 A;  4KUF A;  2ISH A;  4KS6 A;  3DDA A;  2A97 A;  2XHL A;  3ZUQ A;  3C8B A;  3QW7 A;  1ZB7 A;  1S0D A;  3QIX A;  3BON A;  3FIE A;  1EPW A;  3V0B A;  3QJ0 A;  1S0E A;  4ELC A;  2W2D A;  3BOK A;  3V0B B;  1YVG A;  1I1E A;  1F31 A;  1T3A A;  1ZKW A;  3QIY A;  1XTG A;  3VUO A;  2IMA A;  2ISG A;  2ETF A;  1ZKX A;  1G9A A;  3D3X A;  2NP0 A;  1ZN3 A;  3QIZ A;  2G7N A;  2IMB A;  4ZJX A;  3QW8 A;  1XTF A;  2G7Q A;  3C88 A;  2IMC A;  3FII A;  5BQM A;  4EL4 A;  3QW5 A;  3QW6 A;  3K3Q B;  1Z7H A;  2ILP A;  3BOO A;  3BWI A;  4HEV A; 
#chains in the Genus database with same CATH topology
 4AW6 A;  3FFZ A;  5BQN A;  3V0A B;  3CQB A;  3C89 A;  3C8A A;  3ZUR A;  1T3C A;  2NZ9 A;  4J1L A;  3BTA A;  4ZKT B;  2G7P A;  1S0C A;  2A8A A;  2ISE A;  1S0B A;  1ZL6 A;  1G9D A;  3DSE A;  4EJ5 A;  2G7K A;  1G9B A;  2NYY A;  1F82 A;  3DDB A;  3V0A A;  4JIX A;  3NF3 A;  1S0G A;  1ZL5 A;  1E1H A;  1S0F A;  4KTX A;  2FPQ A;  3ZUS A;  1G9C A;  2QN0 A;  3DEB A;  3DS9 A;  4KUF A;  2ISH A;  4KS6 A;  3DDA A;  2A97 A;  2XHL A;  3ZUQ A;  3C8B A;  3QW7 A;  1ZB7 A;  1S0D A;  3QIX A;  3BON A;  3FIE A;  1EPW A;  4JIU A;  3QJ0 A;  3V0B A;  1S0E A;  4ELC A;  2W2D A;  3BOK A;  3V0B B;  1YVG A;  1I1E A;  1F31 A;  1T3A A;  1ZKW A;  4IL3 A;  3QIY A;  1XTG A;  3VUO A;  2IMA A;  2ISG A;  3E11 A;  2ETF A;  1ZKX A;  1G9A A;  3D3X A;  2NP0 A;  1ZN3 A;  2YPT A;  3QIZ A;  2G7N A;  2IMB A;  4ZJX A;  3QW8 A;  4QHF A;  1XTF A;  2G7Q A;  3C88 A;  2IMC A;  3FII A;  5BQM A;  4EL4 A;  3QW5 A;  3QW6 A;  3K3Q B;  1Z7H A;  2ILP A;  3BOO A;  2EJQ A;  3BWI A;  4HEV A; 
#chains in the Genus database with same CATH homology
 3FFZ A;  5BQN A;  3V0A B;  3C89 A;  3C8A A;  3ZUR A;  1T3C A;  2NZ9 A;  4J1L A;  3BTA A;  4ZKT B;  2G7P A;  1S0C A;  2A8A A;  2ISE A;  1S0B A;  1ZL6 A;  1G9D A;  3DSE A;  4EJ5 A;  2G7K A;  1G9B A;  2NYY A;  1F82 A;  3DDB A;  3V0A A;  3NF3 A;  1S0G A;  1ZL5 A;  1E1H A;  1S0F A;  4KTX A;  2FPQ A;  3ZUS A;  1G9C A;  2QN0 A;  3DEB A;  3DS9 A;  4KUF A;  2ISH A;  4KS6 A;  3DDA A;  2A97 A;  2XHL A;  3ZUQ A;  3C8B A;  3QW7 A;  1ZB7 A;  1S0D A;  3QIX A;  3BON A;  3FIE A;  1EPW A;  3V0B A;  3QJ0 A;  1S0E A;  4ELC A;  2W2D A;  3BOK A;  3V0B B;  1YVG A;  1I1E A;  1F31 A;  1T3A A;  1ZKW A;  3QIY A;  1XTG A;  3VUO A;  2IMA A;  2ISG A;  2ETF A;  1ZKX A;  1G9A A;  3D3X A;  2NP0 A;  1ZN3 A;  3QIZ A;  2G7N A;  2IMB A;  4ZJX A;  3QW8 A;  1XTF A;  2G7Q A;  3C88 A;  2IMC A;  3FII A;  5BQM A;  4EL4 A;  3QW5 A;  3QW6 A;  3K3Q B;  1Z7H A;  2ILP A;  3BOO A;  3BWI A;  4HEV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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