3CAOA

Oxidised structure of the acidic cytochrome c3 from desulfovibrio africanus
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
102
structure length
102
Chain Sequence
EDMTHVPTDAFGKLERPAAVFNHDEHNEKAGIESCNACHHVWVNGVLAEDEDSVGTPCSDCHALEQDGDTPGLQDAYHQQCWGCHEKQAKGPVMCGECHVKN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords CYTOCHROME C3
publication title Crystal structure of the oxidised and reduced acidic cytochrome c3from Desulfovibrio africanus.
pubmed doi rcsb
total genus 20
structure length 102
sequence length 102
ec nomenclature
pdb deposition date 1998-11-17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.10.10 Alpha Beta Alpha-Beta Complex Cytochrome C3 Cytochrome C3 3caoA00
2BQ4A 1UP9A 1A2IA 3SJ1X 1QN0A 1L3OA 2LZZA 1KWJA 4HC3A 2LDOA 1OFYA 1F22A 19HCA 3OUEA 3SJ4X 2A3MA 2A3PA 2YYWA 1W7OA 3BXUA 1Z1NX 1LM2A 2CYMA 2CDVA 1OFWA 1WR5A 2EWKA 1NEWA 3CARA 1IT1A 2EWUA 1J0PA 2FFNA 1HH5A 2EWIA 1GM4A 1RWJA 1H29A 1CZJA 1UPDA 1OS6A 2Z47A 1DUWA 1AQEA 3OV0A 2MZ9A 3H34A 1GMBA 3CAOA 2KMYA 2CVCA 2E84A 1WADA 4HAJA 2YXCA 1MDVA 1EHJA 3CYRA 1I77A 1J0OA 2BPNA 3H4NA 2N91A 1GYOA 4HB6A 4HB8A 3OUQA 4HBFA 3H33A 2CTHA 1GWSA 2CY3A 2YYXA 3SJ0X 2KSUA 3SELX 1QN1A 4HDLA
chains in the Genus database with same CATH superfamily
2BQ4A 1UP9A 1A2IA 3SJ1X 1QN0A 1L3OA 2LZZA 1KWJA 4HC3A 2LDOA 1OFYA 1F22A 19HCA 3OUEA 3SJ4X 2A3MA 2A3PA 2YYWA 1W7OA 3BXUA 1Z1NX 1LM2A 2CYMA 2CDVA 1OFWA 1WR5A 2EWKA 1NEWA 3CARA 1IT1A 2EWUA 1J0PA 2FFNA 1HH5A 2EWIA 1GM4A 1RWJA 1H29A 1CZJA 1UPDA 1OS6A 2Z47A 1DUWA 1AQEA 3OV0A 2MZ9A 3H34A 1GMBA 3CAOA 2KMYA 2CVCA 2E84A 1WADA 4HAJA 2YXCA 1MDVA 1EHJA 3CYRA 1I77A 1J0OA 2BPNA 3H4NA 2N91A 1GYOA 4HB6A 4HB8A 3OUQA 4HBFA 3H33A 2CTHA 1GWSA 2CY3A 2YYXA 3SJ0X 2KSUA 3SELX 1QN1A 4HDLA
chains in the Genus database with same CATH topology
2BQ4A 1UP9A 1A2IA 3SJ1X 1QN0A 1L3OA 2LZZA 1KWJA 4HC3A 2LDOA 1OFYA 1F22A 19HCA 3OUEA 3SJ4X 2A3MA 2A3PA 2YYWA 1W7OA 3BXUA 1Z1NX 1LM2A 2CYMA 2CDVA 1OFWA 1WR5A 2EWKA 1NEWA 3CARA 1IT1A 2EWUA 1J0PA 2FFNA 1HH5A 2EWIA 1GM4A 1RWJA 1H29A 1CZJA 1UPDA 1OS6A 2Z47A 1DUWA 1AQEA 3OV0A 2MZ9A 3H34A 1GMBA 3CAOA 2KMYA 2CVCA 2E84A 1WADA 4HAJA 2YXCA 1MDVA 1EHJA 3CYRA 1I77A 1J0OA 2BPNA 3H4NA 2N91A 1GYOA 4HB6A 4HB8A 3OUQA 4HBFA 3H33A 2CTHA 1GWSA 2CY3A 2YYXA 3SJ0X 2KSUA 3SELX 1QN1A 4HDLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BQ4 A;  1UP9 A;  1A2I A;  3SJ1 X;  1QN0 A;  1L3O A;  2LZZ A;  1KWJ A;  4HC3 A;  2LDO A;  1OFY A;  1F22 A;  19HC A;  3OUE A;  3SJ4 X;  2A3M A;  2A3P A;  2YYW A;  1W7O A;  3BXU A;  1Z1N X;  1LM2 A;  2CYM A;  2CDV A;  1OFW A;  1WR5 A;  2EWK A;  1NEW A;  3CAR A;  1IT1 A;  2EWU A;  1J0P A;  2FFN A;  1HH5 A;  2EWI A;  1GM4 A;  1RWJ A;  1H29 A;  1CZJ A;  1UPD A;  1OS6 A;  2Z47 A;  1DUW A;  1AQE A;  3OV0 A;  2MZ9 A;  3H34 A;  1GMB A;  3CAO A;  2KMY A;  2CVC A;  2E84 A;  1WAD A;  4HAJ A;  2YXC A;  1MDV A;  1EHJ A;  3CYR A;  1I77 A;  1J0O A;  2BPN A;  3H4N A;  2N91 A;  1GYO A;  4HB6 A;  4HB8 A;  3OUQ A;  4HBF A;  3H33 A;  2CTH A;  1GWS A;  2CY3 A;  2YYX A;  3SJ0 X;  2KSU A;  3SEL X;  1QN1 A;  4HDL A; 
#chains in the Genus database with same CATH topology
 2BQ4 A;  1UP9 A;  1A2I A;  3SJ1 X;  1QN0 A;  1L3O A;  2LZZ A;  1KWJ A;  4HC3 A;  2LDO A;  1OFY A;  1F22 A;  19HC A;  3OUE A;  3SJ4 X;  2A3M A;  2A3P A;  2YYW A;  1W7O A;  3BXU A;  1Z1N X;  1LM2 A;  2CYM A;  2CDV A;  1OFW A;  1WR5 A;  2EWK A;  1NEW A;  3CAR A;  1IT1 A;  2EWU A;  1J0P A;  2FFN A;  1HH5 A;  2EWI A;  1GM4 A;  1RWJ A;  1H29 A;  1CZJ A;  1UPD A;  1OS6 A;  2Z47 A;  1DUW A;  1AQE A;  3OV0 A;  2MZ9 A;  3H34 A;  1GMB A;  3CAO A;  2KMY A;  2CVC A;  2E84 A;  1WAD A;  4HAJ A;  2YXC A;  1MDV A;  1EHJ A;  3CYR A;  1I77 A;  1J0O A;  2BPN A;  3H4N A;  2N91 A;  1GYO A;  4HB6 A;  4HB8 A;  3OUQ A;  4HBF A;  3H33 A;  2CTH A;  1GWS A;  2CY3 A;  2YYX A;  3SJ0 X;  2KSU A;  3SEL X;  1QN1 A;  4HDL A; 
#chains in the Genus database with same CATH homology
 2BQ4 A;  1UP9 A;  1A2I A;  3SJ1 X;  1QN0 A;  1L3O A;  2LZZ A;  1KWJ A;  4HC3 A;  2LDO A;  1OFY A;  1F22 A;  19HC A;  3OUE A;  3SJ4 X;  2A3M A;  2A3P A;  2YYW A;  1W7O A;  3BXU A;  1Z1N X;  1LM2 A;  2CYM A;  2CDV A;  1OFW A;  1WR5 A;  2EWK A;  1NEW A;  3CAR A;  1IT1 A;  2EWU A;  1J0P A;  2FFN A;  1HH5 A;  2EWI A;  1GM4 A;  1RWJ A;  1H29 A;  1CZJ A;  1UPD A;  1OS6 A;  2Z47 A;  1DUW A;  1AQE A;  3OV0 A;  2MZ9 A;  3H34 A;  1GMB A;  3CAO A;  2KMY A;  2CVC A;  2E84 A;  1WAD A;  4HAJ A;  2YXC A;  1MDV A;  1EHJ A;  3CYR A;  1I77 A;  1J0O A;  2BPN A;  3H4N A;  2N91 A;  1GYO A;  4HB6 A;  4HB8 A;  3OUQ A;  4HBF A;  3H33 A;  2CTH A;  1GWS A;  2CY3 A;  2YYX A;  3SJ0 X;  2KSU A;  3SEL X;  1QN1 A;  4HDL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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