3CB5A

Crystal structure of the s. pombe peptidase homology domain of fact complex subunit spt16 (form a)
Total Genus 150
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
150
sequence length
444
structure length
444
Chain Sequence
b'GAMAEYEIDEITFHKRLGILLTSWKNEEDGKTLFQDCDSILVTVGAHDDTNPYQKSTALHTWLLGYEFPSTLILLEKHRITILTSVNKANMLTKLAETKGAAADVNILKRTKDAEENKKLFEKIIEYIRATNKKVGVFPKDKTQGKFINEWDSIFEPVKSEFNLVDASLGLAKCLAIKDEQELANIKGASRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQMESLIDNEAFFQTKSLKLGDIDLDQLEWCYTPIIQSGGSYDLKPSAITDDRNLHGDVVLCSLGFRYKSYCSNVGRTYLFDPDSEQQKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIRAKRPDLEPNFVRNLGAGIGIEFRESSLLVNAKNPRVLQAGMTLNLSIGFGNLINPHPKNSQSKEYALLLIDTIQITRSDPIVFTDSPKAQGDISYFFGED'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The FACT Spt16 "peptidase" domain is a histone H3-H4 binding module
pubmed doi rcsb
molecule keywords FACT complex subunit spt16
source organism Schizosaccharomyces pombe
molecule tags Transcription
total genus 150
structure length 444
sequence length 444
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-02-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF14826 FACT-Spt16_Nlob FACT complex subunit SPT16 N-terminal lobe domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 3cb5A01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 3cb5A02
2BWVA 2EVCA 2G6PA 4OOKA 1WBQA 2GGBA 5E5BA 2GG2A 1KQ0A 1JAWA 2P98A 4U6WA 1WY2A 4FO8A 1YVMA 5CDEA 1R5HA 1XNZA 3IG4A 4S2TP 3QOCA 2EA2A 4IF7A 3O5VA 1R5GA 4U71A 4ZWUA 4IDYA 1BN5A 2GA2A 1XGSA 4S2RP 5CNXA 2GGCA 5FCHA 2BWXA 3PKEA 3BITA 1BOAA 2ZSGA 2BHDA 5D6EA 1WL9A 4S00A 1XGMA 4EGEA 1XGNA 4MATA 1C24A 3IU9A 2Q92A 2V3ZA 2GG7A 2GG8A 5FCFA 4U76A 2B3LA 5JHUA 2V3YA 1YW7A 4U6EA 4FLIA 3RORA 2BB7A 4FO7A 4U70A 1N51A 2Q8KA 4RGZ1 3FM3A 2GG0A 1QXYA 4FKCA 1WKMA 5CIKA 1PV9A 4PNCA 3TB5A 1C27A 2EA4A 1W2MA 5CDLA 2ADUA 4IKSA 4A6WA 4IKRA 3FMRA 4FLKA 3PKCA 3CTZA 5JFRA 4B28A 1WL6A 2BWTA 3RVAA 5CE6A 4A6VA 3BIPA 2GZ5A 2GU4A 2V3XA 2BH3A 3PN9A 3IU7A 4FLLA 1C22A 4U6JA 2B3HA 1QXWA 4U75A 1B6AA 3FMQA 2Q96A 3CB5A 2MATA 3MX6A 1YW9A 4FUKA 5D6FA 1CHMA 1A16A 3D27A 2P9AA 3CB6A 2BHCA 2IW2A 2OKNA 3L7GA 1QZYA 4IPAA 3OOOA 2GG3A 2NQ7A 2GU5A 4JUQA 4RZYA 4IECA 4U73A 1M35A 1W7VA 1KP0A 2V6CA 3PKAA 3L24A 1O0XA 3MR1A 4U1BA 3IL0A 2BN7A 1KQ9A 2EVMA 2BWWA 4U6ZA 1Y1NA 1B59A 1WLRA 4S01A 1WN1A 3BIQA 4ZNGA 3PKBA 4IKUA 2BWUA 2GU6A 4IKTA 4U69A 5CDVA 2BWSA 5E2CA 3TAVA 1QXZA 2DFIA 2BHAA 3S6BA 4R60A 4ZWPA 4FLJA 4IU6A 4PV4A 3PEBA 1MATA 5CLSA 1YJ3A 4Z7MA 2BHBA 2NQ6A 4U6CA 2EVOA 2B3KA 3PKDA 2P99A 5JI6A 1C23A 2BWYA 4RZZA 1XGOA 3I7MA 3OVKA 3Q6DA 1YW8A 3IU8A 4HXXA 2Q95A 2Q93A 4ZWOA 1C21A 2Q94A 2GG9A 2GG5A 4QR8A 2GTXA 2OAZA 3MATA 4KM3A 2GU7A 1R58A 2HOWA
chains in the Genus database with same CATH superfamily
2BWVA 2EVCA 2G6PA 4OOKA 1WBQA 2GGBA 5E5BA 2GG2A 1KQ0A 1JAWA 2P98A 4U6WA 1WY2A 4FO8A 1YVMA 5CDEA 1R5HA 1XNZA 3IG4A 4S2TP 3QOCA 2EA2A 4IF7A 3O5VA 1R5GA 4U71A 4ZWUA 4IDYA 1BN5A 2GA2A 1XGSA 4S2RP 5CNXA 2GGCA 5FCHA 2BWXA 3PKEA 3BITA 1BOAA 2ZSGA 2BHDA 5D6EA 1WL9A 4S00A 1XGMA 4EGEA 1XGNA 4MATA 1C24A 3IU9A 2Q92A 2V3ZA 2GG7A 2GG8A 5FCFA 4U76A 2B3LA 5JHUA 2V3YA 1YW7A 4U6EA 4FLIA 3RORA 2BB7A 4FO7A 4U70A 1N51A 2Q8KA 4RGZ1 3FM3A 2GG0A 1QXYA 4FKCA 1WKMA 5CIKA 1PV9A 4PNCA 3TB5A 1C27A 2EA4A 1W2MA 5CDLA 2ADUA 4IKSA 4A6WA 4IKRA 3FMRA 4FLKA 3PKCA 3CTZA 5JFRA 4B28A 1WL6A 2BWTA 3RVAA 5CE6A 4A6VA 3BIPA 2GZ5A 2GU4A 2V3XA 2BH3A 3PN9A 3IU7A 4FLLA 1C22A 4U6JA 2B3HA 1QXWA 4U75A 1B6AA 3FMQA 2Q96A 3CB5A 2MATA 3MX6A 1YW9A 4FUKA 5D6FA 1CHMA 1A16A 3D27A 2P9AA 3CB6A 2BHCA 2IW2A 2OKNA 3L7GA 1QZYA 4IPAA 3OOOA 2GG3A 2NQ7A 2GU5A 4JUQA 4RZYA 4IECA 4U73A 1M35A 1W7VA 1KP0A 2V6CA 3PKAA 3L24A 1O0XA 3MR1A 4U1BA 3IL0A 2BN7A 1KQ9A 2EVMA 2BWWA 4U6ZA 1Y1NA 1B59A 1WLRA 4S01A 1WN1A 3BIQA 4ZNGA 3PKBA 4IKUA 2BWUA 2GU6A 4IKTA 4U69A 5CDVA 2BWSA 5E2CA 3TAVA 1QXZA 2DFIA 2BHAA 3S6BA 4R60A 4ZWPA 4FLJA 4IU6A 4PV4A 3PEBA 1MATA 5CLSA 1YJ3A 4Z7MA 2BHBA 2NQ6A 4U6CA 2EVOA 2B3KA 3PKDA 2P99A 5JI6A 1C23A 2BWYA 4RZZA 1XGOA 3I7MA 3OVKA 3Q6DA 1YW8A 3IU8A 4HXXA 2Q95A 2Q93A 4ZWOA 1C21A 2Q94A 2GG9A 2GG5A 4QR8A 2GTXA 2OAZA 3MATA 4KM3A 2GU7A 1R58A 2HOWA
chains in the Genus database with same CATH topology
2BWVA 2EVCA 2G6PA 4OOKA 1WBQA 2GGBA 5E5BA 2GG2A 1KQ0A 1JAWA 2P98A 4U6WA 1WY2A 4FO8A 1YVMA 5CDEA 1R5HA 1XNZA 3IG4A 4S2TP 3QOCA 2EA2A 4IF7A 3O5VA 1R5GA 4U71A 4ZWUA 4IDYA 1BN5A 2GA2A 1XGSA 4S2RP 5CNXA 2GGCA 5FCHA 2BWXA 3PKEA 3BITA 1BOAA 2ZSGA 2BHDA 5D6EA 1WL9A 4S00A 1XGMA 4EGEA 1XGNA 4MATA 1C24A 3IU9A 2Q92A 2V3ZA 2GG7A 2GG8A 5FCFA 4U76A 2B3LA 5JHUA 2V3YA 1YW7A 4U6EA 4FLIA 3RORA 2BB7A 4FO7A 4U70A 1N51A 2Q8KA 4RGZ1 3FM3A 2GG0A 1QXYA 4FKCA 1WKMA 5CIKA 1PV9A 4PNCA 3TB5A 1C27A 2EA4A 1W2MA 5CDLA 2ADUA 4IKSA 4A6WA 4IKRA 3FMRA 4FLKA 3PKCA 3CTZA 5JFRA 4B28A 1WL6A 2BWTA 3RVAA 5CE6A 4A6VA 3BIPA 2GZ5A 2GU4A 2V3XA 2BH3A 3PN9A 3IU7A 4FLLA 1C22A 4U6JA 2B3HA 1QXWA 4U75A 1B6AA 3FMQA 2Q96A 3CB5A 2MATA 3MX6A 1YW9A 4FUKA 5D6FA 1CHMA 1A16A 3D27A 2P9AA 3CB6A 2BHCA 2IW2A 2OKNA 3L7GA 1QZYA 4IPAA 3OOOA 2GG3A 2NQ7A 2GU5A 4JUQA 4RZYA 4IECA 4U73A 1M35A 1W7VA 1KP0A 2V6CA 3PKAA 3L24A 1O0XA 3MR1A 4U1BA 3IL0A 2BN7A 1KQ9A 2EVMA 2BWWA 4U6ZA 1Y1NA 1B59A 1WLRA 4S01A 1WN1A 3BIQA 4ZNGA 3PKBA 4IKUA 2BWUA 2GU6A 4IKTA 4U69A 5CDVA 2BWSA 5E2CA 3TAVA 1QXZA 2DFIA 2BHAA 3S6BA 4R60A 4ZWPA 4FLJA 4IU6A 4PV4A 3PEBA 1MATA 5CLSA 1YJ3A 4Z7MA 2BHBA 2NQ6A 4U6CA 2EVOA 2B3KA 3PKDA 2P99A 5JI6A 1C23A 2BWYA 4RZZA 1XGOA 3I7MA 3OVKA 3Q6DA 1YW8A 3IU8A 4HXXA 2Q95A 2Q93A 4ZWOA 1C21A 2Q94A 2GG9A 2GG5A 4QR8A 2GTXA 2OAZA 3MATA 4KM3A 2GU7A 1R58A 2HOWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BWV A;  2EVC A;  2G6P A;  4OOK A;  1WBQ A;  2GGB A;  5E5B A;  2GG2 A;  1KQ0 A;  1JAW A;  2P98 A;  4U6W A;  1WY2 A;  4FO8 A;  1YVM A;  5CDE A;  1R5H A;  1XNZ A;  3IG4 A;  4S2T P;  3QOC A;  2EA2 A;  4IF7 A;  3O5V A;  1R5G A;  4U71 A;  4ZWU A;  4IDY A;  1BN5 A;  2GA2 A;  1XGS A;  4S2R P;  5CNX A;  2GGC A;  5FCH A;  2BWX A;  3PKE A;  3BIT A;  1BOA A;  2ZSG A;  2BHD A;  5D6E A;  1WL9 A;  4S00 A;  1XGM A;  4EGE A;  1XGN A;  4MAT A;  1C24 A;  3IU9 A;  2Q92 A;  2V3Z A;  2GG7 A;  2GG8 A;  5FCF A;  4U76 A;  2B3L A;  5JHU A;  2V3Y A;  1YW7 A;  4U6E A;  4FLI A;  3ROR A;  2BB7 A;  4FO7 A;  4U70 A;  1N51 A;  2Q8K A;  4RGZ 1;  3FM3 A;  2GG0 A;  1QXY A;  4FKC A;  1WKM A;  5CIK A;  1PV9 A;  4PNC A;  3TB5 A;  1C27 A;  2EA4 A;  1W2M A;  5CDL A;  2ADU A;  4IKS A;  4A6W A;  4IKR A;  3FMR A;  4FLK A;  3PKC A;  3CTZ A;  5JFR A;  4B28 A;  1WL6 A;  2BWT A;  3RVA A;  5CE6 A;  4A6V A;  3BIP A;  2GZ5 A;  2GU4 A;  2V3X A;  2BH3 A;  3PN9 A;  3IU7 A;  4FLL A;  1C22 A;  4U6J A;  2B3H A;  1QXW A;  4U75 A;  1B6A A;  3FMQ A;  2Q96 A;  3CB5 A;  2MAT A;  3MX6 A;  1YW9 A;  4FUK A;  5D6F A;  1CHM A;  1A16 A;  3D27 A;  2P9A A;  3CB6 A;  2BHC A;  2IW2 A;  2OKN A;  3L7G A;  1QZY A;  4IPA A;  3OOO A;  2GG3 A;  2NQ7 A;  2GU5 A;  4JUQ A;  4RZY A;  4IEC A;  4U73 A;  1M35 A;  1W7V A;  1KP0 A;  2V6C A;  3PKA A;  3L24 A;  1O0X A;  3MR1 A;  4U1B A;  3IL0 A;  2BN7 A;  1KQ9 A;  2EVM A;  2BWW A;  4U6Z A;  1Y1N A;  1B59 A;  1WLR A;  4S01 A;  1WN1 A;  3BIQ A;  4ZNG A;  3PKB A;  4IKU A;  2BWU A;  2GU6 A;  4IKT A;  4U69 A;  5CDV A;  2BWS A;  5E2C A;  3TAV A;  1QXZ A;  2DFI A;  2BHA A;  3S6B A;  4R60 A;  4ZWP A;  4FLJ A;  4IU6 A;  4PV4 A;  3PEB A;  1MAT A;  5CLS A;  1YJ3 A;  4Z7M A;  2BHB A;  2NQ6 A;  4U6C A;  2EVO A;  2B3K A;  3PKD A;  2P99 A;  5JI6 A;  1C23 A;  2BWY A;  4RZZ A;  1XGO A;  3I7M A;  3OVK A;  3Q6D A;  1YW8 A;  3IU8 A;  4HXX A;  2Q95 A;  2Q93 A;  4ZWO A;  1C21 A;  2Q94 A;  2GG9 A;  2GG5 A;  4QR8 A;  2GTX A;  2OAZ A;  3MAT A;  4KM3 A;  2GU7 A;  1R58 A;  2HOW A; 
#chains in the Genus database with same CATH topology
 2BWV A;  2EVC A;  2G6P A;  4OOK A;  1WBQ A;  2GGB A;  5E5B A;  2GG2 A;  1KQ0 A;  1JAW A;  2P98 A;  4U6W A;  1WY2 A;  4FO8 A;  1YVM A;  5CDE A;  1R5H A;  1XNZ A;  3IG4 A;  4S2T P;  3QOC A;  2EA2 A;  4IF7 A;  3O5V A;  1R5G A;  4U71 A;  4ZWU A;  4IDY A;  1BN5 A;  2GA2 A;  1XGS A;  4S2R P;  5CNX A;  2GGC A;  5FCH A;  2BWX A;  3PKE A;  3BIT A;  1BOA A;  2ZSG A;  2BHD A;  5D6E A;  1WL9 A;  4S00 A;  1XGM A;  4EGE A;  1XGN A;  4MAT A;  1C24 A;  3IU9 A;  2Q92 A;  2V3Z A;  2GG7 A;  2GG8 A;  5FCF A;  4U76 A;  2B3L A;  5JHU A;  2V3Y A;  1YW7 A;  4U6E A;  4FLI A;  3ROR A;  2BB7 A;  4FO7 A;  4U70 A;  1N51 A;  2Q8K A;  4RGZ 1;  3FM3 A;  2GG0 A;  1QXY A;  4FKC A;  1WKM A;  5CIK A;  1PV9 A;  4PNC A;  3TB5 A;  1C27 A;  2EA4 A;  1W2M A;  5CDL A;  2ADU A;  4IKS A;  4A6W A;  4IKR A;  3FMR A;  4FLK A;  3PKC A;  3CTZ A;  5JFR A;  4B28 A;  1WL6 A;  2BWT A;  3RVA A;  5CE6 A;  4A6V A;  3BIP A;  2GZ5 A;  2GU4 A;  2V3X A;  2BH3 A;  3PN9 A;  3IU7 A;  4FLL A;  1C22 A;  4U6J A;  2B3H A;  1QXW A;  4U75 A;  1B6A A;  3FMQ A;  2Q96 A;  3CB5 A;  2MAT A;  3MX6 A;  1YW9 A;  4FUK A;  5D6F A;  1CHM A;  1A16 A;  3D27 A;  2P9A A;  3CB6 A;  2BHC A;  2IW2 A;  2OKN A;  3L7G A;  1QZY A;  4IPA A;  3OOO A;  2GG3 A;  2NQ7 A;  2GU5 A;  4JUQ A;  4RZY A;  4IEC A;  4U73 A;  1M35 A;  1W7V A;  1KP0 A;  2V6C A;  3PKA A;  3L24 A;  1O0X A;  3MR1 A;  4U1B A;  3IL0 A;  2BN7 A;  1KQ9 A;  2EVM A;  2BWW A;  4U6Z A;  1Y1N A;  1B59 A;  1WLR A;  4S01 A;  1WN1 A;  3BIQ A;  4ZNG A;  3PKB A;  4IKU A;  2BWU A;  2GU6 A;  4IKT A;  4U69 A;  5CDV A;  2BWS A;  5E2C A;  3TAV A;  1QXZ A;  2DFI A;  2BHA A;  3S6B A;  4R60 A;  4ZWP A;  4FLJ A;  4IU6 A;  4PV4 A;  3PEB A;  1MAT A;  5CLS A;  1YJ3 A;  4Z7M A;  2BHB A;  2NQ6 A;  4U6C A;  2EVO A;  2B3K A;  3PKD A;  2P99 A;  5JI6 A;  1C23 A;  2BWY A;  4RZZ A;  1XGO A;  3I7M A;  3OVK A;  3Q6D A;  1YW8 A;  3IU8 A;  4HXX A;  2Q95 A;  2Q93 A;  4ZWO A;  1C21 A;  2Q94 A;  2GG9 A;  2GG5 A;  4QR8 A;  2GTX A;  2OAZ A;  3MAT A;  4KM3 A;  2GU7 A;  1R58 A;  2HOW A; 
#chains in the Genus database with same CATH homology
 2BWV A;  2EVC A;  2G6P A;  4OOK A;  1WBQ A;  2GGB A;  5E5B A;  2GG2 A;  1KQ0 A;  1JAW A;  2P98 A;  4U6W A;  1WY2 A;  4FO8 A;  1YVM A;  5CDE A;  1R5H A;  1XNZ A;  3IG4 A;  4S2T P;  3QOC A;  2EA2 A;  4IF7 A;  3O5V A;  1R5G A;  4U71 A;  4ZWU A;  4IDY A;  1BN5 A;  2GA2 A;  1XGS A;  4S2R P;  5CNX A;  2GGC A;  5FCH A;  2BWX A;  3PKE A;  3BIT A;  1BOA A;  2ZSG A;  2BHD A;  5D6E A;  1WL9 A;  4S00 A;  1XGM A;  4EGE A;  1XGN A;  4MAT A;  1C24 A;  3IU9 A;  2Q92 A;  2V3Z A;  2GG7 A;  2GG8 A;  5FCF A;  4U76 A;  2B3L A;  5JHU A;  2V3Y A;  1YW7 A;  4U6E A;  4FLI A;  3ROR A;  2BB7 A;  4FO7 A;  4U70 A;  1N51 A;  2Q8K A;  4RGZ 1;  3FM3 A;  2GG0 A;  1QXY A;  4FKC A;  1WKM A;  5CIK A;  1PV9 A;  4PNC A;  3TB5 A;  1C27 A;  2EA4 A;  1W2M A;  5CDL A;  2ADU A;  4IKS A;  4A6W A;  4IKR A;  3FMR A;  4FLK A;  3PKC A;  3CTZ A;  5JFR A;  4B28 A;  1WL6 A;  2BWT A;  3RVA A;  5CE6 A;  4A6V A;  3BIP A;  2GZ5 A;  2GU4 A;  2V3X A;  2BH3 A;  3PN9 A;  3IU7 A;  4FLL A;  1C22 A;  4U6J A;  2B3H A;  1QXW A;  4U75 A;  1B6A A;  3FMQ A;  2Q96 A;  3CB5 A;  2MAT A;  3MX6 A;  1YW9 A;  4FUK A;  5D6F A;  1CHM A;  1A16 A;  3D27 A;  2P9A A;  3CB6 A;  2BHC A;  2IW2 A;  2OKN A;  3L7G A;  1QZY A;  4IPA A;  3OOO A;  2GG3 A;  2NQ7 A;  2GU5 A;  4JUQ A;  4RZY A;  4IEC A;  4U73 A;  1M35 A;  1W7V A;  1KP0 A;  2V6C A;  3PKA A;  3L24 A;  1O0X A;  3MR1 A;  4U1B A;  3IL0 A;  2BN7 A;  1KQ9 A;  2EVM A;  2BWW A;  4U6Z A;  1Y1N A;  1B59 A;  1WLR A;  4S01 A;  1WN1 A;  3BIQ A;  4ZNG A;  3PKB A;  4IKU A;  2BWU A;  2GU6 A;  4IKT A;  4U69 A;  5CDV A;  2BWS A;  5E2C A;  3TAV A;  1QXZ A;  2DFI A;  2BHA A;  3S6B A;  4R60 A;  4ZWP A;  4FLJ A;  4IU6 A;  4PV4 A;  3PEB A;  1MAT A;  5CLS A;  1YJ3 A;  4Z7M A;  2BHB A;  2NQ6 A;  4U6C A;  2EVO A;  2B3K A;  3PKD A;  2P99 A;  5JI6 A;  1C23 A;  2BWY A;  4RZZ A;  1XGO A;  3I7M A;  3OVK A;  3Q6D A;  1YW8 A;  3IU8 A;  4HXX A;  2Q95 A;  2Q93 A;  4ZWO A;  1C21 A;  2Q94 A;  2GG9 A;  2GG5 A;  4QR8 A;  2GTX A;  2OAZ A;  3MAT A;  4KM3 A;  2GU7 A;  1R58 A;  2HOW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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