3CB5A

Crystal structure of the s. pombe peptidase homology domain of fact complex subunit spt16 (form a)
Total Genus 150
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
150
sequence length
444
structure length
444
Chain Sequence
GAMAEYEIDEITFHKRLGILLTSWKNEEDGKTLFQDCDSILVTVGAHDDTNPYQKSTALHTWLLGYEFPSTLILLEKHRITILTSVNKANMLTKLAETKGAAADVNILKRTKDAEENKKLFEKIIEYIRATNKKVGVFPKDKTQGKFINEWDSIFEPVKSEFNLVDASLGLAKCLAIKDEQELANIKGASRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQMESLIDNEAFFQTKSLKLGDIDLDQLEWCYTPIIQSGGSYDLKPSAITDDRNLHGDVVLCSLGFRYKSYCSNVGRTYLFDPDSEQQKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIRAKRPDLEPNFVRNLGAGIGIEFRESSLLVNAKNPRVLQAGMTLNLSIGFGNLINPHPKNSQSKEYALLLIDTIQITRSDPIVFTDSPKAQGDISYFFGED
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The FACT Spt16 "peptidase" domain is a histone H3-H4 binding module
pubmed doi rcsb
source organism Schizosaccharomyces pombe
molecule tags Transcription
molecule keywords FACT complex subunit spt16
total genus 150
structure length 444
sequence length 444
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-02-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF14826 FACT-Spt16_Nlob FACT complex subunit SPT16 N-terminal lobe domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 3cb5A01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 3cb5A02
3IG4A 5D6FA 2GG9A 1C23A 3PKCA 4A6WA 2IW2A 3QOCA 1KQ9A 3MATA 3PKAA 4IECA 1Y1NA 1WLRA 3PKDA 3MR1A 2ADUA 4ZWUA 1QZYA 4IKTA 3L7GA 5CIKA 2NQ6A 5D6EA 4PV4A 4U73A 1C21A 3IU8A 3PKEA 3TB5A 4R60A 1WL6A 1BOAA 2BWUA 2GGBA 4U6WA 4U6CA 2EVCA 2GU5A 1WBQA 3OVKA 2Q93A 3IU7A 1QXWA 3CTZA 4KM3A 3S6BA 4U1BA 2GGCA 5CLSA 3L24A 2OAZA 2DFIA 4IDYA 2GG5A 1KQ0A 4IKRA 4FKCA 2GG2A 1N51A 1R5HA 4U69A 2Q94A 2Q95A 2OKNA 2NQ7A 4ZWPA 3RVAA 5CDEA 1YW8A 5JFRA 4B28A 4U75A 2V6CA 2BWXA 5JHUA 1C22A 1B59A 4QR8A 2GG0A 5CDVA 3O5VA 2GZ5A 2GG8A 4RGZ1 3RORA 2GU6A 1W7VA 2GU4A 2Q96A 2BHCA 3CB6A 2GG7A 4JUQA 3PKBA 2ZSGA 4A6VA 5CE6A 2BHBA 3BIQA 3BITA 4U71A 1W2MA 2EVMA 2MATA 3IU9A 1B6AA 3I7MA 5CDLA 1A16A 1XNZA 2BHDA 4U70A 4FLLA 4S2TP 2B3LA 5CNXA 1WY2A 4FO8A 2BB7A 1WKMA 1XGSA 5JI6A 1YW9A 3Q6DA 2P99A 4IU6A 2EVOA 1R58A 2BWVA 3BIPA 1BN5A 2BWSA 4MATA 4FLIA 1M35A 4U6JA 2Q8KA 3PN9A 1WN1A 4PNCA 2GA2A 4IF7A 3D27A 3MX6A 1PV9A 4ZWOA 4S01A 5FCHA 2BWYA 1QXZA 1XGOA 3OOOA 4FLJA 1QXYA 4U6EA 1JAWA 2BHAA 2Q92A 4IKUA 2G6PA 2V3YA 2P98A 1R5GA 3FMQA 1XGMA 1WL9A 4ZNGA 3PEBA 1O0XA 4FUKA 1CHMA 5FCFA 2GU7A 2GG3A 4IKSA 4FLKA 2EA2A 1KP0A 1C27A 4HXXA 4RZYA 4RZZA 3FMRA 3CB5A 3IL0A 2B3HA 4S00A 1MATA 1YVMA 2EA4A 4U6ZA 2BWWA 1YJ3A 2B3KA 3TAVA 2V3ZA 2P9AA 4U76A 2GTXA 2BH3A 2HOWA 4S2RP 4OOKA 3FM3A 1C24A 4FO7A 1XGNA 1YW7A 2V3XA 4EGEA 4IPAA 5E5BA 4Z7MA 2BWTA 2BN7A 5E2CA
chains in the Genus database with same CATH superfamily
3IG4A 5D6FA 2GG9A 1C23A 3PKCA 4A6WA 2IW2A 3QOCA 1KQ9A 3MATA 3PKAA 4IECA 1Y1NA 1WLRA 3PKDA 3MR1A 2ADUA 4ZWUA 1QZYA 4IKTA 3L7GA 5CIKA 2NQ6A 5D6EA 4PV4A 4U73A 1C21A 3IU8A 3PKEA 3TB5A 4R60A 1WL6A 1BOAA 2BWUA 2GGBA 4U6WA 4U6CA 2EVCA 2GU5A 1WBQA 3OVKA 2Q93A 3IU7A 1QXWA 3CTZA 4KM3A 3S6BA 4U1BA 2GGCA 5CLSA 3L24A 2OAZA 2DFIA 4IDYA 2GG5A 1KQ0A 4IKRA 4FKCA 2GG2A 1N51A 1R5HA 4U69A 2Q94A 2Q95A 2OKNA 2NQ7A 4ZWPA 3RVAA 5CDEA 1YW8A 5JFRA 4B28A 4U75A 2V6CA 2BWXA 5JHUA 1C22A 1B59A 4QR8A 2GG0A 5CDVA 3O5VA 2GZ5A 2GG8A 4RGZ1 3RORA 2GU6A 1W7VA 2GU4A 2Q96A 2BHCA 3CB6A 2GG7A 4JUQA 3PKBA 2ZSGA 4A6VA 5CE6A 2BHBA 3BIQA 3BITA 4U71A 1W2MA 2EVMA 2MATA 3IU9A 1B6AA 3I7MA 5CDLA 1A16A 1XNZA 2BHDA 4U70A 4FLLA 4S2TP 2B3LA 5CNXA 1WY2A 4FO8A 2BB7A 1WKMA 1XGSA 5JI6A 1YW9A 3Q6DA 2P99A 4IU6A 2EVOA 1R58A 2BWVA 3BIPA 1BN5A 2BWSA 4MATA 4FLIA 1M35A 4U6JA 2Q8KA 3PN9A 1WN1A 4PNCA 2GA2A 4IF7A 3D27A 3MX6A 1PV9A 4ZWOA 4S01A 5FCHA 2BWYA 1QXZA 1XGOA 3OOOA 4FLJA 1QXYA 4U6EA 1JAWA 2BHAA 2Q92A 4IKUA 2G6PA 2V3YA 2P98A 1R5GA 3FMQA 1XGMA 1WL9A 4ZNGA 3PEBA 1O0XA 4FUKA 1CHMA 5FCFA 2GU7A 2GG3A 4IKSA 4FLKA 2EA2A 1KP0A 1C27A 4HXXA 4RZYA 4RZZA 3FMRA 3CB5A 3IL0A 2B3HA 4S00A 1MATA 1YVMA 2EA4A 4U6ZA 2BWWA 1YJ3A 2B3KA 3TAVA 2V3ZA 2P9AA 4U76A 2GTXA 2BH3A 2HOWA 4S2RP 4OOKA 3FM3A 1C24A 4FO7A 1XGNA 1YW7A 2V3XA 4EGEA 4IPAA 5E5BA 4Z7MA 2BWTA 2BN7A 5E2CA
chains in the Genus database with same CATH topology
3IG4A 5D6FA 2GG9A 1C23A 3PKCA 4A6WA 2IW2A 3QOCA 1KQ9A 3MATA 3PKAA 4IECA 1Y1NA 1WLRA 3PKDA 3MR1A 2ADUA 4ZWUA 1QZYA 4IKTA 3L7GA 5CIKA 2NQ6A 5D6EA 4PV4A 4U73A 1C21A 3IU8A 3PKEA 3TB5A 4R60A 1WL6A 1BOAA 2BWUA 2GGBA 4U6WA 4U6CA 2EVCA 2GU5A 1WBQA 3OVKA 2Q93A 3IU7A 1QXWA 3CTZA 4KM3A 3S6BA 4U1BA 2GGCA 5CLSA 3L24A 2OAZA 2DFIA 4IDYA 2GG5A 1KQ0A 4IKRA 4FKCA 2GG2A 1N51A 1R5HA 4U69A 2Q94A 2Q95A 2OKNA 2NQ7A 4ZWPA 3RVAA 5CDEA 1YW8A 5JFRA 4B28A 4U75A 2V6CA 2BWXA 5JHUA 1C22A 1B59A 4QR8A 2GG0A 5CDVA 3O5VA 2GZ5A 2GG8A 4RGZ1 3RORA 2GU6A 1W7VA 2GU4A 2Q96A 2BHCA 3CB6A 2GG7A 4JUQA 3PKBA 2ZSGA 4A6VA 5CE6A 2BHBA 3BIQA 3BITA 4U71A 1W2MA 2EVMA 2MATA 3IU9A 1B6AA 3I7MA 5CDLA 1A16A 1XNZA 2BHDA 4U70A 4FLLA 4S2TP 2B3LA 5CNXA 1WY2A 4FO8A 2BB7A 1WKMA 1XGSA 5JI6A 1YW9A 3Q6DA 2P99A 4IU6A 2EVOA 1R58A 2BWVA 3BIPA 1BN5A 2BWSA 4MATA 4FLIA 1M35A 4U6JA 2Q8KA 3PN9A 1WN1A 4PNCA 2GA2A 4IF7A 3D27A 3MX6A 1PV9A 4ZWOA 4S01A 5FCHA 2BWYA 1QXZA 1XGOA 3OOOA 4FLJA 1QXYA 4U6EA 1JAWA 2BHAA 2Q92A 4IKUA 2G6PA 2V3YA 2P98A 1R5GA 3FMQA 1XGMA 1WL9A 4ZNGA 3PEBA 1O0XA 4FUKA 1CHMA 5FCFA 2GU7A 2GG3A 4IKSA 4FLKA 2EA2A 1KP0A 1C27A 4HXXA 4RZYA 4RZZA 3FMRA 3CB5A 3IL0A 2B3HA 4S00A 1MATA 1YVMA 2EA4A 4U6ZA 2BWWA 1YJ3A 2B3KA 3TAVA 2V3ZA 2P9AA 4U76A 2GTXA 2BH3A 2HOWA 4S2RP 4OOKA 3FM3A 1C24A 4FO7A 1XGNA 1YW7A 2V3XA 4EGEA 4IPAA 5E5BA 4Z7MA 2BWTA 2BN7A 5E2CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3IG4 A;  5D6F A;  2GG9 A;  1C23 A;  3PKC A;  4A6W A;  2IW2 A;  3QOC A;  1KQ9 A;  3MAT A;  3PKA A;  4IEC A;  1Y1N A;  1WLR A;  3PKD A;  3MR1 A;  2ADU A;  4ZWU A;  1QZY A;  4IKT A;  3L7G A;  5CIK A;  2NQ6 A;  5D6E A;  4PV4 A;  4U73 A;  1C21 A;  3IU8 A;  3PKE A;  3TB5 A;  4R60 A;  1WL6 A;  1BOA A;  2BWU A;  2GGB A;  4U6W A;  4U6C A;  2EVC A;  2GU5 A;  1WBQ A;  3OVK A;  2Q93 A;  3IU7 A;  1QXW A;  3CTZ A;  4KM3 A;  3S6B A;  4U1B A;  2GGC A;  5CLS A;  3L24 A;  2OAZ A;  2DFI A;  4IDY A;  2GG5 A;  1KQ0 A;  4IKR A;  4FKC A;  2GG2 A;  1N51 A;  1R5H A;  4U69 A;  2Q94 A;  2Q95 A;  2OKN A;  2NQ7 A;  4ZWP A;  3RVA A;  5CDE A;  1YW8 A;  5JFR A;  4B28 A;  4U75 A;  2V6C A;  2BWX A;  5JHU A;  1C22 A;  1B59 A;  4QR8 A;  2GG0 A;  5CDV A;  3O5V A;  2GZ5 A;  2GG8 A;  4RGZ 1;  3ROR A;  2GU6 A;  1W7V A;  2GU4 A;  2Q96 A;  2BHC A;  3CB6 A;  2GG7 A;  4JUQ A;  3PKB A;  2ZSG A;  4A6V A;  5CE6 A;  2BHB A;  3BIQ A;  3BIT A;  4U71 A;  1W2M A;  2EVM A;  2MAT A;  3IU9 A;  1B6A A;  3I7M A;  5CDL A;  1A16 A;  1XNZ A;  2BHD A;  4U70 A;  4FLL A;  4S2T P;  2B3L A;  5CNX A;  1WY2 A;  4FO8 A;  2BB7 A;  1WKM A;  1XGS A;  5JI6 A;  1YW9 A;  3Q6D A;  2P99 A;  4IU6 A;  2EVO A;  1R58 A;  2BWV A;  3BIP A;  1BN5 A;  2BWS A;  4MAT A;  4FLI A;  1M35 A;  4U6J A;  2Q8K A;  3PN9 A;  1WN1 A;  4PNC A;  2GA2 A;  4IF7 A;  3D27 A;  3MX6 A;  1PV9 A;  4ZWO A;  4S01 A;  5FCH A;  2BWY A;  1QXZ A;  1XGO A;  3OOO A;  4FLJ A;  1QXY A;  4U6E A;  1JAW A;  2BHA A;  2Q92 A;  4IKU A;  2G6P A;  2V3Y A;  2P98 A;  1R5G A;  3FMQ A;  1XGM A;  1WL9 A;  4ZNG A;  3PEB A;  1O0X A;  4FUK A;  1CHM A;  5FCF A;  2GU7 A;  2GG3 A;  4IKS A;  4FLK A;  2EA2 A;  1KP0 A;  1C27 A;  4HXX A;  4RZY A;  4RZZ A;  3FMR A;  3CB5 A;  3IL0 A;  2B3H A;  4S00 A;  1MAT A;  1YVM A;  2EA4 A;  4U6Z A;  2BWW A;  1YJ3 A;  2B3K A;  3TAV A;  2V3Z A;  2P9A A;  4U76 A;  2GTX A;  2BH3 A;  2HOW A;  4S2R P;  4OOK A;  3FM3 A;  1C24 A;  4FO7 A;  1XGN A;  1YW7 A;  2V3X A;  4EGE A;  4IPA A;  5E5B A;  4Z7M A;  2BWT A;  2BN7 A;  5E2C A; 
#chains in the Genus database with same CATH topology
 3IG4 A;  5D6F A;  2GG9 A;  1C23 A;  3PKC A;  4A6W A;  2IW2 A;  3QOC A;  1KQ9 A;  3MAT A;  3PKA A;  4IEC A;  1Y1N A;  1WLR A;  3PKD A;  3MR1 A;  2ADU A;  4ZWU A;  1QZY A;  4IKT A;  3L7G A;  5CIK A;  2NQ6 A;  5D6E A;  4PV4 A;  4U73 A;  1C21 A;  3IU8 A;  3PKE A;  3TB5 A;  4R60 A;  1WL6 A;  1BOA A;  2BWU A;  2GGB A;  4U6W A;  4U6C A;  2EVC A;  2GU5 A;  1WBQ A;  3OVK A;  2Q93 A;  3IU7 A;  1QXW A;  3CTZ A;  4KM3 A;  3S6B A;  4U1B A;  2GGC A;  5CLS A;  3L24 A;  2OAZ A;  2DFI A;  4IDY A;  2GG5 A;  1KQ0 A;  4IKR A;  4FKC A;  2GG2 A;  1N51 A;  1R5H A;  4U69 A;  2Q94 A;  2Q95 A;  2OKN A;  2NQ7 A;  4ZWP A;  3RVA A;  5CDE A;  1YW8 A;  5JFR A;  4B28 A;  4U75 A;  2V6C A;  2BWX A;  5JHU A;  1C22 A;  1B59 A;  4QR8 A;  2GG0 A;  5CDV A;  3O5V A;  2GZ5 A;  2GG8 A;  4RGZ 1;  3ROR A;  2GU6 A;  1W7V A;  2GU4 A;  2Q96 A;  2BHC A;  3CB6 A;  2GG7 A;  4JUQ A;  3PKB A;  2ZSG A;  4A6V A;  5CE6 A;  2BHB A;  3BIQ A;  3BIT A;  4U71 A;  1W2M A;  2EVM A;  2MAT A;  3IU9 A;  1B6A A;  3I7M A;  5CDL A;  1A16 A;  1XNZ A;  2BHD A;  4U70 A;  4FLL A;  4S2T P;  2B3L A;  5CNX A;  1WY2 A;  4FO8 A;  2BB7 A;  1WKM A;  1XGS A;  5JI6 A;  1YW9 A;  3Q6D A;  2P99 A;  4IU6 A;  2EVO A;  1R58 A;  2BWV A;  3BIP A;  1BN5 A;  2BWS A;  4MAT A;  4FLI A;  1M35 A;  4U6J A;  2Q8K A;  3PN9 A;  1WN1 A;  4PNC A;  2GA2 A;  4IF7 A;  3D27 A;  3MX6 A;  1PV9 A;  4ZWO A;  4S01 A;  5FCH A;  2BWY A;  1QXZ A;  1XGO A;  3OOO A;  4FLJ A;  1QXY A;  4U6E A;  1JAW A;  2BHA A;  2Q92 A;  4IKU A;  2G6P A;  2V3Y A;  2P98 A;  1R5G A;  3FMQ A;  1XGM A;  1WL9 A;  4ZNG A;  3PEB A;  1O0X A;  4FUK A;  1CHM A;  5FCF A;  2GU7 A;  2GG3 A;  4IKS A;  4FLK A;  2EA2 A;  1KP0 A;  1C27 A;  4HXX A;  4RZY A;  4RZZ A;  3FMR A;  3CB5 A;  3IL0 A;  2B3H A;  4S00 A;  1MAT A;  1YVM A;  2EA4 A;  4U6Z A;  2BWW A;  1YJ3 A;  2B3K A;  3TAV A;  2V3Z A;  2P9A A;  4U76 A;  2GTX A;  2BH3 A;  2HOW A;  4S2R P;  4OOK A;  3FM3 A;  1C24 A;  4FO7 A;  1XGN A;  1YW7 A;  2V3X A;  4EGE A;  4IPA A;  5E5B A;  4Z7M A;  2BWT A;  2BN7 A;  5E2C A; 
#chains in the Genus database with same CATH homology
 3IG4 A;  5D6F A;  2GG9 A;  1C23 A;  3PKC A;  4A6W A;  2IW2 A;  3QOC A;  1KQ9 A;  3MAT A;  3PKA A;  4IEC A;  1Y1N A;  1WLR A;  3PKD A;  3MR1 A;  2ADU A;  4ZWU A;  1QZY A;  4IKT A;  3L7G A;  5CIK A;  2NQ6 A;  5D6E A;  4PV4 A;  4U73 A;  1C21 A;  3IU8 A;  3PKE A;  3TB5 A;  4R60 A;  1WL6 A;  1BOA A;  2BWU A;  2GGB A;  4U6W A;  4U6C A;  2EVC A;  2GU5 A;  1WBQ A;  3OVK A;  2Q93 A;  3IU7 A;  1QXW A;  3CTZ A;  4KM3 A;  3S6B A;  4U1B A;  2GGC A;  5CLS A;  3L24 A;  2OAZ A;  2DFI A;  4IDY A;  2GG5 A;  1KQ0 A;  4IKR A;  4FKC A;  2GG2 A;  1N51 A;  1R5H A;  4U69 A;  2Q94 A;  2Q95 A;  2OKN A;  2NQ7 A;  4ZWP A;  3RVA A;  5CDE A;  1YW8 A;  5JFR A;  4B28 A;  4U75 A;  2V6C A;  2BWX A;  5JHU A;  1C22 A;  1B59 A;  4QR8 A;  2GG0 A;  5CDV A;  3O5V A;  2GZ5 A;  2GG8 A;  4RGZ 1;  3ROR A;  2GU6 A;  1W7V A;  2GU4 A;  2Q96 A;  2BHC A;  3CB6 A;  2GG7 A;  4JUQ A;  3PKB A;  2ZSG A;  4A6V A;  5CE6 A;  2BHB A;  3BIQ A;  3BIT A;  4U71 A;  1W2M A;  2EVM A;  2MAT A;  3IU9 A;  1B6A A;  3I7M A;  5CDL A;  1A16 A;  1XNZ A;  2BHD A;  4U70 A;  4FLL A;  4S2T P;  2B3L A;  5CNX A;  1WY2 A;  4FO8 A;  2BB7 A;  1WKM A;  1XGS A;  5JI6 A;  1YW9 A;  3Q6D A;  2P99 A;  4IU6 A;  2EVO A;  1R58 A;  2BWV A;  3BIP A;  1BN5 A;  2BWS A;  4MAT A;  4FLI A;  1M35 A;  4U6J A;  2Q8K A;  3PN9 A;  1WN1 A;  4PNC A;  2GA2 A;  4IF7 A;  3D27 A;  3MX6 A;  1PV9 A;  4ZWO A;  4S01 A;  5FCH A;  2BWY A;  1QXZ A;  1XGO A;  3OOO A;  4FLJ A;  1QXY A;  4U6E A;  1JAW A;  2BHA A;  2Q92 A;  4IKU A;  2G6P A;  2V3Y A;  2P98 A;  1R5G A;  3FMQ A;  1XGM A;  1WL9 A;  4ZNG A;  3PEB A;  1O0X A;  4FUK A;  1CHM A;  5FCF A;  2GU7 A;  2GG3 A;  4IKS A;  4FLK A;  2EA2 A;  1KP0 A;  1C27 A;  4HXX A;  4RZY A;  4RZZ A;  3FMR A;  3CB5 A;  3IL0 A;  2B3H A;  4S00 A;  1MAT A;  1YVM A;  2EA4 A;  4U6Z A;  2BWW A;  1YJ3 A;  2B3K A;  3TAV A;  2V3Z A;  2P9A A;  4U76 A;  2GTX A;  2BH3 A;  2HOW A;  4S2R P;  4OOK A;  3FM3 A;  1C24 A;  4FO7 A;  1XGN A;  1YW7 A;  2V3X A;  4EGE A;  4IPA A;  5E5B A;  4Z7M A;  2BWT A;  2BN7 A;  5E2C A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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