3CB5A

Crystal structure of the s. pombe peptidase homology domain of fact complex subunit spt16 (form a)
Total Genus 150
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
150
sequence length
444
structure length
444
Chain Sequence
GAMAEYEIDEITFHKRLGILLTSWKNEEDGKTLFQDCDSILVTVGAHDDTNPYQKSTALHTWLLGYEFPSTLILLEKHRITILTSVNKANMLTKLAETKGAAADVNILKRTKDAEENKKLFEKIIEYIRATNKKVGVFPKDKTQGKFINEWDSIFEPVKSEFNLVDASLGLAKCLAIKDEQELANIKGASRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQMESLIDNEAFFQTKSLKLGDIDLDQLEWCYTPIIQSGGSYDLKPSAITDDRNLHGDVVLCSLGFRYKSYCSNVGRTYLFDPDSEQQKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIRAKRPDLEPNFVRNLGAGIGIEFRESSLLVNAKNPRVLQAGMTLNLSIGFGNLINPHPKNSQSKEYALLLIDTIQITRSDPIVFTDSPKAQGDISYFFGED
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords FACT complex subunit spt16
publication title The FACT Spt16 "peptidase" domain is a histone H3-H4 binding module
pubmed doi rcsb
source organism Schizosaccharomyces pombe
molecule tags Transcription
total genus 150
structure length 444
sequence length 444
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-02-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF14826 FACT-Spt16_Nlob FACT complex subunit SPT16 N-terminal lobe domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 3cb5A01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 3cb5A02
3IG4A 4U6WA 1M35A 5D6FA 2BWTA 4MATA 2HOWA 1C27A 1W7VA 4IKTA 3FM3A 2ZSGA 4KM3A 2GTXA 1C24A 2NQ6A 1XGNA 3CB5A 4FLLA 3Q6DA 3MATA 2GU4A 2P98A 2BHBA 1QXZA 2P9AA 1BOAA 3FMRA 4IKSA 4U6CA 1MATA 5CNXA 2Q8KA 3PEBA 3OOOA 2BHDA 2V3XA 1YJ3A 1R58A 2V3ZA 4JUQA 1C22A 4FO7A 2P99A 3RORA 2BWWA 4FUKA 1WL6A 2EVCA 1WY2A 4IU6A 1YVMA 2BH3A 1Y1NA 1WBQA 4U76A 4U73A 2BN7A 5CIKA 3L24A 4FKCA 2BWYA 2GA2A 4RGZ1 2GG2A 2OKNA 4ZWOA 4R60A 1KQ9A 2EVMA 4PV4A 4EGEA 3IL0A 5CE6A 4ZNGA 2B3LA 3BIPA 2GZ5A 4FLIA 3QOCA 4FLJA 1QXWA 3PKDA 1KP0A 2B3KA 3RVAA 3TB5A 1CHMA 1BN5A 3L7GA 1WLRA 1QXYA 2DFIA 2GG5A 5D6EA 2GG0A 4HXXA 3TAVA 2BWUA 5CDLA 1C21A 3D27A 4A6WA 5JFRA 4FLKA 1B6AA 2GU5A 4S2RP 2V3YA 1R5GA 1YW9A 4IECA 5FCFA 4ZWUA 1WL9A 4U71A 2GG8A 3BIQA 1C23A 2Q94A 4PNCA 5JI6A 5CDEA 2Q92A 5JHUA 2GU6A 2IW2A 4IPAA 1R5HA 2BHAA 5E2CA 2ADUA 3CB6A 5CDVA 2OAZA 1N51A 4U6ZA 3O5VA 4U6JA 4U70A 4RZYA 4S01A 1XGOA 4IKRA 1W2MA 3IU8A 1WN1A 4RZZA 4OOKA 2MATA 4B28A 4S2TP 1XGMA 3IU7A 1JAWA 3OVKA 3PKCA 2G6PA 2BWVA 1XGSA 2GG3A 1YW8A 2Q93A 1KQ0A 4ZWPA 1XNZA 4U69A 2B3HA 4U75A 2GU7A 1WKMA 2Q95A 4IDYA 3PKBA 2GGCA 3BITA 1YW7A 1O0XA 2BHCA 4Z7MA 3I7MA 2GGBA 2NQ7A 2BWSA 3PN9A 3FMQA 3MR1A 2EA2A 2V6CA 5CLSA 4A6VA 2EVOA 4U1BA 4FO8A 2BWXA 1B59A 5E5BA 1QZYA 3CTZA 4U6EA 3S6BA 1PV9A 2GG7A 3PKAA 4IF7A 2EA4A 4S00A 2GG9A 3PKEA 5FCHA 2BB7A 2Q96A 4QR8A 3IU9A 3MX6A 1A16A 4IKUA
chains in the Genus database with same CATH superfamily
3IG4A 4U6WA 1M35A 5D6FA 2BWTA 4MATA 2HOWA 1C27A 1W7VA 4IKTA 3FM3A 2ZSGA 4KM3A 2GTXA 1C24A 2NQ6A 1XGNA 3CB5A 4FLLA 3Q6DA 3MATA 2GU4A 2P98A 2BHBA 1QXZA 2P9AA 1BOAA 3FMRA 4IKSA 4U6CA 1MATA 5CNXA 2Q8KA 3PEBA 3OOOA 2BHDA 2V3XA 1YJ3A 1R58A 2V3ZA 4JUQA 1C22A 4FO7A 2P99A 3RORA 2BWWA 4FUKA 1WL6A 2EVCA 1WY2A 4IU6A 1YVMA 2BH3A 1Y1NA 1WBQA 4U76A 4U73A 2BN7A 5CIKA 3L24A 4FKCA 2BWYA 2GA2A 4RGZ1 2GG2A 2OKNA 4ZWOA 4R60A 1KQ9A 2EVMA 4PV4A 4EGEA 3IL0A 5CE6A 4ZNGA 2B3LA 3BIPA 2GZ5A 4FLIA 3QOCA 4FLJA 1QXWA 3PKDA 1KP0A 2B3KA 3RVAA 3TB5A 1CHMA 1BN5A 3L7GA 1WLRA 1QXYA 2DFIA 2GG5A 5D6EA 2GG0A 4HXXA 3TAVA 2BWUA 5CDLA 1C21A 3D27A 4A6WA 5JFRA 4FLKA 1B6AA 2GU5A 4S2RP 2V3YA 1R5GA 1YW9A 4IECA 5FCFA 4ZWUA 1WL9A 4U71A 2GG8A 3BIQA 1C23A 2Q94A 4PNCA 5JI6A 5CDEA 2Q92A 5JHUA 2GU6A 2IW2A 4IPAA 1R5HA 2BHAA 5E2CA 2ADUA 3CB6A 5CDVA 2OAZA 1N51A 4U6ZA 3O5VA 4U6JA 4U70A 4RZYA 4S01A 1XGOA 4IKRA 1W2MA 3IU8A 1WN1A 4RZZA 4OOKA 2MATA 4B28A 4S2TP 1XGMA 3IU7A 1JAWA 3OVKA 3PKCA 2G6PA 2BWVA 1XGSA 2GG3A 1YW8A 2Q93A 1KQ0A 4ZWPA 1XNZA 4U69A 2B3HA 4U75A 2GU7A 1WKMA 2Q95A 4IDYA 3PKBA 2GGCA 3BITA 1YW7A 1O0XA 2BHCA 4Z7MA 3I7MA 2GGBA 2NQ7A 2BWSA 3PN9A 3FMQA 3MR1A 2EA2A 2V6CA 5CLSA 4A6VA 2EVOA 4U1BA 4FO8A 2BWXA 1B59A 5E5BA 1QZYA 3CTZA 4U6EA 3S6BA 1PV9A 2GG7A 3PKAA 4IF7A 2EA4A 4S00A 2GG9A 3PKEA 5FCHA 2BB7A 2Q96A 4QR8A 3IU9A 3MX6A 1A16A 4IKUA
chains in the Genus database with same CATH topology
3IG4A 4U6WA 1M35A 5D6FA 2BWTA 4MATA 2HOWA 1C27A 1W7VA 4IKTA 3FM3A 2ZSGA 4KM3A 2GTXA 1C24A 2NQ6A 1XGNA 3CB5A 4FLLA 3Q6DA 3MATA 2GU4A 2P98A 2BHBA 1QXZA 2P9AA 1BOAA 3FMRA 4IKSA 4U6CA 1MATA 5CNXA 2Q8KA 3PEBA 3OOOA 2BHDA 2V3XA 1YJ3A 1R58A 2V3ZA 4JUQA 1C22A 4FO7A 2P99A 3RORA 2BWWA 4FUKA 1WL6A 2EVCA 1WY2A 4IU6A 1YVMA 2BH3A 1Y1NA 1WBQA 4U76A 4U73A 2BN7A 5CIKA 3L24A 4FKCA 2BWYA 2GA2A 4RGZ1 2GG2A 2OKNA 4ZWOA 4R60A 1KQ9A 2EVMA 4PV4A 4EGEA 3IL0A 5CE6A 4ZNGA 2B3LA 3BIPA 2GZ5A 4FLIA 3QOCA 4FLJA 1QXWA 3PKDA 1KP0A 2B3KA 3RVAA 3TB5A 1CHMA 1BN5A 3L7GA 1WLRA 1QXYA 2DFIA 2GG5A 5D6EA 2GG0A 4HXXA 3TAVA 2BWUA 5CDLA 1C21A 3D27A 4A6WA 5JFRA 4FLKA 1B6AA 2GU5A 4S2RP 2V3YA 1R5GA 1YW9A 4IECA 5FCFA 4ZWUA 1WL9A 4U71A 2GG8A 3BIQA 1C23A 2Q94A 4PNCA 5JI6A 5CDEA 2Q92A 5JHUA 2GU6A 2IW2A 4IPAA 1R5HA 2BHAA 5E2CA 2ADUA 3CB6A 5CDVA 2OAZA 1N51A 4U6ZA 3O5VA 4U6JA 4U70A 4RZYA 4S01A 1XGOA 4IKRA 1W2MA 3IU8A 1WN1A 4RZZA 4OOKA 2MATA 4B28A 4S2TP 1XGMA 3IU7A 1JAWA 3OVKA 3PKCA 2G6PA 2BWVA 1XGSA 2GG3A 1YW8A 2Q93A 1KQ0A 4ZWPA 1XNZA 4U69A 2B3HA 4U75A 2GU7A 1WKMA 2Q95A 4IDYA 3PKBA 2GGCA 3BITA 1YW7A 1O0XA 2BHCA 4Z7MA 3I7MA 2GGBA 2NQ7A 2BWSA 3PN9A 3FMQA 3MR1A 2EA2A 2V6CA 5CLSA 4A6VA 2EVOA 4U1BA 4FO8A 2BWXA 1B59A 5E5BA 1QZYA 3CTZA 4U6EA 3S6BA 1PV9A 2GG7A 3PKAA 4IF7A 2EA4A 4S00A 2GG9A 3PKEA 5FCHA 2BB7A 2Q96A 4QR8A 3IU9A 3MX6A 1A16A 4IKUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3IG4 A;  4U6W A;  1M35 A;  5D6F A;  2BWT A;  4MAT A;  2HOW A;  1C27 A;  1W7V A;  4IKT A;  3FM3 A;  2ZSG A;  4KM3 A;  2GTX A;  1C24 A;  2NQ6 A;  1XGN A;  3CB5 A;  4FLL A;  3Q6D A;  3MAT A;  2GU4 A;  2P98 A;  2BHB A;  1QXZ A;  2P9A A;  1BOA A;  3FMR A;  4IKS A;  4U6C A;  1MAT A;  5CNX A;  2Q8K A;  3PEB A;  3OOO A;  2BHD A;  2V3X A;  1YJ3 A;  1R58 A;  2V3Z A;  4JUQ A;  1C22 A;  4FO7 A;  2P99 A;  3ROR A;  2BWW A;  4FUK A;  1WL6 A;  2EVC A;  1WY2 A;  4IU6 A;  1YVM A;  2BH3 A;  1Y1N A;  1WBQ A;  4U76 A;  4U73 A;  2BN7 A;  5CIK A;  3L24 A;  4FKC A;  2BWY A;  2GA2 A;  4RGZ 1;  2GG2 A;  2OKN A;  4ZWO A;  4R60 A;  1KQ9 A;  2EVM A;  4PV4 A;  4EGE A;  3IL0 A;  5CE6 A;  4ZNG A;  2B3L A;  3BIP A;  2GZ5 A;  4FLI A;  3QOC A;  4FLJ A;  1QXW A;  3PKD A;  1KP0 A;  2B3K A;  3RVA A;  3TB5 A;  1CHM A;  1BN5 A;  3L7G A;  1WLR A;  1QXY A;  2DFI A;  2GG5 A;  5D6E A;  2GG0 A;  4HXX A;  3TAV A;  2BWU A;  5CDL A;  1C21 A;  3D27 A;  4A6W A;  5JFR A;  4FLK A;  1B6A A;  2GU5 A;  4S2R P;  2V3Y A;  1R5G A;  1YW9 A;  4IEC A;  5FCF A;  4ZWU A;  1WL9 A;  4U71 A;  2GG8 A;  3BIQ A;  1C23 A;  2Q94 A;  4PNC A;  5JI6 A;  5CDE A;  2Q92 A;  5JHU A;  2GU6 A;  2IW2 A;  4IPA A;  1R5H A;  2BHA A;  5E2C A;  2ADU A;  3CB6 A;  5CDV A;  2OAZ A;  1N51 A;  4U6Z A;  3O5V A;  4U6J A;  4U70 A;  4RZY A;  4S01 A;  1XGO A;  4IKR A;  1W2M A;  3IU8 A;  1WN1 A;  4RZZ A;  4OOK A;  2MAT A;  4B28 A;  4S2T P;  1XGM A;  3IU7 A;  1JAW A;  3OVK A;  3PKC A;  2G6P A;  2BWV A;  1XGS A;  2GG3 A;  1YW8 A;  2Q93 A;  1KQ0 A;  4ZWP A;  1XNZ A;  4U69 A;  2B3H A;  4U75 A;  2GU7 A;  1WKM A;  2Q95 A;  4IDY A;  3PKB A;  2GGC A;  3BIT A;  1YW7 A;  1O0X A;  2BHC A;  4Z7M A;  3I7M A;  2GGB A;  2NQ7 A;  2BWS A;  3PN9 A;  3FMQ A;  3MR1 A;  2EA2 A;  2V6C A;  5CLS A;  4A6V A;  2EVO A;  4U1B A;  4FO8 A;  2BWX A;  1B59 A;  5E5B A;  1QZY A;  3CTZ A;  4U6E A;  3S6B A;  1PV9 A;  2GG7 A;  3PKA A;  4IF7 A;  2EA4 A;  4S00 A;  2GG9 A;  3PKE A;  5FCH A;  2BB7 A;  2Q96 A;  4QR8 A;  3IU9 A;  3MX6 A;  1A16 A;  4IKU A; 
#chains in the Genus database with same CATH topology
 3IG4 A;  4U6W A;  1M35 A;  5D6F A;  2BWT A;  4MAT A;  2HOW A;  1C27 A;  1W7V A;  4IKT A;  3FM3 A;  2ZSG A;  4KM3 A;  2GTX A;  1C24 A;  2NQ6 A;  1XGN A;  3CB5 A;  4FLL A;  3Q6D A;  3MAT A;  2GU4 A;  2P98 A;  2BHB A;  1QXZ A;  2P9A A;  1BOA A;  3FMR A;  4IKS A;  4U6C A;  1MAT A;  5CNX A;  2Q8K A;  3PEB A;  3OOO A;  2BHD A;  2V3X A;  1YJ3 A;  1R58 A;  2V3Z A;  4JUQ A;  1C22 A;  4FO7 A;  2P99 A;  3ROR A;  2BWW A;  4FUK A;  1WL6 A;  2EVC A;  1WY2 A;  4IU6 A;  1YVM A;  2BH3 A;  1Y1N A;  1WBQ A;  4U76 A;  4U73 A;  2BN7 A;  5CIK A;  3L24 A;  4FKC A;  2BWY A;  2GA2 A;  4RGZ 1;  2GG2 A;  2OKN A;  4ZWO A;  4R60 A;  1KQ9 A;  2EVM A;  4PV4 A;  4EGE A;  3IL0 A;  5CE6 A;  4ZNG A;  2B3L A;  3BIP A;  2GZ5 A;  4FLI A;  3QOC A;  4FLJ A;  1QXW A;  3PKD A;  1KP0 A;  2B3K A;  3RVA A;  3TB5 A;  1CHM A;  1BN5 A;  3L7G A;  1WLR A;  1QXY A;  2DFI A;  2GG5 A;  5D6E A;  2GG0 A;  4HXX A;  3TAV A;  2BWU A;  5CDL A;  1C21 A;  3D27 A;  4A6W A;  5JFR A;  4FLK A;  1B6A A;  2GU5 A;  4S2R P;  2V3Y A;  1R5G A;  1YW9 A;  4IEC A;  5FCF A;  4ZWU A;  1WL9 A;  4U71 A;  2GG8 A;  3BIQ A;  1C23 A;  2Q94 A;  4PNC A;  5JI6 A;  5CDE A;  2Q92 A;  5JHU A;  2GU6 A;  2IW2 A;  4IPA A;  1R5H A;  2BHA A;  5E2C A;  2ADU A;  3CB6 A;  5CDV A;  2OAZ A;  1N51 A;  4U6Z A;  3O5V A;  4U6J A;  4U70 A;  4RZY A;  4S01 A;  1XGO A;  4IKR A;  1W2M A;  3IU8 A;  1WN1 A;  4RZZ A;  4OOK A;  2MAT A;  4B28 A;  4S2T P;  1XGM A;  3IU7 A;  1JAW A;  3OVK A;  3PKC A;  2G6P A;  2BWV A;  1XGS A;  2GG3 A;  1YW8 A;  2Q93 A;  1KQ0 A;  4ZWP A;  1XNZ A;  4U69 A;  2B3H A;  4U75 A;  2GU7 A;  1WKM A;  2Q95 A;  4IDY A;  3PKB A;  2GGC A;  3BIT A;  1YW7 A;  1O0X A;  2BHC A;  4Z7M A;  3I7M A;  2GGB A;  2NQ7 A;  2BWS A;  3PN9 A;  3FMQ A;  3MR1 A;  2EA2 A;  2V6C A;  5CLS A;  4A6V A;  2EVO A;  4U1B A;  4FO8 A;  2BWX A;  1B59 A;  5E5B A;  1QZY A;  3CTZ A;  4U6E A;  3S6B A;  1PV9 A;  2GG7 A;  3PKA A;  4IF7 A;  2EA4 A;  4S00 A;  2GG9 A;  3PKE A;  5FCH A;  2BB7 A;  2Q96 A;  4QR8 A;  3IU9 A;  3MX6 A;  1A16 A;  4IKU A; 
#chains in the Genus database with same CATH homology
 3IG4 A;  4U6W A;  1M35 A;  5D6F A;  2BWT A;  4MAT A;  2HOW A;  1C27 A;  1W7V A;  4IKT A;  3FM3 A;  2ZSG A;  4KM3 A;  2GTX A;  1C24 A;  2NQ6 A;  1XGN A;  3CB5 A;  4FLL A;  3Q6D A;  3MAT A;  2GU4 A;  2P98 A;  2BHB A;  1QXZ A;  2P9A A;  1BOA A;  3FMR A;  4IKS A;  4U6C A;  1MAT A;  5CNX A;  2Q8K A;  3PEB A;  3OOO A;  2BHD A;  2V3X A;  1YJ3 A;  1R58 A;  2V3Z A;  4JUQ A;  1C22 A;  4FO7 A;  2P99 A;  3ROR A;  2BWW A;  4FUK A;  1WL6 A;  2EVC A;  1WY2 A;  4IU6 A;  1YVM A;  2BH3 A;  1Y1N A;  1WBQ A;  4U76 A;  4U73 A;  2BN7 A;  5CIK A;  3L24 A;  4FKC A;  2BWY A;  2GA2 A;  4RGZ 1;  2GG2 A;  2OKN A;  4ZWO A;  4R60 A;  1KQ9 A;  2EVM A;  4PV4 A;  4EGE A;  3IL0 A;  5CE6 A;  4ZNG A;  2B3L A;  3BIP A;  2GZ5 A;  4FLI A;  3QOC A;  4FLJ A;  1QXW A;  3PKD A;  1KP0 A;  2B3K A;  3RVA A;  3TB5 A;  1CHM A;  1BN5 A;  3L7G A;  1WLR A;  1QXY A;  2DFI A;  2GG5 A;  5D6E A;  2GG0 A;  4HXX A;  3TAV A;  2BWU A;  5CDL A;  1C21 A;  3D27 A;  4A6W A;  5JFR A;  4FLK A;  1B6A A;  2GU5 A;  4S2R P;  2V3Y A;  1R5G A;  1YW9 A;  4IEC A;  5FCF A;  4ZWU A;  1WL9 A;  4U71 A;  2GG8 A;  3BIQ A;  1C23 A;  2Q94 A;  4PNC A;  5JI6 A;  5CDE A;  2Q92 A;  5JHU A;  2GU6 A;  2IW2 A;  4IPA A;  1R5H A;  2BHA A;  5E2C A;  2ADU A;  3CB6 A;  5CDV A;  2OAZ A;  1N51 A;  4U6Z A;  3O5V A;  4U6J A;  4U70 A;  4RZY A;  4S01 A;  1XGO A;  4IKR A;  1W2M A;  3IU8 A;  1WN1 A;  4RZZ A;  4OOK A;  2MAT A;  4B28 A;  4S2T P;  1XGM A;  3IU7 A;  1JAW A;  3OVK A;  3PKC A;  2G6P A;  2BWV A;  1XGS A;  2GG3 A;  1YW8 A;  2Q93 A;  1KQ0 A;  4ZWP A;  1XNZ A;  4U69 A;  2B3H A;  4U75 A;  2GU7 A;  1WKM A;  2Q95 A;  4IDY A;  3PKB A;  2GGC A;  3BIT A;  1YW7 A;  1O0X A;  2BHC A;  4Z7M A;  3I7M A;  2GGB A;  2NQ7 A;  2BWS A;  3PN9 A;  3FMQ A;  3MR1 A;  2EA2 A;  2V6C A;  5CLS A;  4A6V A;  2EVO A;  4U1B A;  4FO8 A;  2BWX A;  1B59 A;  5E5B A;  1QZY A;  3CTZ A;  4U6E A;  3S6B A;  1PV9 A;  2GG7 A;  3PKA A;  4IF7 A;  2EA4 A;  4S00 A;  2GG9 A;  3PKE A;  5FCH A;  2BB7 A;  2Q96 A;  4QR8 A;  3IU9 A;  3MX6 A;  1A16 A;  4IKU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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