3CB5A

Crystal structure of the s. pombe peptidase homology domain of fact complex subunit spt16 (form a)
Total Genus 150
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
150
sequence length
444
structure length
444
Chain Sequence
GAMAEYEIDEITFHKRLGILLTSWKNEEDGKTLFQDCDSILVTVGAHDDTNPYQKSTALHTWLLGYEFPSTLILLEKHRITILTSVNKANMLTKLAETKGAAADVNILKRTKDAEENKKLFEKIIEYIRATNKKVGVFPKDKTQGKFINEWDSIFEPVKSEFNLVDASLGLAKCLAIKDEQELANIKGASRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQMESLIDNEAFFQTKSLKLGDIDLDQLEWCYTPIIQSGGSYDLKPSAITDDRNLHGDVVLCSLGFRYKSYCSNVGRTYLFDPDSEQQKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIRAKRPDLEPNFVRNLGAGIGIEFRESSLLVNAKNPRVLQAGMTLNLSIGFGNLINPHPKNSQSKEYALLLIDTIQITRSDPIVFTDSPKAQGDISYFFGED
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
source organism Schizosaccharomyces pombe
publication title The FACT Spt16 "peptidase" domain is a histone H3-H4 binding module
pubmed doi rcsb
molecule keywords FACT complex subunit spt16
total genus 150
structure length 444
sequence length 444
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-02-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF14826 FACT-Spt16_Nlob FACT complex subunit SPT16 N-terminal lobe domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 3cb5A01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 3cb5A02
1O0XA 4U6ZA 1MATA 5D6EA 2OKNA 3RVAA 2OAZA 4FLLA 4IU6A 2P99A 2NQ6A 2BHDA 1R5GA 3FMRA 4IF7A 1M35A 1B6AA 1B59A 3Q6DA 1Y1NA 2GU5A 3TAVA 4ZWOA 2Q94A 4Z7MA 3CB6A 1XGSA 4R60A 4RZYA 1C22A 2GA2A 4EGEA 5JFRA 3PKDA 5CDEA 1WL6A 3MX6A 3L24A 2V3YA 2EVOA 4S01A 1KQ0A 2IW2A 1WL9A 2ZSGA 3OVKA 3IU7A 2Q95A 4U73A 5JI6A 2GU4A 2BHAA 2B3LA 2Q96A 3PKAA 3PEBA 4IKSA 1QXWA 4IPAA 5CE6A 2BH3A 2EA2A 3PKCA 5CDLA 4IECA 1A16A 4U70A 2EA4A 4FUKA 4FO8A 4JUQA 3MR1A 4OOKA 2GG3A 1YW9A 3CTZA 4IKTA 1YVMA 3FM3A 1WBQA 3IG4A 2V6CA 3MATA 2BWVA 2GG7A 2GZ5A 3IL0A 3PKBA 1QZYA 3QOCA 1C27A 1PV9A 4IKRA 5E2CA 2BHCA 2BWSA 4S00A 4S2TP 5FCFA 4FKCA 4ZWPA 2GG2A 2GG8A 1CHMA 4U6JA 2HOWA 4FLKA 3PN9A 1JAWA 5E5BA 3IU8A 2V3XA 1WN1A 2GGBA 4FLJA 2B3KA 1C24A 2G6PA 4IKUA 2NQ7A 2P9AA 4A6WA 5CIKA 5FCHA 2GG5A 1R58A 4U71A 5CLSA 4A6VA 2MATA 1N51A 3BIPA 1R5HA 3TB5A 1WLRA 2V3ZA 1C23A 1QXZA 3D27A 4PNCA 2BN7A 4U75A 4B28A 2BWYA 1QXYA 5JHUA 3BITA 1YJ3A 2GG9A 3L7GA 3O5VA 4IDYA 4U1BA 2GTXA 1XGMA 2BB7A 2Q8KA 2EVCA 4S2RP 5CNXA 4U6CA 4RZZA 4ZWUA 2GU6A 1YW7A 4U69A 1YW8A 1XGOA 2GG0A 4U76A 2BWTA 1XGNA 2GU7A 3CB5A 4FLIA 3PKEA 2BHBA 1C21A 2ADUA 3I7MA 3RORA 1WY2A 5CDVA 2DFIA 5D6FA 2B3HA 2BWXA 4ZNGA 2EVMA 4RGZ1 1BN5A 4KM3A 1BOAA 4FO7A 1W2MA 2Q93A 3FMQA 3IU9A 3BIQA 2BWUA 4QR8A 4HXXA 1KQ9A 2Q92A 1XNZA 2P98A 4PV4A 3OOOA 4U6WA 1W7VA 2BWWA 4MATA 2GGCA 1WKMA 4U6EA 3S6BA 1KP0A
chains in the Genus database with same CATH superfamily
1O0XA 4U6ZA 1MATA 5D6EA 2OKNA 3RVAA 2OAZA 4FLLA 4IU6A 2P99A 2NQ6A 2BHDA 1R5GA 3FMRA 4IF7A 1M35A 1B6AA 1B59A 3Q6DA 1Y1NA 2GU5A 3TAVA 4ZWOA 2Q94A 4Z7MA 3CB6A 1XGSA 4R60A 4RZYA 1C22A 2GA2A 4EGEA 5JFRA 3PKDA 5CDEA 1WL6A 3MX6A 3L24A 2V3YA 2EVOA 4S01A 1KQ0A 2IW2A 1WL9A 2ZSGA 3OVKA 3IU7A 2Q95A 4U73A 5JI6A 2GU4A 2BHAA 2B3LA 2Q96A 3PKAA 3PEBA 4IKSA 1QXWA 4IPAA 5CE6A 2BH3A 2EA2A 3PKCA 5CDLA 4IECA 1A16A 4U70A 2EA4A 4FUKA 4FO8A 4JUQA 3MR1A 4OOKA 2GG3A 1YW9A 3CTZA 4IKTA 1YVMA 3FM3A 1WBQA 3IG4A 2V6CA 3MATA 2BWVA 2GG7A 2GZ5A 3IL0A 3PKBA 1QZYA 3QOCA 1C27A 1PV9A 4IKRA 5E2CA 2BHCA 2BWSA 4S00A 4S2TP 5FCFA 4FKCA 4ZWPA 2GG2A 2GG8A 1CHMA 4U6JA 2HOWA 4FLKA 3PN9A 1JAWA 5E5BA 3IU8A 2V3XA 1WN1A 2GGBA 4FLJA 2B3KA 1C24A 2G6PA 4IKUA 2NQ7A 2P9AA 4A6WA 5CIKA 5FCHA 2GG5A 1R58A 4U71A 5CLSA 4A6VA 2MATA 1N51A 3BIPA 1R5HA 3TB5A 1WLRA 2V3ZA 1C23A 1QXZA 3D27A 4PNCA 2BN7A 4U75A 4B28A 2BWYA 1QXYA 5JHUA 3BITA 1YJ3A 2GG9A 3L7GA 3O5VA 4IDYA 4U1BA 2GTXA 1XGMA 2BB7A 2Q8KA 2EVCA 4S2RP 5CNXA 4U6CA 4RZZA 4ZWUA 2GU6A 1YW7A 4U69A 1YW8A 1XGOA 2GG0A 4U76A 2BWTA 1XGNA 2GU7A 3CB5A 4FLIA 3PKEA 2BHBA 1C21A 2ADUA 3I7MA 3RORA 1WY2A 5CDVA 2DFIA 5D6FA 2B3HA 2BWXA 4ZNGA 2EVMA 4RGZ1 1BN5A 4KM3A 1BOAA 4FO7A 1W2MA 2Q93A 3FMQA 3IU9A 3BIQA 2BWUA 4QR8A 4HXXA 1KQ9A 2Q92A 1XNZA 2P98A 4PV4A 3OOOA 4U6WA 1W7VA 2BWWA 4MATA 2GGCA 1WKMA 4U6EA 3S6BA 1KP0A
chains in the Genus database with same CATH topology
1O0XA 4U6ZA 1MATA 5D6EA 2OKNA 3RVAA 2OAZA 4FLLA 4IU6A 2P99A 2NQ6A 2BHDA 1R5GA 3FMRA 4IF7A 1M35A 1B6AA 1B59A 3Q6DA 1Y1NA 2GU5A 3TAVA 4ZWOA 2Q94A 4Z7MA 3CB6A 1XGSA 4R60A 4RZYA 1C22A 2GA2A 4EGEA 5JFRA 3PKDA 5CDEA 1WL6A 3MX6A 3L24A 2V3YA 2EVOA 4S01A 1KQ0A 2IW2A 1WL9A 2ZSGA 3OVKA 3IU7A 2Q95A 4U73A 5JI6A 2GU4A 2BHAA 2B3LA 2Q96A 3PKAA 3PEBA 4IKSA 1QXWA 4IPAA 5CE6A 2BH3A 2EA2A 3PKCA 5CDLA 4IECA 1A16A 4U70A 2EA4A 4FUKA 4FO8A 4JUQA 3MR1A 4OOKA 2GG3A 1YW9A 3CTZA 4IKTA 1YVMA 3FM3A 1WBQA 3IG4A 2V6CA 3MATA 2BWVA 2GG7A 2GZ5A 3IL0A 3PKBA 1QZYA 3QOCA 1C27A 1PV9A 4IKRA 5E2CA 2BHCA 2BWSA 4S00A 4S2TP 5FCFA 4FKCA 4ZWPA 2GG2A 2GG8A 1CHMA 4U6JA 2HOWA 4FLKA 3PN9A 1JAWA 5E5BA 3IU8A 2V3XA 1WN1A 2GGBA 4FLJA 2B3KA 1C24A 2G6PA 4IKUA 2NQ7A 2P9AA 4A6WA 5CIKA 5FCHA 2GG5A 1R58A 4U71A 5CLSA 4A6VA 2MATA 1N51A 3BIPA 1R5HA 3TB5A 1WLRA 2V3ZA 1C23A 1QXZA 3D27A 4PNCA 2BN7A 4U75A 4B28A 2BWYA 1QXYA 5JHUA 3BITA 1YJ3A 2GG9A 3L7GA 3O5VA 4IDYA 4U1BA 2GTXA 1XGMA 2BB7A 2Q8KA 2EVCA 4S2RP 5CNXA 4U6CA 4RZZA 4ZWUA 2GU6A 1YW7A 4U69A 1YW8A 1XGOA 2GG0A 4U76A 2BWTA 1XGNA 2GU7A 3CB5A 4FLIA 3PKEA 2BHBA 1C21A 2ADUA 3I7MA 3RORA 1WY2A 5CDVA 2DFIA 5D6FA 2B3HA 2BWXA 4ZNGA 2EVMA 4RGZ1 1BN5A 4KM3A 1BOAA 4FO7A 1W2MA 2Q93A 3FMQA 3IU9A 3BIQA 2BWUA 4QR8A 4HXXA 1KQ9A 2Q92A 1XNZA 2P98A 4PV4A 3OOOA 4U6WA 1W7VA 2BWWA 4MATA 2GGCA 1WKMA 4U6EA 3S6BA 1KP0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1O0X A;  4U6Z A;  1MAT A;  5D6E A;  2OKN A;  3RVA A;  2OAZ A;  4FLL A;  4IU6 A;  2P99 A;  2NQ6 A;  2BHD A;  1R5G A;  3FMR A;  4IF7 A;  1M35 A;  1B6A A;  1B59 A;  3Q6D A;  1Y1N A;  2GU5 A;  3TAV A;  4ZWO A;  2Q94 A;  4Z7M A;  3CB6 A;  1XGS A;  4R60 A;  4RZY A;  1C22 A;  2GA2 A;  4EGE A;  5JFR A;  3PKD A;  5CDE A;  1WL6 A;  3MX6 A;  3L24 A;  2V3Y A;  2EVO A;  4S01 A;  1KQ0 A;  2IW2 A;  1WL9 A;  2ZSG A;  3OVK A;  3IU7 A;  2Q95 A;  4U73 A;  5JI6 A;  2GU4 A;  2BHA A;  2B3L A;  2Q96 A;  3PKA A;  3PEB A;  4IKS A;  1QXW A;  4IPA A;  5CE6 A;  2BH3 A;  2EA2 A;  3PKC A;  5CDL A;  4IEC A;  1A16 A;  4U70 A;  2EA4 A;  4FUK A;  4FO8 A;  4JUQ A;  3MR1 A;  4OOK A;  2GG3 A;  1YW9 A;  3CTZ A;  4IKT A;  1YVM A;  3FM3 A;  1WBQ A;  3IG4 A;  2V6C A;  3MAT A;  2BWV A;  2GG7 A;  2GZ5 A;  3IL0 A;  3PKB A;  1QZY A;  3QOC A;  1C27 A;  1PV9 A;  4IKR A;  5E2C A;  2BHC A;  2BWS A;  4S00 A;  4S2T P;  5FCF A;  4FKC A;  4ZWP A;  2GG2 A;  2GG8 A;  1CHM A;  4U6J A;  2HOW A;  4FLK A;  3PN9 A;  1JAW A;  5E5B A;  3IU8 A;  2V3X A;  1WN1 A;  2GGB A;  4FLJ A;  2B3K A;  1C24 A;  2G6P A;  4IKU A;  2NQ7 A;  2P9A A;  4A6W A;  5CIK A;  5FCH A;  2GG5 A;  1R58 A;  4U71 A;  5CLS A;  4A6V A;  2MAT A;  1N51 A;  3BIP A;  1R5H A;  3TB5 A;  1WLR A;  2V3Z A;  1C23 A;  1QXZ A;  3D27 A;  4PNC A;  2BN7 A;  4U75 A;  4B28 A;  2BWY A;  1QXY A;  5JHU A;  3BIT A;  1YJ3 A;  2GG9 A;  3L7G A;  3O5V A;  4IDY A;  4U1B A;  2GTX A;  1XGM A;  2BB7 A;  2Q8K A;  2EVC A;  4S2R P;  5CNX A;  4U6C A;  4RZZ A;  4ZWU A;  2GU6 A;  1YW7 A;  4U69 A;  1YW8 A;  1XGO A;  2GG0 A;  4U76 A;  2BWT A;  1XGN A;  2GU7 A;  3CB5 A;  4FLI A;  3PKE A;  2BHB A;  1C21 A;  2ADU A;  3I7M A;  3ROR A;  1WY2 A;  5CDV A;  2DFI A;  5D6F A;  2B3H A;  2BWX A;  4ZNG A;  2EVM A;  4RGZ 1;  1BN5 A;  4KM3 A;  1BOA A;  4FO7 A;  1W2M A;  2Q93 A;  3FMQ A;  3IU9 A;  3BIQ A;  2BWU A;  4QR8 A;  4HXX A;  1KQ9 A;  2Q92 A;  1XNZ A;  2P98 A;  4PV4 A;  3OOO A;  4U6W A;  1W7V A;  2BWW A;  4MAT A;  2GGC A;  1WKM A;  4U6E A;  3S6B A;  1KP0 A; 
#chains in the Genus database with same CATH topology
 1O0X A;  4U6Z A;  1MAT A;  5D6E A;  2OKN A;  3RVA A;  2OAZ A;  4FLL A;  4IU6 A;  2P99 A;  2NQ6 A;  2BHD A;  1R5G A;  3FMR A;  4IF7 A;  1M35 A;  1B6A A;  1B59 A;  3Q6D A;  1Y1N A;  2GU5 A;  3TAV A;  4ZWO A;  2Q94 A;  4Z7M A;  3CB6 A;  1XGS A;  4R60 A;  4RZY A;  1C22 A;  2GA2 A;  4EGE A;  5JFR A;  3PKD A;  5CDE A;  1WL6 A;  3MX6 A;  3L24 A;  2V3Y A;  2EVO A;  4S01 A;  1KQ0 A;  2IW2 A;  1WL9 A;  2ZSG A;  3OVK A;  3IU7 A;  2Q95 A;  4U73 A;  5JI6 A;  2GU4 A;  2BHA A;  2B3L A;  2Q96 A;  3PKA A;  3PEB A;  4IKS A;  1QXW A;  4IPA A;  5CE6 A;  2BH3 A;  2EA2 A;  3PKC A;  5CDL A;  4IEC A;  1A16 A;  4U70 A;  2EA4 A;  4FUK A;  4FO8 A;  4JUQ A;  3MR1 A;  4OOK A;  2GG3 A;  1YW9 A;  3CTZ A;  4IKT A;  1YVM A;  3FM3 A;  1WBQ A;  3IG4 A;  2V6C A;  3MAT A;  2BWV A;  2GG7 A;  2GZ5 A;  3IL0 A;  3PKB A;  1QZY A;  3QOC A;  1C27 A;  1PV9 A;  4IKR A;  5E2C A;  2BHC A;  2BWS A;  4S00 A;  4S2T P;  5FCF A;  4FKC A;  4ZWP A;  2GG2 A;  2GG8 A;  1CHM A;  4U6J A;  2HOW A;  4FLK A;  3PN9 A;  1JAW A;  5E5B A;  3IU8 A;  2V3X A;  1WN1 A;  2GGB A;  4FLJ A;  2B3K A;  1C24 A;  2G6P A;  4IKU A;  2NQ7 A;  2P9A A;  4A6W A;  5CIK A;  5FCH A;  2GG5 A;  1R58 A;  4U71 A;  5CLS A;  4A6V A;  2MAT A;  1N51 A;  3BIP A;  1R5H A;  3TB5 A;  1WLR A;  2V3Z A;  1C23 A;  1QXZ A;  3D27 A;  4PNC A;  2BN7 A;  4U75 A;  4B28 A;  2BWY A;  1QXY A;  5JHU A;  3BIT A;  1YJ3 A;  2GG9 A;  3L7G A;  3O5V A;  4IDY A;  4U1B A;  2GTX A;  1XGM A;  2BB7 A;  2Q8K A;  2EVC A;  4S2R P;  5CNX A;  4U6C A;  4RZZ A;  4ZWU A;  2GU6 A;  1YW7 A;  4U69 A;  1YW8 A;  1XGO A;  2GG0 A;  4U76 A;  2BWT A;  1XGN A;  2GU7 A;  3CB5 A;  4FLI A;  3PKE A;  2BHB A;  1C21 A;  2ADU A;  3I7M A;  3ROR A;  1WY2 A;  5CDV A;  2DFI A;  5D6F A;  2B3H A;  2BWX A;  4ZNG A;  2EVM A;  4RGZ 1;  1BN5 A;  4KM3 A;  1BOA A;  4FO7 A;  1W2M A;  2Q93 A;  3FMQ A;  3IU9 A;  3BIQ A;  2BWU A;  4QR8 A;  4HXX A;  1KQ9 A;  2Q92 A;  1XNZ A;  2P98 A;  4PV4 A;  3OOO A;  4U6W A;  1W7V A;  2BWW A;  4MAT A;  2GGC A;  1WKM A;  4U6E A;  3S6B A;  1KP0 A; 
#chains in the Genus database with same CATH homology
 1O0X A;  4U6Z A;  1MAT A;  5D6E A;  2OKN A;  3RVA A;  2OAZ A;  4FLL A;  4IU6 A;  2P99 A;  2NQ6 A;  2BHD A;  1R5G A;  3FMR A;  4IF7 A;  1M35 A;  1B6A A;  1B59 A;  3Q6D A;  1Y1N A;  2GU5 A;  3TAV A;  4ZWO A;  2Q94 A;  4Z7M A;  3CB6 A;  1XGS A;  4R60 A;  4RZY A;  1C22 A;  2GA2 A;  4EGE A;  5JFR A;  3PKD A;  5CDE A;  1WL6 A;  3MX6 A;  3L24 A;  2V3Y A;  2EVO A;  4S01 A;  1KQ0 A;  2IW2 A;  1WL9 A;  2ZSG A;  3OVK A;  3IU7 A;  2Q95 A;  4U73 A;  5JI6 A;  2GU4 A;  2BHA A;  2B3L A;  2Q96 A;  3PKA A;  3PEB A;  4IKS A;  1QXW A;  4IPA A;  5CE6 A;  2BH3 A;  2EA2 A;  3PKC A;  5CDL A;  4IEC A;  1A16 A;  4U70 A;  2EA4 A;  4FUK A;  4FO8 A;  4JUQ A;  3MR1 A;  4OOK A;  2GG3 A;  1YW9 A;  3CTZ A;  4IKT A;  1YVM A;  3FM3 A;  1WBQ A;  3IG4 A;  2V6C A;  3MAT A;  2BWV A;  2GG7 A;  2GZ5 A;  3IL0 A;  3PKB A;  1QZY A;  3QOC A;  1C27 A;  1PV9 A;  4IKR A;  5E2C A;  2BHC A;  2BWS A;  4S00 A;  4S2T P;  5FCF A;  4FKC A;  4ZWP A;  2GG2 A;  2GG8 A;  1CHM A;  4U6J A;  2HOW A;  4FLK A;  3PN9 A;  1JAW A;  5E5B A;  3IU8 A;  2V3X A;  1WN1 A;  2GGB A;  4FLJ A;  2B3K A;  1C24 A;  2G6P A;  4IKU A;  2NQ7 A;  2P9A A;  4A6W A;  5CIK A;  5FCH A;  2GG5 A;  1R58 A;  4U71 A;  5CLS A;  4A6V A;  2MAT A;  1N51 A;  3BIP A;  1R5H A;  3TB5 A;  1WLR A;  2V3Z A;  1C23 A;  1QXZ A;  3D27 A;  4PNC A;  2BN7 A;  4U75 A;  4B28 A;  2BWY A;  1QXY A;  5JHU A;  3BIT A;  1YJ3 A;  2GG9 A;  3L7G A;  3O5V A;  4IDY A;  4U1B A;  2GTX A;  1XGM A;  2BB7 A;  2Q8K A;  2EVC A;  4S2R P;  5CNX A;  4U6C A;  4RZZ A;  4ZWU A;  2GU6 A;  1YW7 A;  4U69 A;  1YW8 A;  1XGO A;  2GG0 A;  4U76 A;  2BWT A;  1XGN A;  2GU7 A;  3CB5 A;  4FLI A;  3PKE A;  2BHB A;  1C21 A;  2ADU A;  3I7M A;  3ROR A;  1WY2 A;  5CDV A;  2DFI A;  5D6F A;  2B3H A;  2BWX A;  4ZNG A;  2EVM A;  4RGZ 1;  1BN5 A;  4KM3 A;  1BOA A;  4FO7 A;  1W2M A;  2Q93 A;  3FMQ A;  3IU9 A;  3BIQ A;  2BWU A;  4QR8 A;  4HXX A;  1KQ9 A;  2Q92 A;  1XNZ A;  2P98 A;  4PV4 A;  3OOO A;  4U6W A;  1W7V A;  2BWW A;  4MAT A;  2GGC A;  1WKM A;  4U6E A;  3S6B A;  1KP0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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