3CB5A

Crystal structure of the s. pombe peptidase homology domain of fact complex subunit spt16 (form a)
Total Genus 150
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
150
sequence length
444
structure length
444
Chain Sequence
b'GAMAEYEIDEITFHKRLGILLTSWKNEEDGKTLFQDCDSILVTVGAHDDTNPYQKSTALHTWLLGYEFPSTLILLEKHRITILTSVNKANMLTKLAETKGAAADVNILKRTKDAEENKKLFEKIIEYIRATNKKVGVFPKDKTQGKFINEWDSIFEPVKSEFNLVDASLGLAKCLAIKDEQELANIKGASRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQMESLIDNEAFFQTKSLKLGDIDLDQLEWCYTPIIQSGGSYDLKPSAITDDRNLHGDVVLCSLGFRYKSYCSNVGRTYLFDPDSEQQKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIRAKRPDLEPNFVRNLGAGIGIEFRESSLLVNAKNPRVLQAGMTLNLSIGFGNLINPHPKNSQSKEYALLLIDTIQITRSDPIVFTDSPKAQGDISYFFGED'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords FACT complex subunit spt16
publication title The FACT Spt16 "peptidase" domain is a histone H3-H4 binding module
pubmed doi rcsb
source organism Schizosaccharomyces pombe
molecule tags Transcription
total genus 150
structure length 444
sequence length 444
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-02-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF14826 FACT-Spt16_Nlob FACT complex subunit SPT16 N-terminal lobe domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 3cb5A01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 3cb5A02
1QXZA 2V3XA 2BHDA 2OKNA 3BITA 4U71A 2BN7A 2Q92A 1KQ9A 2BH3A 1M35A 3BIPA 1QZYA 2BHAA 1YVMA 3OOOA 4S01A 4Z7MA 2BHBA 3IL0A 5CNXA 3IG4A 2EVMA 3MR1A 4R60A 3CTZA 2GG5A 4IDYA 3Q6DA 4A6WA 4S2RP 2EVOA 3RORA 1WL9A 2V6CA 4FLLA 3L7GA 3FMRA 5FCHA 1B6AA 4U6CA 2IW2A 4HXXA 3PEBA 2GU6A 5CDEA 4FLJA 3PKBA 1XGNA 4ZWPA 1XGOA 1WL6A 4S00A 2BWVA 4U6WA 2OAZA 1C21A 2GG3A 4FLIA 2Q95A 4PNCA 2BWUA 4S2TP 5CDLA 3MATA 5D6FA 3CB5A 4OOKA 3TAVA 4IF7A 2P98A 4RGZ1 2GG7A 4FO8A 2HOWA 1Y1NA 2NQ7A 1CHMA 1XNZA 1WN1A 3FM3A 2GU5A 3IU7A 3PKCA 4RZZA 3IU8A 4IKSA 2GG2A 1BOAA 4IU6A 1W7VA 4KM3A 4ZWOA 5CIKA 2BWWA 2GTXA 3BIQA 4RZYA 2B3HA 2Q94A 4IKRA 4ZWUA 1R5GA 1MATA 1A16A 5CDVA 3RVAA 1WY2A 4MATA 4IPAA 5JFRA 2GA2A 1BN5A 4U76A 1WBQA 1KQ0A 3OVKA 2BHCA 2GG8A 1O0XA 3O5VA 4U69A 2EA4A 2NQ6A 3I7MA 5CLSA 4IKTA 3TB5A 4FUKA 2MATA 2BWYA 4FKCA 4PV4A 3L24A 1YW8A 2V3ZA 4U73A 2B3LA 1YW7A 2G6PA 1C22A 3IU9A 3PKAA 4IECA 3D27A 2BWTA 3CB6A 2Q8KA 2EA2A 1C23A 3PKDA 3PKEA 5D6EA 2GGCA 2B3KA 5CE6A 3MX6A 1C27A 5JHUA 2Q93A 1KP0A 2GG0A 5FCFA 1QXYA 2BB7A 2GU4A 1W2MA 1PV9A 2GG9A 4QR8A 1YJ3A 3S6BA 4U6EA 2EVCA 4FO7A 4IKUA 1JAWA 3PN9A 1R58A 2ADUA 1B59A 2Q96A 2ZSGA 2GU7A 5E5BA 2GGBA 1WKMA 4ZNGA 1XGMA 2P9AA 1N51A 2DFIA 4U6ZA 4FLKA 1C24A 4EGEA 5JI6A 1XGSA 2P99A 3FMQA 4U70A 2V3YA 5E2CA 1QXWA 4U6JA 3QOCA 1R5HA 4JUQA 2BWXA 2GZ5A 4U1BA 2BWSA 4A6VA 1WLRA 4B28A 1YW9A 4U75A
chains in the Genus database with same CATH superfamily
1QXZA 2V3XA 2BHDA 2OKNA 3BITA 4U71A 2BN7A 2Q92A 1KQ9A 2BH3A 1M35A 3BIPA 1QZYA 2BHAA 1YVMA 3OOOA 4S01A 4Z7MA 2BHBA 3IL0A 5CNXA 3IG4A 2EVMA 3MR1A 4R60A 3CTZA 2GG5A 4IDYA 3Q6DA 4A6WA 4S2RP 2EVOA 3RORA 1WL9A 2V6CA 4FLLA 3L7GA 3FMRA 5FCHA 1B6AA 4U6CA 2IW2A 4HXXA 3PEBA 2GU6A 5CDEA 4FLJA 3PKBA 1XGNA 4ZWPA 1XGOA 1WL6A 4S00A 2BWVA 4U6WA 2OAZA 1C21A 2GG3A 4FLIA 2Q95A 4PNCA 2BWUA 4S2TP 5CDLA 3MATA 5D6FA 3CB5A 4OOKA 3TAVA 4IF7A 2P98A 4RGZ1 2GG7A 4FO8A 2HOWA 1Y1NA 2NQ7A 1CHMA 1XNZA 1WN1A 3FM3A 2GU5A 3IU7A 3PKCA 4RZZA 3IU8A 4IKSA 2GG2A 1BOAA 4IU6A 1W7VA 4KM3A 4ZWOA 5CIKA 2BWWA 2GTXA 3BIQA 4RZYA 2B3HA 2Q94A 4IKRA 4ZWUA 1R5GA 1MATA 1A16A 5CDVA 3RVAA 1WY2A 4MATA 4IPAA 5JFRA 2GA2A 1BN5A 4U76A 1WBQA 1KQ0A 3OVKA 2BHCA 2GG8A 1O0XA 3O5VA 4U69A 2EA4A 2NQ6A 3I7MA 5CLSA 4IKTA 3TB5A 4FUKA 2MATA 2BWYA 4FKCA 4PV4A 3L24A 1YW8A 2V3ZA 4U73A 2B3LA 1YW7A 2G6PA 1C22A 3IU9A 3PKAA 4IECA 3D27A 2BWTA 3CB6A 2Q8KA 2EA2A 1C23A 3PKDA 3PKEA 5D6EA 2GGCA 2B3KA 5CE6A 3MX6A 1C27A 5JHUA 2Q93A 1KP0A 2GG0A 5FCFA 1QXYA 2BB7A 2GU4A 1W2MA 1PV9A 2GG9A 4QR8A 1YJ3A 3S6BA 4U6EA 2EVCA 4FO7A 4IKUA 1JAWA 3PN9A 1R58A 2ADUA 1B59A 2Q96A 2ZSGA 2GU7A 5E5BA 2GGBA 1WKMA 4ZNGA 1XGMA 2P9AA 1N51A 2DFIA 4U6ZA 4FLKA 1C24A 4EGEA 5JI6A 1XGSA 2P99A 3FMQA 4U70A 2V3YA 5E2CA 1QXWA 4U6JA 3QOCA 1R5HA 4JUQA 2BWXA 2GZ5A 4U1BA 2BWSA 4A6VA 1WLRA 4B28A 1YW9A 4U75A
chains in the Genus database with same CATH topology
1QXZA 2V3XA 2BHDA 2OKNA 3BITA 4U71A 2BN7A 2Q92A 1KQ9A 2BH3A 1M35A 3BIPA 1QZYA 2BHAA 1YVMA 3OOOA 4S01A 4Z7MA 2BHBA 3IL0A 5CNXA 3IG4A 2EVMA 3MR1A 4R60A 3CTZA 2GG5A 4IDYA 3Q6DA 4A6WA 4S2RP 2EVOA 3RORA 1WL9A 2V6CA 4FLLA 3L7GA 3FMRA 5FCHA 1B6AA 4U6CA 2IW2A 4HXXA 3PEBA 2GU6A 5CDEA 4FLJA 3PKBA 1XGNA 4ZWPA 1XGOA 1WL6A 4S00A 2BWVA 4U6WA 2OAZA 1C21A 2GG3A 4FLIA 2Q95A 4PNCA 2BWUA 4S2TP 5CDLA 3MATA 5D6FA 3CB5A 4OOKA 3TAVA 4IF7A 2P98A 4RGZ1 2GG7A 4FO8A 2HOWA 1Y1NA 2NQ7A 1CHMA 1XNZA 1WN1A 3FM3A 2GU5A 3IU7A 3PKCA 4RZZA 3IU8A 4IKSA 2GG2A 1BOAA 4IU6A 1W7VA 4KM3A 4ZWOA 5CIKA 2BWWA 2GTXA 3BIQA 4RZYA 2B3HA 2Q94A 4IKRA 4ZWUA 1R5GA 1MATA 1A16A 5CDVA 3RVAA 1WY2A 4MATA 4IPAA 5JFRA 2GA2A 1BN5A 4U76A 1WBQA 1KQ0A 3OVKA 2BHCA 2GG8A 1O0XA 3O5VA 4U69A 2EA4A 2NQ6A 3I7MA 5CLSA 4IKTA 3TB5A 4FUKA 2MATA 2BWYA 4FKCA 4PV4A 3L24A 1YW8A 2V3ZA 4U73A 2B3LA 1YW7A 2G6PA 1C22A 3IU9A 3PKAA 4IECA 3D27A 2BWTA 3CB6A 2Q8KA 2EA2A 1C23A 3PKDA 3PKEA 5D6EA 2GGCA 2B3KA 5CE6A 3MX6A 1C27A 5JHUA 2Q93A 1KP0A 2GG0A 5FCFA 1QXYA 2BB7A 2GU4A 1W2MA 1PV9A 2GG9A 4QR8A 1YJ3A 3S6BA 4U6EA 2EVCA 4FO7A 4IKUA 1JAWA 3PN9A 1R58A 2ADUA 1B59A 2Q96A 2ZSGA 2GU7A 5E5BA 2GGBA 1WKMA 4ZNGA 1XGMA 2P9AA 1N51A 2DFIA 4U6ZA 4FLKA 1C24A 4EGEA 5JI6A 1XGSA 2P99A 3FMQA 4U70A 2V3YA 5E2CA 1QXWA 4U6JA 3QOCA 1R5HA 4JUQA 2BWXA 2GZ5A 4U1BA 2BWSA 4A6VA 1WLRA 4B28A 1YW9A 4U75A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QXZ A;  2V3X A;  2BHD A;  2OKN A;  3BIT A;  4U71 A;  2BN7 A;  2Q92 A;  1KQ9 A;  2BH3 A;  1M35 A;  3BIP A;  1QZY A;  2BHA A;  1YVM A;  3OOO A;  4S01 A;  4Z7M A;  2BHB A;  3IL0 A;  5CNX A;  3IG4 A;  2EVM A;  3MR1 A;  4R60 A;  3CTZ A;  2GG5 A;  4IDY A;  3Q6D A;  4A6W A;  4S2R P;  2EVO A;  3ROR A;  1WL9 A;  2V6C A;  4FLL A;  3L7G A;  3FMR A;  5FCH A;  1B6A A;  4U6C A;  2IW2 A;  4HXX A;  3PEB A;  2GU6 A;  5CDE A;  4FLJ A;  3PKB A;  1XGN A;  4ZWP A;  1XGO A;  1WL6 A;  4S00 A;  2BWV A;  4U6W A;  2OAZ A;  1C21 A;  2GG3 A;  4FLI A;  2Q95 A;  4PNC A;  2BWU A;  4S2T P;  5CDL A;  3MAT A;  5D6F A;  3CB5 A;  4OOK A;  3TAV A;  4IF7 A;  2P98 A;  4RGZ 1;  2GG7 A;  4FO8 A;  2HOW A;  1Y1N A;  2NQ7 A;  1CHM A;  1XNZ A;  1WN1 A;  3FM3 A;  2GU5 A;  3IU7 A;  3PKC A;  4RZZ A;  3IU8 A;  4IKS A;  2GG2 A;  1BOA A;  4IU6 A;  1W7V A;  4KM3 A;  4ZWO A;  5CIK A;  2BWW A;  2GTX A;  3BIQ A;  4RZY A;  2B3H A;  2Q94 A;  4IKR A;  4ZWU A;  1R5G A;  1MAT A;  1A16 A;  5CDV A;  3RVA A;  1WY2 A;  4MAT A;  4IPA A;  5JFR A;  2GA2 A;  1BN5 A;  4U76 A;  1WBQ A;  1KQ0 A;  3OVK A;  2BHC A;  2GG8 A;  1O0X A;  3O5V A;  4U69 A;  2EA4 A;  2NQ6 A;  3I7M A;  5CLS A;  4IKT A;  3TB5 A;  4FUK A;  2MAT A;  2BWY A;  4FKC A;  4PV4 A;  3L24 A;  1YW8 A;  2V3Z A;  4U73 A;  2B3L A;  1YW7 A;  2G6P A;  1C22 A;  3IU9 A;  3PKA A;  4IEC A;  3D27 A;  2BWT A;  3CB6 A;  2Q8K A;  2EA2 A;  1C23 A;  3PKD A;  3PKE A;  5D6E A;  2GGC A;  2B3K A;  5CE6 A;  3MX6 A;  1C27 A;  5JHU A;  2Q93 A;  1KP0 A;  2GG0 A;  5FCF A;  1QXY A;  2BB7 A;  2GU4 A;  1W2M A;  1PV9 A;  2GG9 A;  4QR8 A;  1YJ3 A;  3S6B A;  4U6E A;  2EVC A;  4FO7 A;  4IKU A;  1JAW A;  3PN9 A;  1R58 A;  2ADU A;  1B59 A;  2Q96 A;  2ZSG A;  2GU7 A;  5E5B A;  2GGB A;  1WKM A;  4ZNG A;  1XGM A;  2P9A A;  1N51 A;  2DFI A;  4U6Z A;  4FLK A;  1C24 A;  4EGE A;  5JI6 A;  1XGS A;  2P99 A;  3FMQ A;  4U70 A;  2V3Y A;  5E2C A;  1QXW A;  4U6J A;  3QOC A;  1R5H A;  4JUQ A;  2BWX A;  2GZ5 A;  4U1B A;  2BWS A;  4A6V A;  1WLR A;  4B28 A;  1YW9 A;  4U75 A; 
#chains in the Genus database with same CATH topology
 1QXZ A;  2V3X A;  2BHD A;  2OKN A;  3BIT A;  4U71 A;  2BN7 A;  2Q92 A;  1KQ9 A;  2BH3 A;  1M35 A;  3BIP A;  1QZY A;  2BHA A;  1YVM A;  3OOO A;  4S01 A;  4Z7M A;  2BHB A;  3IL0 A;  5CNX A;  3IG4 A;  2EVM A;  3MR1 A;  4R60 A;  3CTZ A;  2GG5 A;  4IDY A;  3Q6D A;  4A6W A;  4S2R P;  2EVO A;  3ROR A;  1WL9 A;  2V6C A;  4FLL A;  3L7G A;  3FMR A;  5FCH A;  1B6A A;  4U6C A;  2IW2 A;  4HXX A;  3PEB A;  2GU6 A;  5CDE A;  4FLJ A;  3PKB A;  1XGN A;  4ZWP A;  1XGO A;  1WL6 A;  4S00 A;  2BWV A;  4U6W A;  2OAZ A;  1C21 A;  2GG3 A;  4FLI A;  2Q95 A;  4PNC A;  2BWU A;  4S2T P;  5CDL A;  3MAT A;  5D6F A;  3CB5 A;  4OOK A;  3TAV A;  4IF7 A;  2P98 A;  4RGZ 1;  2GG7 A;  4FO8 A;  2HOW A;  1Y1N A;  2NQ7 A;  1CHM A;  1XNZ A;  1WN1 A;  3FM3 A;  2GU5 A;  3IU7 A;  3PKC A;  4RZZ A;  3IU8 A;  4IKS A;  2GG2 A;  1BOA A;  4IU6 A;  1W7V A;  4KM3 A;  4ZWO A;  5CIK A;  2BWW A;  2GTX A;  3BIQ A;  4RZY A;  2B3H A;  2Q94 A;  4IKR A;  4ZWU A;  1R5G A;  1MAT A;  1A16 A;  5CDV A;  3RVA A;  1WY2 A;  4MAT A;  4IPA A;  5JFR A;  2GA2 A;  1BN5 A;  4U76 A;  1WBQ A;  1KQ0 A;  3OVK A;  2BHC A;  2GG8 A;  1O0X A;  3O5V A;  4U69 A;  2EA4 A;  2NQ6 A;  3I7M A;  5CLS A;  4IKT A;  3TB5 A;  4FUK A;  2MAT A;  2BWY A;  4FKC A;  4PV4 A;  3L24 A;  1YW8 A;  2V3Z A;  4U73 A;  2B3L A;  1YW7 A;  2G6P A;  1C22 A;  3IU9 A;  3PKA A;  4IEC A;  3D27 A;  2BWT A;  3CB6 A;  2Q8K A;  2EA2 A;  1C23 A;  3PKD A;  3PKE A;  5D6E A;  2GGC A;  2B3K A;  5CE6 A;  3MX6 A;  1C27 A;  5JHU A;  2Q93 A;  1KP0 A;  2GG0 A;  5FCF A;  1QXY A;  2BB7 A;  2GU4 A;  1W2M A;  1PV9 A;  2GG9 A;  4QR8 A;  1YJ3 A;  3S6B A;  4U6E A;  2EVC A;  4FO7 A;  4IKU A;  1JAW A;  3PN9 A;  1R58 A;  2ADU A;  1B59 A;  2Q96 A;  2ZSG A;  2GU7 A;  5E5B A;  2GGB A;  1WKM A;  4ZNG A;  1XGM A;  2P9A A;  1N51 A;  2DFI A;  4U6Z A;  4FLK A;  1C24 A;  4EGE A;  5JI6 A;  1XGS A;  2P99 A;  3FMQ A;  4U70 A;  2V3Y A;  5E2C A;  1QXW A;  4U6J A;  3QOC A;  1R5H A;  4JUQ A;  2BWX A;  2GZ5 A;  4U1B A;  2BWS A;  4A6V A;  1WLR A;  4B28 A;  1YW9 A;  4U75 A; 
#chains in the Genus database with same CATH homology
 1QXZ A;  2V3X A;  2BHD A;  2OKN A;  3BIT A;  4U71 A;  2BN7 A;  2Q92 A;  1KQ9 A;  2BH3 A;  1M35 A;  3BIP A;  1QZY A;  2BHA A;  1YVM A;  3OOO A;  4S01 A;  4Z7M A;  2BHB A;  3IL0 A;  5CNX A;  3IG4 A;  2EVM A;  3MR1 A;  4R60 A;  3CTZ A;  2GG5 A;  4IDY A;  3Q6D A;  4A6W A;  4S2R P;  2EVO A;  3ROR A;  1WL9 A;  2V6C A;  4FLL A;  3L7G A;  3FMR A;  5FCH A;  1B6A A;  4U6C A;  2IW2 A;  4HXX A;  3PEB A;  2GU6 A;  5CDE A;  4FLJ A;  3PKB A;  1XGN A;  4ZWP A;  1XGO A;  1WL6 A;  4S00 A;  2BWV A;  4U6W A;  2OAZ A;  1C21 A;  2GG3 A;  4FLI A;  2Q95 A;  4PNC A;  2BWU A;  4S2T P;  5CDL A;  3MAT A;  5D6F A;  3CB5 A;  4OOK A;  3TAV A;  4IF7 A;  2P98 A;  4RGZ 1;  2GG7 A;  4FO8 A;  2HOW A;  1Y1N A;  2NQ7 A;  1CHM A;  1XNZ A;  1WN1 A;  3FM3 A;  2GU5 A;  3IU7 A;  3PKC A;  4RZZ A;  3IU8 A;  4IKS A;  2GG2 A;  1BOA A;  4IU6 A;  1W7V A;  4KM3 A;  4ZWO A;  5CIK A;  2BWW A;  2GTX A;  3BIQ A;  4RZY A;  2B3H A;  2Q94 A;  4IKR A;  4ZWU A;  1R5G A;  1MAT A;  1A16 A;  5CDV A;  3RVA A;  1WY2 A;  4MAT A;  4IPA A;  5JFR A;  2GA2 A;  1BN5 A;  4U76 A;  1WBQ A;  1KQ0 A;  3OVK A;  2BHC A;  2GG8 A;  1O0X A;  3O5V A;  4U69 A;  2EA4 A;  2NQ6 A;  3I7M A;  5CLS A;  4IKT A;  3TB5 A;  4FUK A;  2MAT A;  2BWY A;  4FKC A;  4PV4 A;  3L24 A;  1YW8 A;  2V3Z A;  4U73 A;  2B3L A;  1YW7 A;  2G6P A;  1C22 A;  3IU9 A;  3PKA A;  4IEC A;  3D27 A;  2BWT A;  3CB6 A;  2Q8K A;  2EA2 A;  1C23 A;  3PKD A;  3PKE A;  5D6E A;  2GGC A;  2B3K A;  5CE6 A;  3MX6 A;  1C27 A;  5JHU A;  2Q93 A;  1KP0 A;  2GG0 A;  5FCF A;  1QXY A;  2BB7 A;  2GU4 A;  1W2M A;  1PV9 A;  2GG9 A;  4QR8 A;  1YJ3 A;  3S6B A;  4U6E A;  2EVC A;  4FO7 A;  4IKU A;  1JAW A;  3PN9 A;  1R58 A;  2ADU A;  1B59 A;  2Q96 A;  2ZSG A;  2GU7 A;  5E5B A;  2GGB A;  1WKM A;  4ZNG A;  1XGM A;  2P9A A;  1N51 A;  2DFI A;  4U6Z A;  4FLK A;  1C24 A;  4EGE A;  5JI6 A;  1XGS A;  2P99 A;  3FMQ A;  4U70 A;  2V3Y A;  5E2C A;  1QXW A;  4U6J A;  3QOC A;  1R5H A;  4JUQ A;  2BWX A;  2GZ5 A;  4U1B A;  2BWS A;  4A6V A;  1WLR A;  4B28 A;  1YW9 A;  4U75 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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