3CC2E

The refined crystal structure of the haloarcula marismortui large ribosomal subunit at 2.4 angstrom resolution with rrna sequence for the 23s rrna and genome-derived sequences for r-proteins
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
172
structure length
172
Chain Sequence
PRVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDGEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 50S ribosomal protein L2P
publication title Mutations outside the anisomycin-binding site can make ribosomes drug-resistant.
pubmed doi rcsb
total genus 38
structure length 172
sequence length 172
ec nomenclature
pdb deposition date 2008-02-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF00347 Ribosomal_L6 Ribosomal protein L6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 3cc2E02
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 3cc2E01
1W2BE 1M90G 1NJIG 3CCSE 3OW2E 2ZJQE 3CC4E 1K8AG 1K9MG 1QVGE 1YHQE 5GADG 3CCQE 3CC7E 3CCRE 1YJ9E 4WFNE 3CXCE 5MLCH 3I56E 3G4SE 4WFBE 3G71E 3CCME 4UY8G 2QEXE 1M1KG 3CD6E 2ZJPE 2ZJRE 5JVHE 1S72E 3CCVE 4U67E 1YIJE 5HL7E 4WF9E 3CMEE 4WCEE 1VQ4E 4WFAE 1Q82G 1KC8G 5DM6E 1RL6A 3CCEE 3CCLE 2QA4E 2OTJE 3CMAE 1VQOE 1VQME 1VQ7E 3PIPE 5GAHG 3CPWE 3PIOE 1VQNE 3DLLE 2CQLA 1VQ6E 4IO9E 1JJ2E 5GAGG 1KQSE 1Q81G 1VQ5E 3CF5E 1VQKE 1VQ8E 1Q86G 1KD1G 5AN9B 5H1SI 5GAEG 3J7ZG 1QVFE 1YJWE 3CC2E 1VQPE 3G6EE 2OTLE 1VQLE 1VQ9E 1Q7YG 3CCUE 1YI2E 1YITE 5DM7E 1YJNE 5JVGE 4IOCE 1N8RG 4IOAE 1K73G 3CCJE 3I55E
chains in the Genus database with same CATH superfamily
1W2BE 1M90G 1NJIG 3CCSE 3OW2E 2ZJQE 3CC4E 1K8AG 1K9MG 1QVGE 1YHQE 5GADG 2PI3O 3CCQE 3CC7E 3CCRE 1YJ9E 4WFNE 5B10O 3CXCE 5MLCH 3I56E 3G4SE 4WFBE 1RJLC 3G71E 3CCME 4UY8G 2QEXE 1M1KG 3CD6E 3CKFA 2OY5O 2ZJPE 2HKDA 2ZJRE 5JVHE 2AF5A 1S72E 3CCVE 4U67E 1YIJE 5HL7E 2OY1O 3CMEE 4WCEE 1VQ4E 4WF9E 1OSPO 4WFAE 1Q82G 5B11O 2OY8A 1KC8G 3IG9A 5DM6E 1RL6A 3CCEE 1FJ1E 3CCLE 2QA4E 2OTJE 3CMAE 2FKJA 2G8CO 1VQME 1VQOE 1VQ7E 3PIPE 5GAHG 3EC5A 3CPWE 3PIOE 3AUMO 3DLLE 1VQNE 2CQLA 1VQ6E 2OYBO 4IO9E 1JJ2E 2OL8O 5GAGG 1KQSE 1Q81G 2OL7A 3CF5E 1VQ5E 2FKGA 1VQKE 2I5VO 1Q86G 1VQ8E 1KD1G 3CKGA 5H1SI 5AN9B 5GAEG 3J7ZG 1QVFE 1YJWE 3CC2E 1VQPE 3G6EE 2OTLE 2I5ZO 3IGEA 5B2AO 1VQLE 1VQ9E 2OL6O 1Q7YG 1P4PA 5B3MO 3CCUE 1YI2E 1YITE 5DM7E 1YJNE 5JVGE 4IOCE 2OY7A 1N8RG 4IOAE 1K73G 3CCJE 3I55E
chains in the Genus database with same CATH topology
1W2BE 1M90G 1NJIG 3CCSE 3OW2E 2ZJQE 3CC4E 1K8AG 1K9MG 1QVGE 1YHQE 5GADG 3CCQE 3CC7E 3CCRE 1YJ9E 4WFNE 3CXCE 5MLCH 3I56E 3G4SE 4WFBE 3G71E 3CCME 4UY8G 2QEXE 1M1KG 3CD6E 2ZJPE 2ZJRE 5JVHE 1S72E 3CCVE 4U67E 1YIJE 5HL7E 4WF9E 3CMEE 4WCEE 1VQ4E 4WFAE 1Q82G 1KC8G 5DM6E 1RL6A 3CCEE 3CCLE 2QA4E 2OTJE 3CMAE 1VQOE 1VQME 1VQ7E 3PIPE 5GAHG 3CPWE 3PIOE 1VQNE 3DLLE 2CQLA 1VQ6E 4IO9E 1JJ2E 5GAGG 1KQSE 1Q81G 1VQ5E 3CF5E 1VQKE 1VQ8E 1Q86G 1KD1G 5AN9B 5H1SI 5GAEG 3J7ZG 1QVFE 1YJWE 3CC2E 1VQPE 3G6EE 2OTLE 1VQLE 1VQ9E 1Q7YG 3CCUE 1YI2E 1YITE 5DM7E 1YJNE 5JVGE 4IOCE 1N8RG 4IOAE 1K73G 3CCJE 3I55E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1W2B E;  1M90 G;  1NJI G;  3CCS E;  3OW2 E;  2ZJQ E;  3CC4 E;  1K8A G;  1K9M G;  1QVG E;  1YHQ E;  5GAD G;  3CCQ E;  3CC7 E;  3CCR E;  1YJ9 E;  4WFN E;  3CXC E;  5MLC H;  3I56 E;  3G4S E;  4WFB E;  3G71 E;  3CCM E;  4UY8 G;  2QEX E;  1M1K G;  3CD6 E;  2ZJP E;  2ZJR E;  5JVH E;  1S72 E;  3CCV E;  4U67 E;  1YIJ E;  5HL7 E;  4WF9 E;  3CME E;  4WCE E;  1VQ4 E;  4WFA E;  1Q82 G;  1KC8 G;  5DM6 E;  1RL6 A;  3CCE E;  3CCL E;  2QA4 E;  2OTJ E;  3CMA E;  1VQO E;  1VQM E;  1VQ7 E;  3PIP E;  5GAH G;  3CPW E;  3PIO E;  1VQN E;  3DLL E;  2CQL A;  1VQ6 E;  4IO9 E;  1JJ2 E;  5GAG G;  1KQS E;  1Q81 G;  1VQ5 E;  3CF5 E;  1VQK E;  1VQ8 E;  1Q86 G;  1KD1 G;  5AN9 B;  5H1S I;  5GAE G;  3J7Z G;  1QVF E;  1YJW E;  3CC2 E;  1VQP E;  3G6E E;  2OTL E;  1VQL E;  1VQ9 E;  1Q7Y G;  3CCU E;  1YI2 E;  1YIT E;  5DM7 E;  1YJN E;  5JVG E;  4IOC E;  1N8R G;  4IOA E;  1K73 G;  3CCJ E;  3I55 E; 
#chains in the Genus database with same CATH topology
 1W2B E;  1M90 G;  1NJI G;  3CCS E;  3OW2 E;  2ZJQ E;  3CC4 E;  1K8A G;  1K9M G;  1QVG E;  1YHQ E;  5GAD G;  2PI3 O;  3CCQ E;  3CC7 E;  3CCR E;  1YJ9 E;  4WFN E;  5B10 O;  3CXC E;  5MLC H;  3I56 E;  3G4S E;  4WFB E;  1RJL C;  3G71 E;  3CCM E;  4UY8 G;  2QEX E;  1M1K G;  3CD6 E;  3CKF A;  2OY5 O;  2ZJP E;  2HKD A;  2ZJR E;  5JVH E;  2AF5 A;  1S72 E;  3CCV E;  4U67 E;  1YIJ E;  5HL7 E;  2OY1 O;  3CME E;  4WCE E;  1VQ4 E;  4WF9 E;  1OSP O;  4WFA E;  1Q82 G;  5B11 O;  2OY8 A;  1KC8 G;  3IG9 A;  5DM6 E;  1RL6 A;  3CCE E;  1FJ1 E;  3CCL E;  2QA4 E;  2OTJ E;  3CMA E;  2FKJ A;  2G8C O;  1VQM E;  1VQO E;  1VQ7 E;  3PIP E;  5GAH G;  3EC5 A;  3CPW E;  3PIO E;  3AUM O;  3DLL E;  1VQN E;  2CQL A;  1VQ6 E;  2OYB O;  4IO9 E;  1JJ2 E;  2OL8 O;  5GAG G;  1KQS E;  1Q81 G;  2OL7 A;  3CF5 E;  1VQ5 E;  2FKG A;  1VQK E;  2I5V O;  1Q86 G;  1VQ8 E;  1KD1 G;  3CKG A;  5H1S I;  5AN9 B;  5GAE G;  3J7Z G;  1QVF E;  1YJW E;  3CC2 E;  1VQP E;  3G6E E;  2OTL E;  2I5Z O;  3IGE A;  5B2A O;  1VQL E;  1VQ9 E;  2OL6 O;  1Q7Y G;  1P4P A;  5B3M O;  3CCU E;  1YI2 E;  1YIT E;  5DM7 E;  1YJN E;  5JVG E;  4IOC E;  2OY7 A;  1N8R G;  4IOA E;  1K73 G;  3CCJ E;  3I55 E; 
#chains in the Genus database with same CATH homology
 1W2B E;  1M90 G;  1NJI G;  3CCS E;  3OW2 E;  2ZJQ E;  3CC4 E;  1K8A G;  1K9M G;  1QVG E;  1YHQ E;  5GAD G;  3CCQ E;  3CC7 E;  3CCR E;  1YJ9 E;  4WFN E;  3CXC E;  5MLC H;  3I56 E;  3G4S E;  4WFB E;  3G71 E;  3CCM E;  4UY8 G;  2QEX E;  1M1K G;  3CD6 E;  2ZJP E;  2ZJR E;  5JVH E;  1S72 E;  3CCV E;  4U67 E;  1YIJ E;  5HL7 E;  4WF9 E;  3CME E;  4WCE E;  1VQ4 E;  4WFA E;  1Q82 G;  1KC8 G;  5DM6 E;  1RL6 A;  3CCE E;  3CCL E;  2QA4 E;  2OTJ E;  3CMA E;  1VQO E;  1VQM E;  1VQ7 E;  3PIP E;  5GAH G;  3CPW E;  3PIO E;  1VQN E;  3DLL E;  2CQL A;  1VQ6 E;  4IO9 E;  1JJ2 E;  5GAG G;  1KQS E;  1Q81 G;  1VQ5 E;  3CF5 E;  1VQK E;  1VQ8 E;  1Q86 G;  1KD1 G;  5AN9 B;  5H1S I;  5GAE G;  3J7Z G;  1QVF E;  1YJW E;  3CC2 E;  1VQP E;  3G6E E;  2OTL E;  1VQL E;  1VQ9 E;  1Q7Y G;  3CCU E;  1YI2 E;  1YIT E;  5DM7 E;  1YJN E;  5JVG E;  4IOC E;  1N8R G;  4IOA E;  1K73 G;  3CCJ E;  3I55 E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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