3CC2H

The refined crystal structure of the haloarcula marismortui large ribosomal subunit at 2.4 angstrom resolution with rrna sequence for the 23s rrna and genome-derived sequences for r-proteins
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
171
structure length
160
Chain Sequence
KPASMYRDIDKPAYTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIKVERGEEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 50S ribosomal protein L2P
publication title Mutations outside the anisomycin-binding site can make ribosomes drug-resistant.
pubmed doi rcsb
total genus 41
structure length 160
sequence length 171
ec nomenclature
pdb deposition date 2008-02-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
H PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 3cc2H00
1K8AJ 1QVFH 5DM6J 1YHQH 1JJ2H 4U67J 1KC8J 5HL7J 1K9MJ 3J7ZM 3PIPJ 1VQNH 4IOCJ 1M90J 3G71H 1QVGH 3CCQH 5JVHJ 1VQ9H 5GAGN 4IO9J 3PIOJ 1K73J 1WKIA 1VQ6H 3CC4H 4WFBJ 1VQOH 1VQLH 2ZJQJ 1NJIJ 1Y69K 1KD1J 4WCEJ 3CC7H 1VQ7H 1Q86J 5DM7J 3CXCH 4WF9J 4IOAJ 5GADN 5AN9F 3CMAH 1S72H 1YJNH 3CD6H 4WFAJ 3CF5J 1YI2H 1YJ9H 5MLCO 1Q81J 2QEXH 1KQSH 3CCJH 3DLLJ 1Q7YJ 1M1KJ 5GAHN 2OTLH 3CCEH 1YIJH 1VQ5H 1VQ4H 5H1SO 3CMEH 2ZJPJ 3G6EH 1YITH 4WFNJ 3OW2H 2OTJH 1VQKH 2ZJRJ 1VQ8H 3CCSH 4UY8M 3CCUH 3CC2H 1VQMH 3G4SH 2QA4H 3CCLH 1N8RJ 3CPWH 1Q82J 3I55H 3CCMH 3CCRH 3CCVH 2PA2A 5GAEN 5JVGJ 1YJWH 1VQPH 3I56H 1W2BH
chains in the Genus database with same CATH superfamily
3BIIE 3C2FA 3AN1A 1K8AJ 3WO1A 1BRWA 2WK6A 4YEKA 1QVFH 1NVJA 3NVWC 5DM6J 4US8A 1YHQH 1JJ2H 4U67J 1YTEA 1SB3A 1KC8J 5HL7J 1K9MJ 3J7ZM 1JROB 3GNNA 5AYYA 3PIPJ 1VQNH 1FFVB 1FMAE 4IOCJ 3VMMA 2OMDA 1N63B 1M90J 3G71H 1AZYA 1QVGH 3CCQH 1FFUB 5JVHJ 1VQ9H 2Q5WE 3NVVC 5GAGN 4IO9J 3FC4A 3PIOJ 1K73J 1WKIA 4EAFA 1VQ6H 2TPTA 4YYYA 3NRZC 4XR5A 1N5WB 3NS1C 3CC4H 3C2RA 1YTDA 3SR6C 4WFBJ 1FM0E 5EP8A 1RM6A 1OTPA 1N5XA 1VQOH 1VQLH 3EUB4 1N61B 2JBMA 3PAJA 1QPNA 2ZJQJ 1NJIJ 3NVYC 3AM9A 1YTKA 1Y69K 2I14A 1N62B 3H5QA 1KD1J 4WCEJ 2W54B 1VQ7H 3CC7H 3WNZA 5AYZA 1Q86J 1QPQA 4GA6A 2W3RB 5DM7J 3CXCH 4X46A 4WF9J 4IOAJ 5GADN 5AN9F 3CMAH 2W3SB 3C2VA 1S72H 1YJNH 3CD6H 4KWWA 4C7YA 4EADA 2QIEA 3C2OA 4WFAJ 1N60B 3CF5J 1YI2H 4LHMA 3NVZC 1X1OA 1YJ9H 1FO4A 5MLCO 1Q81J 1QPOA 5MPOC 2QEXH 5EY3A 4GA5A 3C2EA 1KQSH 4USAA 3CCJH 3L0GA 1QPRA 3DLLJ 3L4PA 1Q7YJ 4GA4A 1M1KJ 5GAHN 2OTLH 3CCEH 2WK5A 3WO0A 2W55B 1YIJH 4ZOHA 5HUOA 1VQ5H 1VQ4H 5H1SO 4I9AA 2B7NA 3CMEH 2E3TA 2ZJPJ 4C7ZA 3G6EH 4C80A 1YITH 1FIQC 4WFNJ 1SIJA 1VLBA 3OW2H 2OTJH 1NVIE 1VQKH 4US9A 2ZJRJ 1VQ8H 2I1OA 5HUPA 3CCSH 1UOUA 4AP8A 3TQVA 4UY8M 3CCUH 2WP4A 1VDVA 3CC2H 1VQMH 3G4SH 3RPFA 2QA4H 1O4UA 3AMZA 3CCLH 1QAPA 1N8RJ 3CPWH 1Q82J 2B7PA 3ETRC 1WYGA 1JRPB 3I55H 3B9JC 3CCMH 2B7QA 3CCRH 4KWVA 3CCVH 2PA2A 1V97A 3FAHA 5HULA 5GAEN 5AYXA 5JVGJ 1DGJA 1YJWH 1VQPH 3I56H 1W2BH 2DSJA 1ZXIB 2J0FA
chains in the Genus database with same CATH topology
1K8AJ 1QVFH 5DM6J 1YHQH 1JJ2H 4U67J 1KC8J 5HL7J 1K9MJ 3J7ZM 3PIPJ 1VQNH 4IOCJ 1M90J 3G71H 1QVGH 3CCQH 5JVHJ 1VQ9H 5GAGN 4IO9J 3PIOJ 1K73J 1WKIA 1VQ6H 3CC4H 4WFBJ 1VQOH 1VQLH 2ZJQJ 1NJIJ 1Y69K 1KD1J 4WCEJ 3CC7H 1VQ7H 1Q86J 5DM7J 3CXCH 4WF9J 4IOAJ 5GADN 5AN9F 3CMAH 1S72H 1YJNH 3CD6H 4WFAJ 3CF5J 1YI2H 1YJ9H 5MLCO 1Q81J 2QEXH 1KQSH 3CCJH 3DLLJ 1Q7YJ 1M1KJ 5GAHN 2OTLH 3CCEH 1YIJH 1VQ5H 1VQ4H 5H1SO 3CMEH 2ZJPJ 3G6EH 1YITH 4WFNJ 3OW2H 2OTJH 1VQKH 2ZJRJ 1VQ8H 3CCSH 4UY8M 3CCUH 3CC2H 1VQMH 3G4SH 2QA4H 3CCLH 1N8RJ 3CPWH 1Q82J 3I55H 3CCMH 3CCRH 3CCVH 2PA2A 5GAEN 5JVGJ 1YJWH 1VQPH 3I56H 1W2BH
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K8A J;  1QVF H;  5DM6 J;  1YHQ H;  1JJ2 H;  4U67 J;  1KC8 J;  5HL7 J;  1K9M J;  3J7Z M;  3PIP J;  1VQN H;  4IOC J;  1M90 J;  3G71 H;  1QVG H;  3CCQ H;  5JVH J;  1VQ9 H;  5GAG N;  4IO9 J;  3PIO J;  1K73 J;  1WKI A;  1VQ6 H;  3CC4 H;  4WFB J;  1VQO H;  1VQL H;  2ZJQ J;  1NJI J;  1Y69 K;  1KD1 J;  4WCE J;  3CC7 H;  1VQ7 H;  1Q86 J;  5DM7 J;  3CXC H;  4WF9 J;  4IOA J;  5GAD N;  5AN9 F;  3CMA H;  1S72 H;  1YJN H;  3CD6 H;  4WFA J;  3CF5 J;  1YI2 H;  1YJ9 H;  5MLC O;  1Q81 J;  2QEX H;  1KQS H;  3CCJ H;  3DLL J;  1Q7Y J;  1M1K J;  5GAH N;  2OTL H;  3CCE H;  1YIJ H;  1VQ5 H;  1VQ4 H;  5H1S O;  3CME H;  2ZJP J;  3G6E H;  1YIT H;  4WFN J;  3OW2 H;  2OTJ H;  1VQK H;  2ZJR J;  1VQ8 H;  3CCS H;  4UY8 M;  3CCU H;  3CC2 H;  1VQM H;  3G4S H;  2QA4 H;  3CCL H;  1N8R J;  3CPW H;  1Q82 J;  3I55 H;  3CCM H;  3CCR H;  3CCV H;  2PA2 A;  5GAE N;  5JVG J;  1YJW H;  1VQP H;  3I56 H;  1W2B H; 
#chains in the Genus database with same CATH topology
 3BII E;  3C2F A;  3AN1 A;  1K8A J;  3WO1 A;  1BRW A;  2WK6 A;  4YEK A;  1QVF H;  1NVJ A;  3NVW C;  5DM6 J;  4US8 A;  1YHQ H;  1JJ2 H;  4U67 J;  1YTE A;  1SB3 A;  1KC8 J;  5HL7 J;  1K9M J;  3J7Z M;  1JRO B;  3GNN A;  5AYY A;  3PIP J;  1VQN H;  1FFV B;  1FMA E;  4IOC J;  3VMM A;  2OMD A;  1N63 B;  1M90 J;  3G71 H;  1AZY A;  1QVG H;  3CCQ H;  1FFU B;  5JVH J;  1VQ9 H;  2Q5W E;  3NVV C;  5GAG N;  4IO9 J;  3FC4 A;  3PIO J;  1K73 J;  1WKI A;  4EAF A;  1VQ6 H;  2TPT A;  4YYY A;  3NRZ C;  4XR5 A;  1N5W B;  3NS1 C;  3CC4 H;  3C2R A;  1YTD A;  3SR6 C;  4WFB J;  1FM0 E;  5EP8 A;  1RM6 A;  1OTP A;  1N5X A;  1VQO H;  1VQL H;  3EUB 4;  1N61 B;  2JBM A;  3PAJ A;  1QPN A;  2ZJQ J;  1NJI J;  3NVY C;  3AM9 A;  1YTK A;  1Y69 K;  2I14 A;  1N62 B;  3H5Q A;  1KD1 J;  4WCE J;  2W54 B;  1VQ7 H;  3CC7 H;  3WNZ A;  5AYZ A;  1Q86 J;  1QPQ A;  4GA6 A;  2W3R B;  5DM7 J;  3CXC H;  4X46 A;  4WF9 J;  4IOA J;  5GAD N;  5AN9 F;  3CMA H;  2W3S B;  3C2V A;  1S72 H;  1YJN H;  3CD6 H;  4KWW A;  4C7Y A;  4EAD A;  2QIE A;  3C2O A;  4WFA J;  1N60 B;  3CF5 J;  1YI2 H;  4LHM A;  3NVZ C;  1X1O A;  1YJ9 H;  1FO4 A;  5MLC O;  1Q81 J;  1QPO A;  5MPO C;  2QEX H;  5EY3 A;  4GA5 A;  3C2E A;  1KQS H;  4USA A;  3CCJ H;  3L0G A;  1QPR A;  3DLL J;  3L4P A;  1Q7Y J;  4GA4 A;  1M1K J;  5GAH N;  2OTL H;  3CCE H;  2WK5 A;  3WO0 A;  2W55 B;  1YIJ H;  4ZOH A;  5HUO A;  1VQ5 H;  1VQ4 H;  5H1S O;  4I9A A;  2B7N A;  3CME H;  2E3T A;  2ZJP J;  4C7Z A;  3G6E H;  4C80 A;  1YIT H;  1FIQ C;  4WFN J;  1SIJ A;  1VLB A;  3OW2 H;  2OTJ H;  1NVI E;  1VQK H;  4US9 A;  2ZJR J;  1VQ8 H;  2I1O A;  5HUP A;  3CCS H;  1UOU A;  4AP8 A;  3TQV A;  4UY8 M;  3CCU H;  2WP4 A;  1VDV A;  3CC2 H;  1VQM H;  3G4S H;  3RPF A;  2QA4 H;  1O4U A;  3AMZ A;  3CCL H;  1QAP A;  1N8R J;  3CPW H;  1Q82 J;  2B7P A;  3ETR C;  1WYG A;  1JRP B;  3I55 H;  3B9J C;  3CCM H;  2B7Q A;  3CCR H;  4KWV A;  3CCV H;  2PA2 A;  1V97 A;  3FAH A;  5HUL A;  5GAE N;  5AYX A;  5JVG J;  1DGJ A;  1YJW H;  1VQP H;  3I56 H;  1W2B H;  2DSJ A;  1ZXI B;  2J0F A; 
#chains in the Genus database with same CATH homology
 1K8A J;  1QVF H;  5DM6 J;  1YHQ H;  1JJ2 H;  4U67 J;  1KC8 J;  5HL7 J;  1K9M J;  3J7Z M;  3PIP J;  1VQN H;  4IOC J;  1M90 J;  3G71 H;  1QVG H;  3CCQ H;  5JVH J;  1VQ9 H;  5GAG N;  4IO9 J;  3PIO J;  1K73 J;  1WKI A;  1VQ6 H;  3CC4 H;  4WFB J;  1VQO H;  1VQL H;  2ZJQ J;  1NJI J;  1Y69 K;  1KD1 J;  4WCE J;  3CC7 H;  1VQ7 H;  1Q86 J;  5DM7 J;  3CXC H;  4WF9 J;  4IOA J;  5GAD N;  5AN9 F;  3CMA H;  1S72 H;  1YJN H;  3CD6 H;  4WFA J;  3CF5 J;  1YI2 H;  1YJ9 H;  5MLC O;  1Q81 J;  2QEX H;  1KQS H;  3CCJ H;  3DLL J;  1Q7Y J;  1M1K J;  5GAH N;  2OTL H;  3CCE H;  1YIJ H;  1VQ5 H;  1VQ4 H;  5H1S O;  3CME H;  2ZJP J;  3G6E H;  1YIT H;  4WFN J;  3OW2 H;  2OTJ H;  1VQK H;  2ZJR J;  1VQ8 H;  3CCS H;  4UY8 M;  3CCU H;  3CC2 H;  1VQM H;  3G4S H;  2QA4 H;  3CCL H;  1N8R J;  3CPW H;  1Q82 J;  3I55 H;  3CCM H;  3CCR H;  3CCV H;  2PA2 A;  5GAE N;  5JVG J;  1YJW H;  1VQP H;  3I56 H;  1W2B H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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