3CC4R

Co-crystal structure of anisomycin bound to the 50s ribosomal subunit
Total Genus 39
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
150
structure length
150
Chain Sequence
GISYSVEADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILEEP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Ribosome
molecule keywords 50S ribosomal protein L2P
publication title Mutations outside the anisomycin-binding site can make ribosomes drug-resistant.
pubmed doi rcsb
total genus 39
structure length 150
sequence length 150
ec nomenclature
pdb deposition date 2008-02-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF00237 Ribosomal_L22 Ribosomal protein L22p/L17e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.470.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22; Chain A Ribosomal protein L22/L17 3cc4R00
3CD6R 5MLCU 5GAHT 1VQMR 1M90S 1VQ8R 3G71R 3CCLR 4WFAP 1Q86S 1YJ9R 1VQ5R 4IOCP 1Q82S 1K9MS 3CCVR 3G4SR 1VQ9R 3CC7R 5GAGT 3CMAR 1M1KS 4U67P 3OW2Q 2OTLR 4IOAP 1KQSQ 1W2BQ 5GADT 4V19W 3CCJR 1VQ7R 3CF5P 2ZJPP 1YHQR 1QVGQ 1Q81S 4WFNP 1K8AS 4WFBP 1VQLR 1YI2R 2QEXR 3PIOP 5GAET 2ZJQP 1BXEA 3CC4R 3CCMR 1YJWR 1VQNR 1QVFQ 1NJIS 2QA4R 3CCRR 5HL7P 2ZJRP 1KD1S 1VQKR 3CC2R 4WF9P 5JVHP 3CMER 1K73S 1N8RS 3CCQR 3CCUR 1VQOR 3PIPP 4WCEP 5DM6P 4IO9P 3I55R 1YITR 4UY8S 1I4JA 1S72R 1VQ6R 1Q7YS 1YIJR 1JJ2Q 5JVGP 5DM7P 1VQPR 3DLLP 5H1SU 3J7ZS 3CCSR 3I56R 1YJNR 1VQ4R 3G6ER 3CXCQ 3CPWQ 3J7YT 1KC8S 2OTJR 3CCER
chains in the Genus database with same CATH superfamily
3CD6R 5MLCU 5GAHT 1VQMR 2WDSA 1M90S 1VQ8R 3G71R 5CXDA 3CCLR 2WDOA 5CMOA 4WFAP 1Q86S 1F80A 1YJ9R 2BYDA 1VQ5R 4IOCP 1Q82S 2CG5A 1K9MS 2C43A 3CCVR 3G4SR 1VQ9R 3CC7R 5GAGT 3CMAR 1F7LA 1M1KS 1F7TA 3H7QA 4U67P 1NBWA 3OW2Q 2OTLR 4IOAP 1KQSQ 1W2BQ 5GADT 4V19W 1VQ7R 3CF5P 3QMNA 2ZJPP 1YHQR 1QVGQ 1Q81S 3HYKA 4WFNP 4JM7A 1K8AS 4WFBP 1VQLR 2JCAA 1YI2R 2BDDA 2QEXR 3PIOP 3NFDA 5GAET 2ZJQP 1BXEA 3CC4R 3CCMR 2WASA 1YJWR 1VQNR 1KC8S 1QVFQ 4MRTA 1NJIS 2QA4R 1FTEA 3CCRR 5HL7P 2ZJRP 1KD1S 1VQKR 3CC2R 4DXEA 4WF9P 5JVHP 3NE3B 3CMER 1K73S 1N8RS 4HC6A 3CCQR 2D0PA 2WDYA 3CCUR 1VQOR 2WASB 3PIPP 2D0OA 4WCEP 5DM6P 4IO9P 3I55R 1YITR 3NE9A 4UY8S 1I4JA 2QG8A 1FTHA 1S72R 1VQ6R 2JBZA 1Q7YS 1YIJR 1JJ2Q 2WATA 5JVGP 5DM7P 1VQPR 3NE1A 3DLLP 5H1SU 3J7ZS 1FTFA 3CCSR 3I56R 1YJNR 1VQ4R 3G6ER 3CXCQ 3CPWQ 3J7YT 3GWMA 1QR0A 3CCJR 3HQJA 2OTJR 3CCER
chains in the Genus database with same CATH topology
3CD6R 5MLCU 5GAHT 1VQMR 1M90S 1VQ8R 3G71R 3CCLR 4WFAP 1Q86S 1YJ9R 1VQ5R 4IOCP 1Q82S 1K9MS 3CCVR 3G4SR 1VQ9R 3CC7R 5GAGT 3CMAR 1M1KS 4U67P 3OW2Q 2OTLR 4IOAP 1KQSQ 1W2BQ 5GADT 4V19W 3CCJR 1VQ7R 3CF5P 2ZJPP 1YHQR 1QVGQ 1Q81S 4WFNP 1K8AS 4WFBP 1VQLR 1YI2R 2QEXR 3PIOP 5GAET 2ZJQP 1BXEA 3CC4R 3CCMR 1YJWR 1VQNR 1QVFQ 1NJIS 2QA4R 3CCRR 5HL7P 2ZJRP 1KD1S 1VQKR 3CC2R 4WF9P 5JVHP 3CMER 1K73S 1N8RS 3CCQR 3CCUR 1VQOR 3PIPP 4WCEP 5DM6P 4IO9P 3I55R 1YITR 4UY8S 1I4JA 1S72R 1VQ6R 1Q7YS 1YIJR 1JJ2Q 5JVGP 5DM7P 1VQPR 3DLLP 5H1SU 3J7ZS 3CCSR 3I56R 1YJNR 1VQ4R 3G6ER 3CXCQ 3CPWQ 3J7YT 1KC8S 2OTJR 3CCER
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CD6 R;  5MLC U;  5GAH T;  1VQM R;  1M90 S;  1VQ8 R;  3G71 R;  3CCL R;  4WFA P;  1Q86 S;  1YJ9 R;  1VQ5 R;  4IOC P;  1Q82 S;  1K9M S;  3CCV R;  3G4S R;  1VQ9 R;  3CC7 R;  5GAG T;  3CMA R;  1M1K S;  4U67 P;  3OW2 Q;  2OTL R;  4IOA P;  1KQS Q;  1W2B Q;  5GAD T;  4V19 W;  3CCJ R;  1VQ7 R;  3CF5 P;  2ZJP P;  1YHQ R;  1QVG Q;  1Q81 S;  4WFN P;  1K8A S;  4WFB P;  1VQL R;  1YI2 R;  2QEX R;  3PIO P;  5GAE T;  2ZJQ P;  1BXE A;  3CC4 R;  3CCM R;  1YJW R;  1VQN R;  1QVF Q;  1NJI S;  2QA4 R;  3CCR R;  5HL7 P;  2ZJR P;  1KD1 S;  1VQK R;  3CC2 R;  4WF9 P;  5JVH P;  3CME R;  1K73 S;  1N8R S;  3CCQ R;  3CCU R;  1VQO R;  3PIP P;  4WCE P;  5DM6 P;  4IO9 P;  3I55 R;  1YIT R;  4UY8 S;  1I4J A;  1S72 R;  1VQ6 R;  1Q7Y S;  1YIJ R;  1JJ2 Q;  5JVG P;  5DM7 P;  1VQP R;  3DLL P;  5H1S U;  3J7Z S;  3CCS R;  3I56 R;  1YJN R;  1VQ4 R;  3G6E R;  3CXC Q;  3CPW Q;  3J7Y T;  1KC8 S;  2OTJ R;  3CCE R; 
#chains in the Genus database with same CATH topology
 3CD6 R;  5MLC U;  5GAH T;  1VQM R;  2WDS A;  1M90 S;  1VQ8 R;  3G71 R;  5CXD A;  3CCL R;  2WDO A;  5CMO A;  4WFA P;  1Q86 S;  1F80 A;  1YJ9 R;  2BYD A;  1VQ5 R;  4IOC P;  1Q82 S;  2CG5 A;  1K9M S;  2C43 A;  3CCV R;  3G4S R;  1VQ9 R;  3CC7 R;  5GAG T;  3CMA R;  1F7L A;  1M1K S;  1F7T A;  3H7Q A;  4U67 P;  1NBW A;  3OW2 Q;  2OTL R;  4IOA P;  1KQS Q;  1W2B Q;  5GAD T;  4V19 W;  1VQ7 R;  3CF5 P;  3QMN A;  2ZJP P;  1YHQ R;  1QVG Q;  1Q81 S;  3HYK A;  4WFN P;  4JM7 A;  1K8A S;  4WFB P;  1VQL R;  2JCA A;  1YI2 R;  2BDD A;  2QEX R;  3PIO P;  3NFD A;  5GAE T;  2ZJQ P;  1BXE A;  3CC4 R;  3CCM R;  2WAS A;  1YJW R;  1VQN R;  1KC8 S;  1QVF Q;  4MRT A;  1NJI S;  2QA4 R;  1FTE A;  3CCR R;  5HL7 P;  2ZJR P;  1KD1 S;  1VQK R;  3CC2 R;  4DXE A;  4WF9 P;  5JVH P;  3NE3 B;  3CME R;  1K73 S;  1N8R S;  4HC6 A;  3CCQ R;  2D0P A;  2WDY A;  3CCU R;  1VQO R;  2WAS B;  3PIP P;  2D0O A;  4WCE P;  5DM6 P;  4IO9 P;  3I55 R;  1YIT R;  3NE9 A;  4UY8 S;  1I4J A;  2QG8 A;  1FTH A;  1S72 R;  1VQ6 R;  2JBZ A;  1Q7Y S;  1YIJ R;  1JJ2 Q;  2WAT A;  5JVG P;  5DM7 P;  1VQP R;  3NE1 A;  3DLL P;  5H1S U;  3J7Z S;  1FTF A;  3CCS R;  3I56 R;  1YJN R;  1VQ4 R;  3G6E R;  3CXC Q;  3CPW Q;  3J7Y T;  3GWM A;  1QR0 A;  3CCJ R;  3HQJ A;  2OTJ R;  3CCE R; 
#chains in the Genus database with same CATH homology
 3CD6 R;  5MLC U;  5GAH T;  1VQM R;  1M90 S;  1VQ8 R;  3G71 R;  3CCL R;  4WFA P;  1Q86 S;  1YJ9 R;  1VQ5 R;  4IOC P;  1Q82 S;  1K9M S;  3CCV R;  3G4S R;  1VQ9 R;  3CC7 R;  5GAG T;  3CMA R;  1M1K S;  4U67 P;  3OW2 Q;  2OTL R;  4IOA P;  1KQS Q;  1W2B Q;  5GAD T;  4V19 W;  3CCJ R;  1VQ7 R;  3CF5 P;  2ZJP P;  1YHQ R;  1QVG Q;  1Q81 S;  4WFN P;  1K8A S;  4WFB P;  1VQL R;  1YI2 R;  2QEX R;  3PIO P;  5GAE T;  2ZJQ P;  1BXE A;  3CC4 R;  3CCM R;  1YJW R;  1VQN R;  1QVF Q;  1NJI S;  2QA4 R;  3CCR R;  5HL7 P;  2ZJR P;  1KD1 S;  1VQK R;  3CC2 R;  4WF9 P;  5JVH P;  3CME R;  1K73 S;  1N8R S;  3CCQ R;  3CCU R;  1VQO R;  3PIP P;  4WCE P;  5DM6 P;  4IO9 P;  3I55 R;  1YIT R;  4UY8 S;  1I4J A;  1S72 R;  1VQ6 R;  1Q7Y S;  1YIJ R;  1JJ2 Q;  5JVG P;  5DM7 P;  1VQP R;  3DLL P;  5H1S U;  3J7Z S;  3CCS R;  3I56 R;  1YJN R;  1VQ4 R;  3G6E R;  3CXC Q;  3CPW Q;  3J7Y T;  1KC8 S;  2OTJ R;  3CCE R; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...