3CC7J

Structure of anisomycin resistant 50s ribosomal subunit: 23s rrna mutation c2487u
Total Genus 44
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
142
structure length
142
Chain Sequence
AEFDADVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKYEKRVDIGNDNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYDEDGEVLDGTSLDRLSNIKFVTLGEISETLGANKTW
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Ribosome
molecule keywords 50S ribosomal protein L2P
publication title Mutations outside the anisomycin-binding site can make ribosomes drug-resistant.
pubmed doi rcsb
total genus 44
structure length 142
sequence length 142
ec nomenclature
pdb deposition date 2008-02-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
J PF00572 Ribosomal_L13 Ribosomal protein L13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1180.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L13p; Chain: A; Ribosomal protein L13 3cc7J00
1Q82K 1K8AK 1K9MK 3CF5G 1VQPJ 2ZJRG 4IOCG 3PIPG 3CCSJ 3CCEJ 3DLLG 3G6EJ 1W2BI 1M1KK 3CCQJ 3G71J 3CXCI 1KQSI 1YI2J 1Q7YK 3PIOG 2ZJQG 3I56J 3CMEJ 1VQLJ 1YHQJ 1N8RK 4V19N 2OTJJ 1VQOJ 1YJNJ 3CMAJ 1K73K 3CC2J 3CPWI 3CCUJ 4IOAG 1YJ9J 3CC4J 1YITJ 4IO9G 1VQ5J 2QA4J 1KD1K 3CCRJ 1JJ2I 1VQ7J 1J3AA 1Q81K 1NJIK 2QEXJ 3OW2I 2OTLJ 3CCVJ 1VQ4J 3I55J 3CD6J 3G4SJ 1Q86K 1QVGI 1S72J 1M90K 1VQ8J 1QVFI 1VQMJ 3CCMJ 3CCJJ 1VQ6J 1YJWJ 3CC7J 2ZJPG 1VQ9J 1VQKJ 3CCLJ 3J7YK 1KC8K 1VQNJ 1YIJJ
chains in the Genus database with same CATH superfamily
1Q82K 1K8AK 1K9MK 3CF5G 1VQPJ 2ZJRG 4IOCG 3PIPG 3CCSJ 3CCEJ 3DLLG 3G6EJ 1W2BI 1M1KK 3CCQJ 3G71J 3CXCI 1KQSI 1YI2J 1Q7YK 3PIOG 2ZJQG 3I56J 3CMEJ 1VQLJ 1YHQJ 1N8RK 4V19N 2OTJJ 1VQOJ 1YJNJ 3CMAJ 1K73K 3CC2J 3CPWI 3CCUJ 4IOAG 1YJ9J 3CC4J 1YITJ 4IO9G 1VQ5J 2QA4J 1KD1K 3CCRJ 1JJ2I 1VQ7J 1J3AA 1Q81K 1NJIK 2QEXJ 3OW2I 2OTLJ 3CCVJ 1VQ4J 3I55J 3CD6J 3G4SJ 1Q86K 1QVGI 1S72J 1M90K 1VQ8J 1QVFI 1VQMJ 3CCMJ 3CCJJ 1VQ6J 1YJWJ 3CC7J 2ZJPG 1VQ9J 1VQKJ 3CCLJ 3J7YK 1KC8K 1VQNJ 1YIJJ
chains in the Genus database with same CATH topology
1Q82K 1K8AK 1K9MK 3CF5G 1VQPJ 2ZJRG 4IOCG 3PIPG 3CCSJ 3CCEJ 3DLLG 3G6EJ 1W2BI 1M1KK 3CCQJ 3G71J 3CXCI 1KQSI 1YI2J 1Q7YK 3PIOG 2ZJQG 3I56J 3CMEJ 1VQLJ 1YHQJ 1N8RK 4V19N 2OTJJ 1VQOJ 1YJNJ 3CMAJ 1K73K 3CC2J 3CPWI 3CCUJ 4IOAG 1YJ9J 3CC4J 1YITJ 4IO9G 1VQ5J 2QA4J 1KD1K 3CCRJ 1JJ2I 1VQ7J 1J3AA 1Q81K 1NJIK 2QEXJ 3OW2I 2OTLJ 3CCVJ 1VQ4J 3I55J 3CD6J 3G4SJ 1Q86K 1QVGI 1S72J 1M90K 1VQ8J 1QVFI 1VQMJ 3CCMJ 3CCJJ 1VQ6J 1YJWJ 3CC7J 2ZJPG 1VQ9J 1VQKJ 3CCLJ 3J7YK 1KC8K 1VQNJ 1YIJJ
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Q82 K;  1K8A K;  1K9M K;  3CF5 G;  1VQP J;  2ZJR G;  4IOC G;  3PIP G;  3CCS J;  3CCE J;  3DLL G;  3G6E J;  1W2B I;  1M1K K;  3CCQ J;  3G71 J;  3CXC I;  1KQS I;  1YI2 J;  1Q7Y K;  3PIO G;  2ZJQ G;  3I56 J;  3CME J;  1VQL J;  1YHQ J;  1N8R K;  4V19 N;  2OTJ J;  1VQO J;  1YJN J;  3CMA J;  1K73 K;  3CC2 J;  3CPW I;  3CCU J;  4IOA G;  1YJ9 J;  3CC4 J;  1YIT J;  4IO9 G;  1VQ5 J;  2QA4 J;  1KD1 K;  3CCR J;  1JJ2 I;  1VQ7 J;  1J3A A;  1Q81 K;  1NJI K;  2QEX J;  3OW2 I;  2OTL J;  3CCV J;  1VQ4 J;  3I55 J;  3CD6 J;  3G4S J;  1Q86 K;  1QVG I;  1S72 J;  1M90 K;  1VQ8 J;  1QVF I;  1VQM J;  3CCM J;  3CCJ J;  1VQ6 J;  1YJW J;  3CC7 J;  2ZJP G;  1VQ9 J;  1VQK J;  3CCL J;  3J7Y K;  1KC8 K;  1VQN J;  1YIJ J; 
#chains in the Genus database with same CATH topology
 1Q82 K;  1K8A K;  1K9M K;  3CF5 G;  1VQP J;  2ZJR G;  4IOC G;  3PIP G;  3CCS J;  3CCE J;  3DLL G;  3G6E J;  1W2B I;  1M1K K;  3CCQ J;  3G71 J;  3CXC I;  1KQS I;  1YI2 J;  1Q7Y K;  3PIO G;  2ZJQ G;  3I56 J;  3CME J;  1VQL J;  1YHQ J;  1N8R K;  4V19 N;  2OTJ J;  1VQO J;  1YJN J;  3CMA J;  1K73 K;  3CC2 J;  3CPW I;  3CCU J;  4IOA G;  1YJ9 J;  3CC4 J;  1YIT J;  4IO9 G;  1VQ5 J;  2QA4 J;  1KD1 K;  3CCR J;  1JJ2 I;  1VQ7 J;  1J3A A;  1Q81 K;  1NJI K;  2QEX J;  3OW2 I;  2OTL J;  3CCV J;  1VQ4 J;  3I55 J;  3CD6 J;  3G4S J;  1Q86 K;  1QVG I;  1S72 J;  1M90 K;  1VQ8 J;  1QVF I;  1VQM J;  3CCM J;  3CCJ J;  1VQ6 J;  1YJW J;  3CC7 J;  2ZJP G;  1VQ9 J;  1VQK J;  3CCL J;  3J7Y K;  1KC8 K;  1VQN J;  1YIJ J; 
#chains in the Genus database with same CATH homology
 1Q82 K;  1K8A K;  1K9M K;  3CF5 G;  1VQP J;  2ZJR G;  4IOC G;  3PIP G;  3CCS J;  3CCE J;  3DLL G;  3G6E J;  1W2B I;  1M1K K;  3CCQ J;  3G71 J;  3CXC I;  1KQS I;  1YI2 J;  1Q7Y K;  3PIO G;  2ZJQ G;  3I56 J;  3CME J;  1VQL J;  1YHQ J;  1N8R K;  4V19 N;  2OTJ J;  1VQO J;  1YJN J;  3CMA J;  1K73 K;  3CC2 J;  3CPW I;  3CCU J;  4IOA G;  1YJ9 J;  3CC4 J;  1YIT J;  4IO9 G;  1VQ5 J;  2QA4 J;  1KD1 K;  3CCR J;  1JJ2 I;  1VQ7 J;  1J3A A;  1Q81 K;  1NJI K;  2QEX J;  3OW2 I;  2OTL J;  3CCV J;  1VQ4 J;  3I55 J;  3CD6 J;  3G4S J;  1Q86 K;  1QVG I;  1S72 J;  1M90 K;  1VQ8 J;  1QVF I;  1VQM J;  3CCM J;  3CCJ J;  1VQ6 J;  1YJW J;  3CC7 J;  2ZJP G;  1VQ9 J;  1VQK J;  3CCL J;  3J7Y K;  1KC8 K;  1VQN J;  1YIJ J; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...