3CCEJ

Structure of anisomycin resistant 50s ribosomal subunit: 23s rrna mutation u2535a
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
142
structure length
142
Chain Sequence
AEFDADVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKYEKRVDIGNDNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYDEDGEVLDGTSLDRLSNIKFVTLGEISETLGANKTW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 50S ribosomal protein L2P
publication title Mutations outside the anisomycin-binding site can make ribosomes drug-resistant.
pubmed doi rcsb
total genus 39
structure length 142
sequence length 142
ec nomenclature
pdb deposition date 2008-02-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
J PF00572 Ribosomal_L13 Ribosomal protein L13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1180.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L13p; Chain: A; Ribosomal protein L13 3cceJ00
3G4SJ 1Q7YK 1VQ9J 1QVGI 3CXCI 2ZJQG 1VQ8J 1VQMJ 4IOAG 3I55J 3CCSJ 3G6EJ 3CC7J 1KQSI 1YI2J 1KD1K 3PIOG 3CCLJ 2OTJJ 3CCEJ 3CCJJ 1Q81K 1YIJJ 1Q82K 3CPWI 1K9MK 1K8AK 3PIPG 3CC2J 4IOCG 1VQKJ 1VQ5J 3CMAJ 1S72J 1NJIK 3G71J 1VQ4J 3CCUJ 1VQLJ 1Q86K 1YITJ 1K73K 4V19N 3J7YK 1VQPJ 3CD6J 1YJWJ 1YHQJ 3CMEJ 3CCVJ 1VQ7J 1VQ6J 2OTLJ 2QEXJ 1YJ9J 1KC8K 3CC4J 1N8RK 1QVFI 1J3AA 1JJ2I 2ZJPG 1YJNJ 3DLLG 1W2BI 1M90K 3CCMJ 2ZJRG 3CCRJ 3CCQJ 1M1KK 3CF5G 3I56J 4IO9G 3OW2I 2QA4J 1VQOJ 1VQNJ
chains in the Genus database with same CATH superfamily
3G4SJ 1Q7YK 1VQ9J 1QVGI 3CXCI 2ZJQG 1VQ8J 1VQMJ 4IOAG 3I55J 3CCSJ 3G6EJ 3CC7J 1KQSI 1YI2J 1KD1K 3PIOG 3CCLJ 2OTJJ 3CCEJ 3CCJJ 1Q81K 1YIJJ 1Q82K 3CPWI 1K9MK 1K8AK 3PIPG 3CC2J 4IOCG 1VQKJ 1VQ5J 3CMAJ 1S72J 1NJIK 3G71J 1VQ4J 3CCUJ 1VQLJ 1Q86K 1YITJ 1K73K 4V19N 3J7YK 1VQPJ 3CD6J 1YJWJ 1YHQJ 3CMEJ 3CCVJ 1VQ7J 1VQ6J 2OTLJ 2QEXJ 1YJ9J 1KC8K 3CC4J 1N8RK 1QVFI 1J3AA 1JJ2I 2ZJPG 1YJNJ 3DLLG 1W2BI 1M90K 3CCMJ 2ZJRG 3CCRJ 3CCQJ 1M1KK 3CF5G 3I56J 4IO9G 3OW2I 2QA4J 1VQOJ 1VQNJ
chains in the Genus database with same CATH topology
3G4SJ 1Q7YK 1VQ9J 1QVGI 3CXCI 2ZJQG 1VQ8J 1VQMJ 4IOAG 3I55J 3CCSJ 3G6EJ 3CC7J 1KQSI 1YI2J 1KD1K 3PIOG 3CCLJ 2OTJJ 3CCEJ 3CCJJ 1Q81K 1YIJJ 1Q82K 3CPWI 1K9MK 1K8AK 3PIPG 3CC2J 4IOCG 1VQKJ 1VQ5J 3CMAJ 1S72J 1NJIK 3G71J 1VQ4J 3CCUJ 1VQLJ 1Q86K 1YITJ 1K73K 4V19N 3J7YK 1VQPJ 3CD6J 1YJWJ 1YHQJ 3CMEJ 3CCVJ 1VQ7J 1VQ6J 2OTLJ 2QEXJ 1YJ9J 1KC8K 3CC4J 1N8RK 1QVFI 1J3AA 1JJ2I 2ZJPG 1YJNJ 3DLLG 1W2BI 1M90K 3CCMJ 2ZJRG 3CCRJ 3CCQJ 1M1KK 3CF5G 3I56J 4IO9G 3OW2I 2QA4J 1VQOJ 1VQNJ
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3G4S J;  1Q7Y K;  1VQ9 J;  1QVG I;  3CXC I;  2ZJQ G;  1VQ8 J;  1VQM J;  4IOA G;  3I55 J;  3CCS J;  3G6E J;  3CC7 J;  1KQS I;  1YI2 J;  1KD1 K;  3PIO G;  3CCL J;  2OTJ J;  3CCE J;  3CCJ J;  1Q81 K;  1YIJ J;  1Q82 K;  3CPW I;  1K9M K;  1K8A K;  3PIP G;  3CC2 J;  4IOC G;  1VQK J;  1VQ5 J;  3CMA J;  1S72 J;  1NJI K;  3G71 J;  1VQ4 J;  3CCU J;  1VQL J;  1Q86 K;  1YIT J;  1K73 K;  4V19 N;  3J7Y K;  1VQP J;  3CD6 J;  1YJW J;  1YHQ J;  3CME J;  3CCV J;  1VQ7 J;  1VQ6 J;  2OTL J;  2QEX J;  1YJ9 J;  1KC8 K;  3CC4 J;  1N8R K;  1QVF I;  1J3A A;  1JJ2 I;  2ZJP G;  1YJN J;  3DLL G;  1W2B I;  1M90 K;  3CCM J;  2ZJR G;  3CCR J;  3CCQ J;  1M1K K;  3CF5 G;  3I56 J;  4IO9 G;  3OW2 I;  2QA4 J;  1VQO J;  1VQN J; 
#chains in the Genus database with same CATH topology
 3G4S J;  1Q7Y K;  1VQ9 J;  1QVG I;  3CXC I;  2ZJQ G;  1VQ8 J;  1VQM J;  4IOA G;  3I55 J;  3CCS J;  3G6E J;  3CC7 J;  1KQS I;  1YI2 J;  1KD1 K;  3PIO G;  3CCL J;  2OTJ J;  3CCE J;  3CCJ J;  1Q81 K;  1YIJ J;  1Q82 K;  3CPW I;  1K9M K;  1K8A K;  3PIP G;  3CC2 J;  4IOC G;  1VQK J;  1VQ5 J;  3CMA J;  1S72 J;  1NJI K;  3G71 J;  1VQ4 J;  3CCU J;  1VQL J;  1Q86 K;  1YIT J;  1K73 K;  4V19 N;  3J7Y K;  1VQP J;  3CD6 J;  1YJW J;  1YHQ J;  3CME J;  3CCV J;  1VQ7 J;  1VQ6 J;  2OTL J;  2QEX J;  1YJ9 J;  1KC8 K;  3CC4 J;  1N8R K;  1QVF I;  1J3A A;  1JJ2 I;  2ZJP G;  1YJN J;  3DLL G;  1W2B I;  1M90 K;  3CCM J;  2ZJR G;  3CCR J;  3CCQ J;  1M1K K;  3CF5 G;  3I56 J;  4IO9 G;  3OW2 I;  2QA4 J;  1VQO J;  1VQN J; 
#chains in the Genus database with same CATH homology
 3G4S J;  1Q7Y K;  1VQ9 J;  1QVG I;  3CXC I;  2ZJQ G;  1VQ8 J;  1VQM J;  4IOA G;  3I55 J;  3CCS J;  3G6E J;  3CC7 J;  1KQS I;  1YI2 J;  1KD1 K;  3PIO G;  3CCL J;  2OTJ J;  3CCE J;  3CCJ J;  1Q81 K;  1YIJ J;  1Q82 K;  3CPW I;  1K9M K;  1K8A K;  3PIP G;  3CC2 J;  4IOC G;  1VQK J;  1VQ5 J;  3CMA J;  1S72 J;  1NJI K;  3G71 J;  1VQ4 J;  3CCU J;  1VQL J;  1Q86 K;  1YIT J;  1K73 K;  4V19 N;  3J7Y K;  1VQP J;  3CD6 J;  1YJW J;  1YHQ J;  3CME J;  3CCV J;  1VQ7 J;  1VQ6 J;  2OTL J;  2QEX J;  1YJ9 J;  1KC8 K;  3CC4 J;  1N8R K;  1QVF I;  1J3A A;  1JJ2 I;  2ZJP G;  1YJN J;  3DLL G;  1W2B I;  1M90 K;  3CCM J;  2ZJR G;  3CCR J;  3CCQ J;  1M1K K;  3CF5 G;  3I56 J;  4IO9 G;  3OW2 I;  2QA4 J;  1VQO J;  1VQN J; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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