3CCJJ

Structure of anisomycin resistant 50s ribosomal subunit: 23s rrna mutation c2534u
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
142
structure length
142
Chain Sequence
AEFDADVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKYEKRVDIGNDNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYDEDGEVLDGTSLDRLSNIKFVTLGEISETLGANKTW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 50S ribosomal protein L2P
publication title Mutations outside the anisomycin-binding site can make ribosomes drug-resistant.
pubmed doi rcsb
total genus 41
structure length 142
sequence length 142
ec nomenclature
pdb deposition date 2008-02-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
J PF00572 Ribosomal_L13 Ribosomal protein L13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1180.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L13p; Chain: A; Ribosomal protein L13 3ccjJ00
3CCQJ 4V19N 1Q81K 2ZJQG 3CCVJ 3CC2J 1QVGI 1YHQJ 3I55J 2OTJJ 3CCJJ 1NJIK 1VQ5J 3PIOG 3G6EJ 1VQLJ 3PIPG 3J7YK 1Q82K 2ZJPG 3CPWI 4IO9G 3CMAJ 1K8AK 3CC7J 1KD1K 1YJ9J 4IOAG 3CF5G 1VQ9J 1YJNJ 1K9MK 3OW2I 1VQMJ 1VQPJ 1VQKJ 3CCMJ 1J3AA 1VQNJ 1VQOJ 1YITJ 1Q86K 2QA4J 1YI2J 3CXCI 3CCSJ 3CCLJ 1VQ6J 1S72J 1KC8K 1W2BI 2QEXJ 2ZJRG 3CD6J 1M90K 3CCUJ 3CMEJ 1Q7YK 1N8RK 3CC4J 1M1KK 3CCRJ 1VQ8J 1VQ4J 1YJWJ 1VQ7J 1K73K 3G71J 4IOCG 1JJ2I 3G4SJ 1QVFI 1KQSI 3I56J 2OTLJ 3CCEJ 1YIJJ 3DLLG
chains in the Genus database with same CATH superfamily
3CCQJ 4V19N 1Q81K 2ZJQG 3CCVJ 3CC2J 1QVGI 1YHQJ 3I55J 2OTJJ 3CCJJ 1NJIK 1VQ5J 3PIOG 3G6EJ 1VQLJ 3PIPG 3J7YK 1Q82K 2ZJPG 3CPWI 4IO9G 3CMAJ 1K8AK 3CC7J 1KD1K 1YJ9J 4IOAG 3CF5G 1VQ9J 1YJNJ 1K9MK 3OW2I 1VQMJ 1VQPJ 1VQKJ 3CCMJ 1J3AA 1VQNJ 1VQOJ 1YITJ 1Q86K 2QA4J 1YI2J 3CXCI 3CCSJ 3CCLJ 1VQ6J 1S72J 1KC8K 1W2BI 2QEXJ 2ZJRG 3CD6J 1M90K 3CCUJ 3CMEJ 1Q7YK 1N8RK 3CC4J 1M1KK 3CCRJ 1VQ8J 1VQ4J 1YJWJ 1VQ7J 1K73K 3G71J 4IOCG 1JJ2I 3G4SJ 1QVFI 1KQSI 3I56J 2OTLJ 3CCEJ 1YIJJ 3DLLG
chains in the Genus database with same CATH topology
3CCQJ 4V19N 1Q81K 2ZJQG 3CCVJ 3CC2J 1QVGI 1YHQJ 3I55J 2OTJJ 3CCJJ 1NJIK 1VQ5J 3PIOG 3G6EJ 1VQLJ 3PIPG 3J7YK 1Q82K 2ZJPG 3CPWI 4IO9G 3CMAJ 1K8AK 3CC7J 1KD1K 1YJ9J 4IOAG 3CF5G 1VQ9J 1YJNJ 1K9MK 3OW2I 1VQMJ 1VQPJ 1VQKJ 3CCMJ 1J3AA 1VQNJ 1VQOJ 1YITJ 1Q86K 2QA4J 1YI2J 3CXCI 3CCSJ 3CCLJ 1VQ6J 1S72J 1KC8K 1W2BI 2QEXJ 2ZJRG 3CD6J 1M90K 3CCUJ 3CMEJ 1Q7YK 1N8RK 3CC4J 1M1KK 3CCRJ 1VQ8J 1VQ4J 1YJWJ 1VQ7J 1K73K 3G71J 4IOCG 1JJ2I 3G4SJ 1QVFI 1KQSI 3I56J 2OTLJ 3CCEJ 1YIJJ 3DLLG
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CCQ J;  4V19 N;  1Q81 K;  2ZJQ G;  3CCV J;  3CC2 J;  1QVG I;  1YHQ J;  3I55 J;  2OTJ J;  3CCJ J;  1NJI K;  1VQ5 J;  3PIO G;  3G6E J;  1VQL J;  3PIP G;  3J7Y K;  1Q82 K;  2ZJP G;  3CPW I;  4IO9 G;  3CMA J;  1K8A K;  3CC7 J;  1KD1 K;  1YJ9 J;  4IOA G;  3CF5 G;  1VQ9 J;  1YJN J;  1K9M K;  3OW2 I;  1VQM J;  1VQP J;  1VQK J;  3CCM J;  1J3A A;  1VQN J;  1VQO J;  1YIT J;  1Q86 K;  2QA4 J;  1YI2 J;  3CXC I;  3CCS J;  3CCL J;  1VQ6 J;  1S72 J;  1KC8 K;  1W2B I;  2QEX J;  2ZJR G;  3CD6 J;  1M90 K;  3CCU J;  3CME J;  1Q7Y K;  1N8R K;  3CC4 J;  1M1K K;  3CCR J;  1VQ8 J;  1VQ4 J;  1YJW J;  1VQ7 J;  1K73 K;  3G71 J;  4IOC G;  1JJ2 I;  3G4S J;  1QVF I;  1KQS I;  3I56 J;  2OTL J;  3CCE J;  1YIJ J;  3DLL G; 
#chains in the Genus database with same CATH topology
 3CCQ J;  4V19 N;  1Q81 K;  2ZJQ G;  3CCV J;  3CC2 J;  1QVG I;  1YHQ J;  3I55 J;  2OTJ J;  3CCJ J;  1NJI K;  1VQ5 J;  3PIO G;  3G6E J;  1VQL J;  3PIP G;  3J7Y K;  1Q82 K;  2ZJP G;  3CPW I;  4IO9 G;  3CMA J;  1K8A K;  3CC7 J;  1KD1 K;  1YJ9 J;  4IOA G;  3CF5 G;  1VQ9 J;  1YJN J;  1K9M K;  3OW2 I;  1VQM J;  1VQP J;  1VQK J;  3CCM J;  1J3A A;  1VQN J;  1VQO J;  1YIT J;  1Q86 K;  2QA4 J;  1YI2 J;  3CXC I;  3CCS J;  3CCL J;  1VQ6 J;  1S72 J;  1KC8 K;  1W2B I;  2QEX J;  2ZJR G;  3CD6 J;  1M90 K;  3CCU J;  3CME J;  1Q7Y K;  1N8R K;  3CC4 J;  1M1K K;  3CCR J;  1VQ8 J;  1VQ4 J;  1YJW J;  1VQ7 J;  1K73 K;  3G71 J;  4IOC G;  1JJ2 I;  3G4S J;  1QVF I;  1KQS I;  3I56 J;  2OTL J;  3CCE J;  1YIJ J;  3DLL G; 
#chains in the Genus database with same CATH homology
 3CCQ J;  4V19 N;  1Q81 K;  2ZJQ G;  3CCV J;  3CC2 J;  1QVG I;  1YHQ J;  3I55 J;  2OTJ J;  3CCJ J;  1NJI K;  1VQ5 J;  3PIO G;  3G6E J;  1VQL J;  3PIP G;  3J7Y K;  1Q82 K;  2ZJP G;  3CPW I;  4IO9 G;  3CMA J;  1K8A K;  3CC7 J;  1KD1 K;  1YJ9 J;  4IOA G;  3CF5 G;  1VQ9 J;  1YJN J;  1K9M K;  3OW2 I;  1VQM J;  1VQP J;  1VQK J;  3CCM J;  1J3A A;  1VQN J;  1VQO J;  1YIT J;  1Q86 K;  2QA4 J;  1YI2 J;  3CXC I;  3CCS J;  3CCL J;  1VQ6 J;  1S72 J;  1KC8 K;  1W2B I;  2QEX J;  2ZJR G;  3CD6 J;  1M90 K;  3CCU J;  3CME J;  1Q7Y K;  1N8R K;  3CC4 J;  1M1K K;  3CCR J;  1VQ8 J;  1VQ4 J;  1YJW J;  1VQ7 J;  1K73 K;  3G71 J;  4IOC G;  1JJ2 I;  3G4S J;  1QVF I;  1KQS I;  3I56 J;  2OTL J;  3CCE J;  1YIJ J;  3DLL G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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