3CCJU

Structure of anisomycin resistant 50s ribosomal subunit: 23s rrna mutation c2534u
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
53
structure length
53
Chain Sequence
RECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 50S ribosomal protein L2P
publication title Mutations outside the anisomycin-binding site can make ribosomes drug-resistant.
pubmed doi rcsb
total genus 6
structure length 53
sequence length 53
ec nomenclature
pdb deposition date 2008-02-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
U PF01246 Ribosomal_L24e Ribosomal protein L24e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.170.20 Mainly Beta Roll Ribosomal Protein L24e; Chain: T; Ribosomal Protein L24e; Chain: T; 3ccjU00
3CCMU 5AN9G 1YIJU 2QEXU 3CPWT 2QA4U 1VQMU 1VQ7U 1K8AV 1VQ4U 3CD6U 2OTLU 3CCRU 1W2BT 3CCUU 3CXCT 1KQST 1Q82V 1QVFT 1VQ5U 3CCVU 1Q7YV 1N8RV 3CCEU 3I56U 1M90V 1VQKU 1YITU 3CCJU 3CMAU 1YI2U 3CC4U 1VQ6U 1QVGT 3CC2U 3CCLU 1VQOU 1YJ9U 1M1KV 1VQLU 1YHQU 3G4SU 3CMEU 3CCSU 1YJNU 1K9MV 1VQ8U 1KC8V 3G6EU 3G71U 1YJWU 3OW2T 1NJIV 1VQNU 1S72U 2OTJU 3I55U 1VQPU 3CC7U 1K73V 1JJ2T 1VQ9U 1KD1V 3CCQU 1Q86V 1Q81V
chains in the Genus database with same CATH superfamily
5AN9G 1VQ7U 3CD6U 3CXCT 3ANYA 1Q7YV 5H1SY 1M1KV 1VQLU 2JZ6A 3CMEU 3CCSU 1VQ8U 1JJDA 2OTJU 1YJWU 1VQNU 3I55U 1VQPU 3CC7U 3CCMU 2QA4U 5DM6U 3CCRU 1W2BT 3ABQA 3CCVU 1N8RV 1M90V 1QVGT 3CC2U 3CCLU 1VQOU 1YHQU 3OW2T 1VQ9U 4UY8X 3AO0A 3CCQU 2QEXU 1K8AV 1VQ4U 5MLCY 3CCUU 1QVFT 1VQ5U 1VQKU 3I56U 1YITU 3CCJU 3ABSA 3ABRA 1YJNU 1K9MV 1NJIV 1KD1V 1Q81V 1YIJU 3CPWT 1VQMU 2OTLU 1KQST 1Q82V 3J7ZX 3ABOA 3CCEU 2QEZA 3CMAU 1YI2U 3CC4U 1VQ6U 1YJ9U 3G4SU 1KC8V 3G6EU 3G71U 1S72U 1K73V 1JJ2T 1Q86V
chains in the Genus database with same CATH topology
3CCMU 5AN9G 1YIJU 2QEXU 3CPWT 2QA4U 1VQMU 1VQ7U 1K8AV 1VQ4U 3CD6U 2OTLU 3CCRU 1W2BT 3CCUU 3CXCT 1KQST 1Q82V 1QVFT 1VQ5U 3CCVU 1Q7YV 1N8RV 3CCEU 3I56U 1M90V 1VQKU 1YITU 3CCJU 3CMAU 1YI2U 3CC4U 1VQ6U 1QVGT 3CC2U 3CCLU 1VQOU 1YJ9U 1M1KV 1VQLU 1YHQU 3G4SU 3CMEU 3CCSU 1YJNU 1JJDA 1K9MV 1KC8V 3G6EU 3G71U 1YJWU 3OW2T 1NJIV 1VQ8U 1S72U 1VQNU 2OTJU 3I55U 1VQPU 3CC7U 1K73V 1JJ2T 1VQ9U 1KD1V 3CCQU 1Q86V 1Q81V
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CCM U;  5AN9 G;  1YIJ U;  2QEX U;  3CPW T;  2QA4 U;  1VQM U;  1VQ7 U;  1K8A V;  1VQ4 U;  3CD6 U;  2OTL U;  3CCR U;  1W2B T;  3CCU U;  3CXC T;  1KQS T;  1Q82 V;  1QVF T;  1VQ5 U;  3CCV U;  1Q7Y V;  1N8R V;  3CCE U;  3I56 U;  1M90 V;  1VQK U;  1YIT U;  3CCJ U;  3CMA U;  1YI2 U;  3CC4 U;  1VQ6 U;  1QVG T;  3CC2 U;  3CCL U;  1VQO U;  1YJ9 U;  1M1K V;  1VQL U;  1YHQ U;  3G4S U;  3CME U;  3CCS U;  1YJN U;  1K9M V;  1VQ8 U;  1KC8 V;  3G6E U;  3G71 U;  1YJW U;  3OW2 T;  1NJI V;  1VQN U;  1S72 U;  2OTJ U;  3I55 U;  1VQP U;  3CC7 U;  1K73 V;  1JJ2 T;  1VQ9 U;  1KD1 V;  3CCQ U;  1Q86 V;  1Q81 V; 
#chains in the Genus database with same CATH topology
 5AN9 G;  1VQ7 U;  3CD6 U;  3CXC T;  3ANY A;  1Q7Y V;  5H1S Y;  1M1K V;  1VQL U;  2JZ6 A;  3CME U;  3CCS U;  1VQ8 U;  1JJD A;  2OTJ U;  1YJW U;  1VQN U;  3I55 U;  1VQP U;  3CC7 U;  3CCM U;  2QA4 U;  5DM6 U;  3CCR U;  1W2B T;  3ABQ A;  3CCV U;  1N8R V;  1M90 V;  1QVG T;  3CC2 U;  3CCL U;  1VQO U;  1YHQ U;  3OW2 T;  1VQ9 U;  4UY8 X;  3AO0 A;  3CCQ U;  2QEX U;  1K8A V;  1VQ4 U;  5MLC Y;  3CCU U;  1QVF T;  1VQ5 U;  1VQK U;  3I56 U;  1YIT U;  3CCJ U;  3ABS A;  3ABR A;  1YJN U;  1K9M V;  1NJI V;  1KD1 V;  1Q81 V;  1YIJ U;  3CPW T;  1VQM U;  2OTL U;  1KQS T;  1Q82 V;  3J7Z X;  3ABO A;  3CCE U;  2QEZ A;  3CMA U;  1YI2 U;  3CC4 U;  1VQ6 U;  1YJ9 U;  3G4S U;  1KC8 V;  3G6E U;  3G71 U;  1S72 U;  1K73 V;  1JJ2 T;  1Q86 V; 
#chains in the Genus database with same CATH homology
 3CCM U;  5AN9 G;  1YIJ U;  2QEX U;  3CPW T;  2QA4 U;  1VQM U;  1VQ7 U;  1K8A V;  1VQ4 U;  3CD6 U;  2OTL U;  3CCR U;  1W2B T;  3CCU U;  3CXC T;  1KQS T;  1Q82 V;  1QVF T;  1VQ5 U;  3CCV U;  1Q7Y V;  1N8R V;  3CCE U;  3I56 U;  1M90 V;  1VQK U;  1YIT U;  3CCJ U;  3CMA U;  1YI2 U;  3CC4 U;  1VQ6 U;  1QVG T;  3CC2 U;  3CCL U;  1VQO U;  1YJ9 U;  1M1K V;  1VQL U;  1YHQ U;  3G4S U;  3CME U;  3CCS U;  1YJN U;  1JJD A;  1K9M V;  1KC8 V;  3G6E U;  3G71 U;  1YJW U;  3OW2 T;  1NJI V;  1VQ8 U;  1S72 U;  1VQN U;  2OTJ U;  3I55 U;  1VQP U;  3CC7 U;  1K73 V;  1JJ2 T;  1VQ9 U;  1KD1 V;  3CCQ U;  1Q86 V;  1Q81 V; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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