3CCMW

Structure of anisomycin resistant 50s ribosomal subunit: 23s rrna mutation g2611u
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
154
structure length
154
Chain Sequence
MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 50S ribosomal protein L2P
publication title Mutations outside the anisomycin-binding site can make ribosomes drug-resistant.
pubmed doi rcsb
total genus 52
structure length 154
sequence length 154
ec nomenclature
pdb deposition date 2008-02-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.15.30 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3 3-methyladenine DNA Glycosylase II; Chain A, domain 3 3ccmW02
3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal protein L30, ferredoxin-like fold domain 3ccmW01
5HL7W 5GAGa 1VQ5W 1YI2W 1VQPW 1VQ8W 3CD6W 4WFAW 3G71W 4IOAW 3CMEW 3CF5W 1BXYA 3CXCV 1VQ4W 3CMAW 3CPWV 5GAEa 3PIPW 1YIJW 1VQLW 3PIOW 1W2BV 1JJ2V 1K73X 1Q86X 1VQ7W 3G4SW 2QA4W 3CC2W 3CCSW 4WF9W 1Q81X 1K8AX 2ZJRW 1S72W 1NJIX 3CCUW 3CC4W 2ZJPW 1YJWW 3CCJW 2OTJW 1QVGV 4IOCW 1YHQW 3CCEW 1VQKW 1VQNW 2QEXW 1QVFV 1K9MX 3I56W 2OTLW 1M90X 4U67W 3J7ZZ 3CCMW 1KC8X 5JVHW 3CCLW 3CCRW 5GADa 1M1KX 3DLLW 1YJNW 4UY8Z 4WFBW 1YJ9W 4IO9W 5GAHa 1VQMW 1VQOW 3CCVW 1YITW 3CC7W 1Q7YX 1KD1X 3CCQW 3OW2V 1N8RX 5DM6W 4WFNW 5JVGW 3G6EW 2ZJQW 1KQSV 1VQ6W 4WCEW 1VQ9W 3I55W 5DM7W 1Q82X
chains in the Genus database with same CATH superfamily
3GQ1A 5HL7W 5GAGa 1VQ5W 5CA3A 4CPKA 4YJMA 1YI2W 1VQPW 4BL3A 3ZG0A 1VQ8W 3ZG5A 3CD6W 4WFAW 3G71W 1RQSA 4IOAW 3CMEW 3CF5W 1BXYA 1MBUC 2WA9A 3O2BA 3CXCV 1VQ4W 1R6OC 3CMAW 3CPWV 5GAEa 3PIPW 3W7TA 1YIJW 1VQLW 1CTFA 3PIOW 1W2BV 4DKIA 1JJ2V 1DD3A 1K73X 3GW1A 5GW7A 4BL2A 1Q86X 3G19A 1VQ7W 2W9RA 3W7WA 4YJXA 1R6QC 3G4SW 2QA4W 3CC2W 1RQUA 4YKAA 3CCSW 3ZFZA 4WF9W 1MBVB 3G1BA 1Q81X 1K8AX 1LZWA 2ZJRW 5M19A 1VQQA 1S72W 1NJIX 3CCUW 1RQVA 3GQ0A 3CC4W 3O2HA 2ZJPW 1YJWW 3O1FB 3CCJW 2OTJW 1QVGV 4IOCW 1YHQW 3CCEW 3G3PA 1VQKW 1MWRA 3W7UA 1VQNW 2QEXW 1QVFV 1K9MX 3I56W 2OTLW 1M90X 4U67W 4C1NA 3J7ZZ 3CCMW 1KC8X 5JVHW 1MG9A 3CCLW 3CCRW 5GADa 1M1KX 3DLLW 3DNJA 1YJNW 4UY8Z 3D3IA 3W7SA 5M18A 4WFBW 1YJ9W 4IO9W 5GAHa 2WA8A 1VQMW 1VQOW 3CCVW 1YITW 3CC7W 1Q7YX 1KD1X 1MWUA 1MWSA 3CCQW 1MBXC 3OW2V 3O2OA 1N8RX 4CJNA 5DM6W 3O1FA 4WFNW 5JVGW 3W7XA 1DD4A 3G6EW 2ZJQW 1KQSV 1VQ6W 5M1AA 4WCEW 1VQ9W 1MWTA 3I55W 5DM7W 1Q82X
chains in the Genus database with same CATH topology
5HL7W 5GAGa 1VQ5W 1YI2W 1VQPW 1VQ8W 3CD6W 4WFAW 3G71W 4IOAW 3CMEW 3CF5W 1BXYA 3CXCV 1VQ4W 3CMAW 3CPWV 5GAEa 3PIPW 1YIJW 1VQLW 3PIOW 1W2BV 1JJ2V 1K73X 1Q86X 1VQ7W 3G4SW 2QA4W 3CC2W 3CCSW 4WF9W 1Q81X 1K8AX 2ZJRW 1S72W 1NJIX 3CCUW 3CC4W 2ZJPW 1YJWW 3CCJW 2OTJW 1QVGV 4IOCW 1YHQW 3CCEW 1VQKW 1VQNW 2QEXW 1QVFV 1K9MX 3I56W 2OTLW 1M90X 4U67W 4C1NA 3J7ZZ 3CCMW 1KC8X 5JVHW 3CCLW 3CCRW 5GADa 1M1KX 3DLLW 1YJNW 4UY8Z 4WFBW 1YJ9W 4IO9W 5GAHa 1VQMW 1VQOW 3CCVW 1YITW 3CC7W 1Q7YX 1KD1X 3CCQW 3OW2V 1N8RX 5DM6W 4WFNW 5JVGW 3G6EW 2ZJQW 1KQSV 1VQ6W 4WCEW 1VQ9W 3I55W 5DM7W 1Q82X
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HL7 W;  5GAG a;  1VQ5 W;  1YI2 W;  1VQP W;  1VQ8 W;  3CD6 W;  4WFA W;  3G71 W;  4IOA W;  3CME W;  3CF5 W;  1BXY A;  3CXC V;  1VQ4 W;  3CMA W;  3CPW V;  5GAE a;  3PIP W;  1YIJ W;  1VQL W;  3PIO W;  1W2B V;  1JJ2 V;  1K73 X;  1Q86 X;  1VQ7 W;  3G4S W;  2QA4 W;  3CC2 W;  3CCS W;  4WF9 W;  1Q81 X;  1K8A X;  2ZJR W;  1S72 W;  1NJI X;  3CCU W;  3CC4 W;  2ZJP W;  1YJW W;  3CCJ W;  2OTJ W;  1QVG V;  4IOC W;  1YHQ W;  3CCE W;  1VQK W;  1VQN W;  2QEX W;  1QVF V;  1K9M X;  3I56 W;  2OTL W;  1M90 X;  4U67 W;  3J7Z Z;  3CCM W;  1KC8 X;  5JVH W;  3CCL W;  3CCR W;  5GAD a;  1M1K X;  3DLL W;  1YJN W;  4UY8 Z;  4WFB W;  1YJ9 W;  4IO9 W;  5GAH a;  1VQM W;  1VQO W;  3CCV W;  1YIT W;  3CC7 W;  1Q7Y X;  1KD1 X;  3CCQ W;  3OW2 V;  1N8R X;  5DM6 W;  4WFN W;  5JVG W;  3G6E W;  2ZJQ W;  1KQS V;  1VQ6 W;  4WCE W;  1VQ9 W;  3I55 W;  5DM7 W;  1Q82 X; 
#chains in the Genus database with same CATH topology
 3GQ1 A;  5HL7 W;  5GAG a;  1VQ5 W;  5CA3 A;  4CPK A;  4YJM A;  1YI2 W;  1VQP W;  4BL3 A;  3ZG0 A;  1VQ8 W;  3ZG5 A;  3CD6 W;  4WFA W;  3G71 W;  1RQS A;  4IOA W;  3CME W;  3CF5 W;  1BXY A;  1MBU C;  2WA9 A;  3O2B A;  3CXC V;  1VQ4 W;  1R6O C;  3CMA W;  3CPW V;  5GAE a;  3PIP W;  3W7T A;  1YIJ W;  1VQL W;  1CTF A;  3PIO W;  1W2B V;  4DKI A;  1JJ2 V;  1DD3 A;  1K73 X;  3GW1 A;  5GW7 A;  4BL2 A;  1Q86 X;  3G19 A;  1VQ7 W;  2W9R A;  3W7W A;  4YJX A;  1R6Q C;  3G4S W;  2QA4 W;  3CC2 W;  1RQU A;  4YKA A;  3CCS W;  3ZFZ A;  4WF9 W;  1MBV B;  3G1B A;  1Q81 X;  1K8A X;  1LZW A;  2ZJR W;  5M19 A;  1VQQ A;  1S72 W;  1NJI X;  3CCU W;  1RQV A;  3GQ0 A;  3CC4 W;  3O2H A;  2ZJP W;  1YJW W;  3O1F B;  3CCJ W;  2OTJ W;  1QVG V;  4IOC W;  1YHQ W;  3CCE W;  3G3P A;  1VQK W;  1MWR A;  3W7U A;  1VQN W;  2QEX W;  1QVF V;  1K9M X;  3I56 W;  2OTL W;  1M90 X;  4U67 W;  4C1N A;  3J7Z Z;  3CCM W;  1KC8 X;  5JVH W;  1MG9 A;  3CCL W;  3CCR W;  5GAD a;  1M1K X;  3DLL W;  3DNJ A;  1YJN W;  4UY8 Z;  3D3I A;  3W7S A;  5M18 A;  4WFB W;  1YJ9 W;  4IO9 W;  5GAH a;  2WA8 A;  1VQM W;  1VQO W;  3CCV W;  1YIT W;  3CC7 W;  1Q7Y X;  1KD1 X;  1MWU A;  1MWS A;  3CCQ W;  1MBX C;  3OW2 V;  3O2O A;  1N8R X;  4CJN A;  5DM6 W;  3O1F A;  4WFN W;  5JVG W;  3W7X A;  1DD4 A;  3G6E W;  2ZJQ W;  1KQS V;  1VQ6 W;  5M1A A;  4WCE W;  1VQ9 W;  1MWT A;  3I55 W;  5DM7 W;  1Q82 X; 
#chains in the Genus database with same CATH homology
 5HL7 W;  5GAG a;  1VQ5 W;  1YI2 W;  1VQP W;  1VQ8 W;  3CD6 W;  4WFA W;  3G71 W;  4IOA W;  3CME W;  3CF5 W;  1BXY A;  3CXC V;  1VQ4 W;  3CMA W;  3CPW V;  5GAE a;  3PIP W;  1YIJ W;  1VQL W;  3PIO W;  1W2B V;  1JJ2 V;  1K73 X;  1Q86 X;  1VQ7 W;  3G4S W;  2QA4 W;  3CC2 W;  3CCS W;  4WF9 W;  1Q81 X;  1K8A X;  2ZJR W;  1S72 W;  1NJI X;  3CCU W;  3CC4 W;  2ZJP W;  1YJW W;  3CCJ W;  2OTJ W;  1QVG V;  4IOC W;  1YHQ W;  3CCE W;  1VQK W;  1VQN W;  2QEX W;  1QVF V;  1K9M X;  3I56 W;  2OTL W;  1M90 X;  4U67 W;  4C1N A;  3J7Z Z;  3CCM W;  1KC8 X;  5JVH W;  3CCL W;  3CCR W;  5GAD a;  1M1K X;  3DLL W;  1YJN W;  4UY8 Z;  4WFB W;  1YJ9 W;  4IO9 W;  5GAH a;  1VQM W;  1VQO W;  3CCV W;  1YIT W;  3CC7 W;  1Q7Y X;  1KD1 X;  3CCQ W;  3OW2 V;  1N8R X;  5DM6 W;  4WFN W;  5JVG W;  3G6E W;  2ZJQ W;  1KQS V;  1VQ6 W;  4WCE W;  1VQ9 W;  3I55 W;  5DM7 W;  1Q82 X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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