3CCSD

Structure of anisomycin resistant 50s ribosomal subunit: 23s rrna mutation g2482a
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
165
structure length
140
Chain Sequence
FHEMREPRIEKVVVHMGIGHANAEDILGEITGQMPVRTKAKRTVGEFDIREGDPIGAKVTLRDEMAEEFLQTALPLAELATSQFDDTGNFSFGLDVTVNLVRPGYRVAKRDKASRSIPTKHRLNPADAVAFIESTYDVEV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 50S ribosomal protein L2P
publication title Mutations outside the anisomycin-binding site can make ribosomes drug-resistant.
pubmed doi rcsb
total genus 17
structure length 140
sequence length 165
ec nomenclature
pdb deposition date 2008-02-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00281 Ribosomal_L5 Ribosomal protein L5
D PF00673 Ribosomal_L5_C ribosomal L5P family C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1440.10 Alpha Beta 2-Layer Sandwich 50s Ribosomal Protein L5; Chain: A, 50s Ribosomal Protein L5; Chain: A, 3ccsD00
1Q86F 1KD1F 5GADF 5HL7D 3I56D 3PIPD 1KC8F 5DM6D 1VQ7D 2OTLD 3D7AA 3CC7D 3CMAD 3DLLD 1VQND 1YHQD 1VQ8D 3G6ED 2PZZA 1VQMD 3CD6D 4WFBD 1Q81F 1N8RF 2ZJPD 3CCMD 1VQ9D 2NRQA 5H1SH 4WFAD 1YITD 1MJIA 3CCRD 4U67D 3CCUD 2OGKA 1QVGD 5GAEF 4UY8F 4IOAD 3CCSD 3CXCD 1IQ4A 2NWUA 3I55D 4IOCD 5MLCG 3CC2D 1YJWD 4WFND 3CCQD 3CPWD 3PIOD 3J7ZF 1NJIF 1KQSD 3G71D 3CCLD 4WF9D 1W2BD 1YI2D 1VQ4D 2WNYA 1JJ2D 3CCJD 1QVFD 1YIJD 1VQ6D 5GAGF 4WCED 1YJ9D 1YJND 3CC4D 3C9GA 1VQPD 3CMED 1K8AF 4IO9D 5GAHF 2OTJD 2QA4D 1M1KF 5JVGD 1Q82F 1VQOD 1VQLD 5JVHD 3CF5D 2ZJRD 2ZJQD 3OW2D 1S72D 1K73F 3G4SD 1M90F 2QEXD 1K9MF 1VQ5D 3CCVD 1Q7YF 1VQKD 5DM7D 3CCED
chains in the Genus database with same CATH superfamily
1Q86F 1KD1F 5GADF 5HL7D 3I56D 3PIPD 1KC8F 5DM6D 1VQ7D 2OTLD 3D7AA 3CC7D 3CMAD 3DLLD 1VQND 1YHQD 1VQ8D 3G6ED 2PZZA 1VQMD 3CD6D 4WFBD 1Q81F 1N8RF 2ZJPD 3CCMD 1VQ9D 2NRQA 5H1SH 4WFAD 1YITD 1MJIA 3CCRD 4U67D 3CCUD 2OGKA 1QVGD 5GAEF 4UY8F 4IOAD 3CCSD 3CXCD 1IQ4A 2NWUA 3I55D 4IOCD 5MLCG 3CC2D 1YJWD 4WFND 3CCQD 3CPWD 3PIOD 3J7ZF 1NJIF 1KQSD 3G71D 3CCLD 4WF9D 1W2BD 1YI2D 1VQ4D 2WNYA 1JJ2D 3CCJD 1QVFD 1YIJD 1VQ6D 5GAGF 4WCED 1YJ9D 1YJND 3CC4D 3C9GA 1VQPD 3CMED 1K8AF 4IO9D 5GAHF 2OTJD 2QA4D 1M1KF 5JVGD 1Q82F 1VQOD 1VQLD 5JVHD 3CF5D 2ZJRD 2ZJQD 3OW2D 1S72D 1K73F 3G4SD 1M90F 2QEXD 1K9MF 1VQ5D 3CCVD 1Q7YF 1VQKD 5DM7D 3CCED
chains in the Genus database with same CATH topology
1Q86F 1KD1F 5GADF 5HL7D 3I56D 3PIPD 1KC8F 5DM6D 1VQ7D 2OTLD 3D7AA 3CC7D 3CMAD 3DLLD 1VQND 1YHQD 1VQ8D 3G6ED 2PZZA 1VQMD 3CD6D 4WFBD 1Q81F 1N8RF 2ZJPD 3CCMD 1VQ9D 2NRQA 5H1SH 4WFAD 1YITD 1MJIA 3CCRD 4U67D 3CCUD 2OGKA 1QVGD 5GAEF 4UY8F 4IOAD 3CCSD 3CXCD 1IQ4A 2NWUA 3I55D 4IOCD 5MLCG 3CC2D 1YJWD 4WFND 3CCQD 3CPWD 3PIOD 3J7ZF 1NJIF 1KQSD 3G71D 3CCLD 4WF9D 1W2BD 1YI2D 1VQ4D 2WNYA 1JJ2D 3CCJD 1QVFD 1YIJD 1VQ6D 5GAGF 4WCED 1YJ9D 1YJND 3CC4D 3C9GA 1VQPD 3CMED 1K8AF 4IO9D 5GAHF 2OTJD 2QA4D 1M1KF 5JVGD 1Q82F 1VQOD 1VQLD 5JVHD 3CF5D 2ZJRD 2ZJQD 3OW2D 1S72D 1K73F 3G4SD 1M90F 2QEXD 1K9MF 1VQ5D 3CCVD 1Q7YF 1VQKD 5DM7D 3CCED
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Q86 F;  1KD1 F;  5GAD F;  5HL7 D;  3I56 D;  3PIP D;  1KC8 F;  5DM6 D;  1VQ7 D;  2OTL D;  3D7A A;  3CC7 D;  3CMA D;  3DLL D;  1VQN D;  1YHQ D;  1VQ8 D;  3G6E D;  2PZZ A;  1VQM D;  3CD6 D;  4WFB D;  1Q81 F;  1N8R F;  2ZJP D;  3CCM D;  1VQ9 D;  2NRQ A;  5H1S H;  4WFA D;  1YIT D;  1MJI A;  3CCR D;  4U67 D;  3CCU D;  2OGK A;  1QVG D;  5GAE F;  4UY8 F;  4IOA D;  3CCS D;  3CXC D;  1IQ4 A;  2NWU A;  3I55 D;  4IOC D;  5MLC G;  3CC2 D;  1YJW D;  4WFN D;  3CCQ D;  3CPW D;  3PIO D;  3J7Z F;  1NJI F;  1KQS D;  3G71 D;  3CCL D;  4WF9 D;  1W2B D;  1YI2 D;  1VQ4 D;  2WNY A;  1JJ2 D;  3CCJ D;  1QVF D;  1YIJ D;  1VQ6 D;  5GAG F;  4WCE D;  1YJ9 D;  1YJN D;  3CC4 D;  3C9G A;  1VQP D;  3CME D;  1K8A F;  4IO9 D;  5GAH F;  2OTJ D;  2QA4 D;  1M1K F;  5JVG D;  1Q82 F;  1VQO D;  1VQL D;  5JVH D;  3CF5 D;  2ZJR D;  2ZJQ D;  3OW2 D;  1S72 D;  1K73 F;  3G4S D;  1M90 F;  2QEX D;  1K9M F;  1VQ5 D;  3CCV D;  1Q7Y F;  1VQK D;  5DM7 D;  3CCE D; 
#chains in the Genus database with same CATH topology
 1Q86 F;  1KD1 F;  5GAD F;  5HL7 D;  3I56 D;  3PIP D;  1KC8 F;  5DM6 D;  1VQ7 D;  2OTL D;  3D7A A;  3CC7 D;  3CMA D;  3DLL D;  1VQN D;  1YHQ D;  1VQ8 D;  3G6E D;  2PZZ A;  1VQM D;  3CD6 D;  4WFB D;  1Q81 F;  1N8R F;  2ZJP D;  3CCM D;  1VQ9 D;  2NRQ A;  5H1S H;  4WFA D;  1YIT D;  1MJI A;  3CCR D;  4U67 D;  3CCU D;  2OGK A;  1QVG D;  5GAE F;  4UY8 F;  4IOA D;  3CCS D;  3CXC D;  1IQ4 A;  2NWU A;  3I55 D;  4IOC D;  5MLC G;  3CC2 D;  1YJW D;  4WFN D;  3CCQ D;  3CPW D;  3PIO D;  3J7Z F;  1NJI F;  1KQS D;  3G71 D;  3CCL D;  4WF9 D;  1W2B D;  1YI2 D;  1VQ4 D;  2WNY A;  1JJ2 D;  3CCJ D;  1QVF D;  1YIJ D;  1VQ6 D;  5GAG F;  4WCE D;  1YJ9 D;  1YJN D;  3CC4 D;  3C9G A;  1VQP D;  3CME D;  1K8A F;  4IO9 D;  5GAH F;  2OTJ D;  2QA4 D;  1M1K F;  5JVG D;  1Q82 F;  1VQO D;  1VQL D;  5JVH D;  3CF5 D;  2ZJR D;  2ZJQ D;  3OW2 D;  1S72 D;  1K73 F;  3G4S D;  1M90 F;  2QEX D;  1K9M F;  1VQ5 D;  3CCV D;  1Q7Y F;  1VQK D;  5DM7 D;  3CCE D; 
#chains in the Genus database with same CATH homology
 1Q86 F;  1KD1 F;  5GAD F;  5HL7 D;  3I56 D;  3PIP D;  1KC8 F;  5DM6 D;  1VQ7 D;  2OTL D;  3D7A A;  3CC7 D;  3CMA D;  3DLL D;  1VQN D;  1YHQ D;  1VQ8 D;  3G6E D;  2PZZ A;  1VQM D;  3CD6 D;  4WFB D;  1Q81 F;  1N8R F;  2ZJP D;  3CCM D;  1VQ9 D;  2NRQ A;  5H1S H;  4WFA D;  1YIT D;  1MJI A;  3CCR D;  4U67 D;  3CCU D;  2OGK A;  1QVG D;  5GAE F;  4UY8 F;  4IOA D;  3CCS D;  3CXC D;  1IQ4 A;  2NWU A;  3I55 D;  4IOC D;  5MLC G;  3CC2 D;  1YJW D;  4WFN D;  3CCQ D;  3CPW D;  3PIO D;  3J7Z F;  1NJI F;  1KQS D;  3G71 D;  3CCL D;  4WF9 D;  1W2B D;  1YI2 D;  1VQ4 D;  2WNY A;  1JJ2 D;  3CCJ D;  1QVF D;  1YIJ D;  1VQ6 D;  5GAG F;  4WCE D;  1YJ9 D;  1YJN D;  3CC4 D;  3C9G A;  1VQP D;  3CME D;  1K8A F;  4IO9 D;  5GAH F;  2OTJ D;  2QA4 D;  1M1K F;  5JVG D;  1Q82 F;  1VQO D;  1VQL D;  5JVH D;  3CF5 D;  2ZJR D;  2ZJQ D;  3OW2 D;  1S72 D;  1K73 F;  3G4S D;  1M90 F;  2QEX D;  1K9M F;  1VQ5 D;  3CCV D;  1Q7Y F;  1VQK D;  5DM7 D;  3CCE D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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